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Bioinformatics Presentation

 
 
 
 
 
cwire4

by cwire4

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I was involved in a research project with several other people at Augusta State University where we were looking at using the process of Genetic Programming to predict cellular growth based on limited data. The idea was to gather data for the full duration on some culture growths (I think they used Serratia for the cultures) and we ran analysis on it to generate 20 "idealized" models of the environment. Then, we input data from new culture samples (from a different set than the last) and see how close we can model the results. As you can see from the attached graph, pretty well. We were supposed to have samples taken at even intervals but as you can see from the data we had to pad some of the input data as the lab assistant did not take samples at even intervals, this could only have helped the prediction. We were very surprised to see the results, especially how well it smoothed out the curve, and a formal paper is forthcoming following more testing.

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02/19/2009

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