• Embed Doc
  • Copy Link
  • Readcast
  • Collections
  • CommentGo Back
 
Wed Feb 4 09:11:31 2009
Solution parameters:
Sequence file:
seq.seq
Family matches:
yes
MatInspector library:
Matrix Family Library Version 8.0 (November 2008)
Selected groups
(core/matrix sim)
•
Vertebrates (0.75/Optimized)
Inspecting sequence GXP_1686362 [GXP_1686362] (1 -765):
[
GXL_568596
]
 Check transcription factor <->matrix family assignmentFamilyMatrixOpt.Positionfrom - toStr.Coresim.Matrixsim.Sequence
(red: ci-value > 60capitals: core sequence) V$PARFV$TEF.010.851 - 17(+)0.818
 
0.884tactgtgatATAAttgc V$DLXFV$DLX3.010.912 - 20(+)1.0001.000actgtgataTAATtgcaaa  V$PARFV$TEF_HLF.010.782 - 18(-)0.8600.801tgcaaTTATatcacagt  V$HOXFV$HOXD3.010.853 - 21(-)1.0000.867ctttgcAATTatatcacag  V$HOMFV$MSX.010.974 - 22(+)1.0000.973tgtgataTAATtgcaaagt  V$HBOXV$MEOX1.010.845 - 23(+)1.0000.856gtgatatAATTgcaaagta  V$CARTV$S8.010.976 - 26(+)1.0000.994tgataTAATtgcaaagtaaac  V$NKXHV$NKX25.020.886 - 24(+)1.0000.882tgataTAATtgcaaagtaa  V$DLXFV$DLX2.010.927 - 25(-)1.0000.945tttactttgcAATTatatc  V$ATBFV$ATBF1.010.799 - 25(-)1.0000.808tttactttgcAATTata  V$FKHDV$HNF3.010.9816 - 32(+)1.0000.987gcaaagtAAACaaatga  V$SORYV$SRY.010.9320 - 36(+)1.0000.939agtaaACAAatgaattt  V$BRNFV$BRN2.030.9221 - 39(-)1.0000.936tggaaattcATTTgtttac  V$NFATV$NFAT5.010.8323 - 41(-)1.0000.862tatGGAAattcatttgttt  V$BRNFV$BRN2.030.9224 - 42(+)1.0000.921aacaaatgaATTTccataa  V$NFKBV$NFKAPPAB65.010.8727 - 39(+)1.0000.875aaatgaatTTCCa  V$OCT1V$OCT1.060.8127 - 43(-)1.0000.952tttatggaAATTcattt  V$BRN5V$BRN5.020.7728 - 50(+)0.7500.773aatgaatttccATAAagctaatt  V$BCL6V$BCL6.020.7730 - 46(-)0.8000.778agctttaTGGAaattca  V$LHXFV$LHX3.020.8233 - 55(+)1.0000.849atttccataaagcTAATttatct  V$SNAPV$PSE.020.7333 - 51(+)0.8920.794atttcCATAaagctaattt  V$BRNFV$BRN4.010.8935 - 53(+)1.0000.899ttccataaagcTAATttat  V$CARTV$ALX3.010.8536 - 56(-)1.0000.869aagataAATTagctttatgga  V$DLXFV$DLX3.020.9337 - 55(+)1.0000.937ccataaagcTAATttatct
 
 V$LHXFV$LHX2.010.8537 - 59(+)1.0000.855ccataaagctAATTtatctttat  V$HOXFV$HOXD1.010.8738 - 56(-)1.0000.876aagataAATTagctttatg  V$LHXFV$LHX4.010.8338 - 60(-)1.0000.845tataaagataAATTagctttatg  V$HBOXV$EN2.010.8639 - 57(-)1.0000.860aaagataAATTagctttat  V$HOMFV$MSX2.010.9539 - 57(+)1.0000.956ataaagCTAAtttatcttt  V$MYT1V$MYT1.010.7539 - 51(+)0.7500.775ataAAGCtaattt  V$OCT1V$OCT1.060.8139 - 55(+)1.0000.811ataaagctAATTtatct  V$BRNFV$BRN2.040.8240 - 58(-)0.7590.820taaagatAAATtagcttta  V$HBOXV$GSH2.010.9540 - 58(+)1.0000.965taaagcTAATttatcttta  V$HOMFV$NOBOX.020.8940 - 58(-)1.0000.894taaagataAATTagcttta  V$CARTV$PHOX2.010.8741 - 61(+)1.0000.873aaagcTAATttatctttatat  V$HOXFV$HOXB4.010.8441 - 59(+)1.0000.840aaagctAATTtatctttat  V$PAXHV$PAX4.020.8441 - 55(-)1.0000.848agataAATTagcttt  V$PAXHV$PAX4.020.8442 - 56(+)1.0000.840aagctAATTtatctt  V$GATAV$GATA1.030.9546 - 58(-)1.0000.958taaaGATAaatta  V$MYT1V$MYT1.010.7547 - 59(-)0.7500.775ataAAGAtaaatt  V$FKHDV$XFD2.010.8948 - 64(-)1.0000.912aaaataTAAAgataaat  V$NFATV$NFAT5.010.8351 - 69(-)1.0000.847tatGGAAaatataaagata  V$IRFFV$IRF4.010.9455 - 75(-)1.0000.948aataaatatgGAAAatataaa  V$OCT1V$OCT1.040.8055 - 71(-)1.0000.882aaTATGgaaaatataaa  V$PDX1V$PDX1.010.7462 - 80(+)0.8260.754tttccatatTTATtacttc  V$CDXFV$CDX2.020.8563 - 81(+)1.0000.939ttccatatTTATtacttca  V$HOXFV$HOXB8.010.8363 - 81(-)0.8350.870tgaagtaATAAatatggaa  V$SATBV$SATB1.010.9464 - 78(-)1.0000.957agtAATAaatatgga  V$ABDBV$HOXA10.010.8765 - 81(-)1.0000.915tgaagtaaTAAAtatgg  V$CARTV$RHOX6.010.8466 - 86(+)0.7830.842catatTTATtacttcaaattc  V$HOXFV$HOXD3.010.8566 - 84(+)0.7660.860catattTATTacttcaaat  V$CREBV$ATF2.010.8767 - 87(-)0.7770.873agaattTGAAgtaataaatat  V$PARFV$TEF.010.8570 - 86(-)1.0000.897gaatttgaaGTAAtaaa  V$CHRFV$CHR.010.9274 - 86(-)1.0000.951gaatTTGAagtaa  V$FKHDV$FHXB.010.8380 - 96(-)0.9090.837aatgtaACAAgaatttg  V$HNF1V$HMBOX.010.8381 - 97(+)1.0000.859aaattcttGTTAcattt  V$DMRTV$DMRT5.010.8082 - 102(+)1.0000.965aattcttGTTAcattttcaat  V$PARFV$VBP.010.8686 - 102(-)1.0000.901attgaaaatGTAAcaag  V$BRNFV$BRN2.010.8687 - 105(-)0.9330.895acAATTgaaaatgtaacaa  V$PRDFV$BLIMP1.010.8187 - 105(-)1.0000.841acaattGAAAatgtaacaa  V$SORYV$SOX9.010.9094 - 110(-)1.0000.900caaacaCAATtgaaaat  V$CHRFV$CHR.010.92104 - 116(+)1.0000.965gtgtTTGAaatat V$OCT1V$OCT1.060.81106 - 122(-)0.7500.841catatgatATTTcaaac  V$EVI1V$EVI1.040.73113 - 12(-)1.0000.754aaaataccatatGATAt
 
9 V$RUSHV$SMARCA3.010.96115 - 125(-)1.0000.997taCCATatgat  V$LHXFV$LHX3.020.82117 - 139(+)1.0000.858catatggtattttTAATttaaat  V$MEF2V$MEF2.060.87117 - 139(-)1.0000.901atttaaattaaAAATaccatatg  V$OCT1V$OCT1.060.81117 - 133(+)0.7500.855catatggtATTTttaat  V$HOMFV$HHEX.010.95119 - 137(+)1.0000.966tatggtattttTAATttaa V$CARTV$PROP1.010.84120 - 140(-)1.0000.856catttaAATTaaaaataccat V$HMTBV$MTBF.010.90121 - 129(+)1.0000.969tggtATTTt V$LHXFV$LMX1B.020.83121 - 143(+)1.0000.864tggtatttttAATTtaaatgtac V$HOXFV$HOXC4.010.84122 - 140(-)1.0000.856catttaAATTaaaaatacc V$LHXFV$LMX1A.010.83122 - 144(-)1.0000.868agtacatttaAATTaaaaatacc V$BRNFV$BRN2.030.92123 - 141(+)1.0000.944gtatttttaATTTaaatgt  V$HOMFV$MSX.010.97123 - 141(+)1.0000.989gtattttTAATttaaatgt V$CARTV$PROP1.010.84125 - 145(+)1.0000.856atttttAATTtaaatgtacta V$HBOXV$EN1.010.77125 - 143(+)1.0000.918atttttaaTTTAaatgtac  V$HOXFV$HOXC4.010.84125 - 143(+)1.0000.856atttttAATTtaaatgtac V$NKX6V$NKX61.010.91125 - 139(+)1.0000.920atttTTAAtttaaat V$OCT1V$OCT1.050.89126 - 142(-)0.9000.931taCATTtaaattaaaaa  V$RBITV$BRIGHT.010.92126 - 138(-)1.0000.950tttaaATTAaaaa V$HBOXV$EN1.010.77128 - 146(-)1.0000.787ttagtacaTTTAaattaaa  V$DMRTV$DMRT4.010.79131 - 151(-)1.0000.818aataattagTACAtttaaatt  V$IRXFV$IRX6.010.85132 - 144(-)0.7500.861agtaCATTtaaat V$IRXFV$IRX6.010.85133 - 14(+)0.7500.851tttaAATGtacta
of 00

Leave a Comment

You must be to leave a comment.
Submit
Characters: ...
You must be to leave a comment.
Submit
Characters: ...