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IRRI AR 2012 - Publications 2012

IRRI AR 2012 - Publications 2012

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IRRI Annual Report 2012
IRRI Annual Report 2012

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Published by: International Rice Research Institute on May 08, 2013
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IRRIA
 nnuAl
epoRt
2012
1 of 10
Agrawal GK, Sarkar A, Righetti PG, Pedreschi R,Carpentier S, Wang T, et al. 2012. A decadeo plant proteomics and mass spectrometry:translation o technical advancements to oodsecurity and saety issues. Mass Spectrom. Rev.9999: 1-32.Akkinepalli H, Ereul N, Liu Y, Malabanan K,Howells R, Stamati K, et al. 2012. Snapshotso gene expression in rice: limitations or allelicexpression imbalance determination. Genome55(5): 400-406.Alberto MCR, Hirano T, Miyata A, Wassmann R,Kumar A, Padre A, et al. 2012. Inuence oclimate variability on seasonal and interannualvariations o ecosystem CO
2
exchange in oodedand non-ooded rice felds in the Philippines.Field Crops Res. 134: 80-94.Azam S, Thakur V, Ruperao P, Shah T, Balaji J,Amindala BP, et al. 2012. Coverage-basedconsensus calling (CBCC) o short sequencereads and comparison o CBCC results to identiySNPs in chickpea (
Cicer arietinm
; Fabaceae), acrop species without a reerence genome. Am. J.Bot. 99(2): 186-192.Banayo NPM, Sta. Cruz PC, Aguilar EA, Badayos RB,Haeele SM. 2012. Evaluation o bioertilizers inirrigated rice: eects on grain yield at dierentertilizer rates. Agriculture 2: 73-86.Barboza GA, Pede VO. 2012. A spatial econometricanalysis o cultural dimensions, technologyknowledge and economic growth. Rev. Dev.Econ. 16(2): 262-275.Barrion AT, Villareal SS, Catindig JLA, Cai D, YuanQH, Heong KL. 2012. The spider auna in therice agricultural landscape o Hainan Island,China: composition, abundance and eedingstructure. Asia Lie Sci. 21(2): 625-651.Boopathi NM, Swapanshri G, Kavitha P, Sathish S,Nithya R, Ratnam W, et al. 2012. Introgression,evaluation and bulked segregant analysiso major yield QTL under water stress intoindigenous elite line or low water availability.Rice Sci. 19(4): 6.Butardo VMJr, Daygon VD, Colgrave ML, CampbellPM, Resurreccion A, Cuevas RP, et al. 2012.Biomolecular analyses o starch and starchgranule proteins in the high-amylose rice mutantGoami 2. J. Agric. Food Chem. 60(46): 11576-11585.Caemmerer SV, Quick WP, Furbank RT. 2012. Thedevelopment o C4 rice: current progress anduture challenges. Science 336 (6089): 1671-1672.Calingacion MN, Boualaphanh C, Daygon VD. 2012.A genomics and multi-platorm metabolomicsapproach to identiy new traits o rice quality intraditional and improved varieties. Metabolomics8(5): 771-783.Carasso C, Fusconi A, Hay FR, Dho S, Gallino B,Mucciarelli M. 2012. A threatened alpinespecies,
Fritillaria tbiormis
subsp.
: seedmorphology and temperature regulation oembryo growth. Plant Biosyst. 146: 74-83.Chandna P, Ladha JK, Singh UP, Punia M, GuptaR, Sidhu BS. 2012. Using remote sensingtechnologies to enhance resource conservationand agricultural productivity in underutilizedlands o South Asia. Appl. Geogr. 32: 757-765.Chauhan BS. 2012. Can knowledge in seed ecologycontribute to improved weed management indirect-seeded rice? Curr. Sci. 103(5): 486-489.Chauhan BS. 2012. Weed ecology and weedmanagement strategies or dry-seeded rice inAsia. Weed Technol. 26(1): 1-13.Chauhan BS. 2012. Weedy rice (
Oryza satia
). II.Response o weedy rice to seed burial andooding depth. Weed Sci. 60(3): 385-388.Chauhan BS, Abugho SB. 2012. Interaction o riceresidue and PRE herbicides on emergence andbiomass o our weed species. Weed Technol.26(4): 627-632.Chauhan BS, Abugho SB. 2012. Phenotypic plasticityo spiny amaranth (
 Amaranths spinoss
) andlongruited primrose-willow (
Ldwigia octoalis
)in response to rice intererence. Weed Sci. 60(3):411-415.Chauhan BS, Abugho SB. 2012. Threelobemorningglory (
Ipomoea triloba
) germination andresponse to herbicides. Weed Sci. 60: 199-204.Chauhan BS, Mahajan G. 2012. Role o integratedweed management strategies in sustainingconservation agriculture systems. Curr. Sci.103(2): 135-136.Chauhan BS, Mahajan G, Sardana V, Timsina J, JatML. 2012. Productivity and sustainability o the
Publications 2012
 
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 nnuAl
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2012
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ublications
 2 of 10
rice-wheat cropping system in the Indo-GangeticPlains o the Indian subcontinent: problems,opportunities, and strategies. Adv. Agron. 117:315-369.Chauhan BS, Opena J. 2012. Eect o tillagesystems and herbicides on weed emergence,weed growth, and grain yield in dry-seeded ricesystems. Field Crops Res. 137: 56-59.Chauhan BS, Opena J. 2012. Growth o purplenutsedge (
Cypers rotnds
) in response tointererence with direct-seeded rice. WeedTechnol. 26: 506-509.Chauhan BS, Singh RG, Mahajan G. 2012. Ecologyand management o weeds under conservationagriculture: a review. Crop Prot. 38: 57-65.Chemin Y, Phuphak S, Asilo S, Hijmans R. 2012.Determining spatial and temporal patterns osubmergence in rice with MODIS satellite data.Int. J. Geoinormatics 8(2): 1-12.Cheng LR, Wang Y, Meng LJ, Hu X, Cui YR, Sun Y, etal. 2012. Identifcation o salt-tolerant QTLs withstrong genetic background eect using two setso reciprocal introgression lines in rice. Genome55(1): 45-55.Cheng LR, Wang JM, Uzokwe V, Meng LJ, WangY, Sun Y, et al. 2012. Genetic analysis o coldtolerance at seedling stage and heat tolerance atanthesis in rice (
Oryza satia
L.). J. Integr. Agric.11(3): 359-367.Cheng LR, Wang JM, Ye GY, Luo CG, Xu JL, Li ZK.2012. Identifcation o stably expressed QTL orheading date using reciprocal introgression lineand recombinant inbred line populations in rice.Genet. Res. 94(5): 245-253.Chu SH, Jiang WZ, Lee JH, Chin JH, Koh HJ. 2012.QTL analyses o heterosis or grain yield andyield-related traits in indica-japonica crosses orice (
Oryza satia
L.). Genes Genomics 34: 367-377.Chu Thai Hoanh, Ngo Dang Phong, Nguyen HieuTrung, Le Canh Dung, Nguyen Xuan Hien,Nguyen Van Ngoc, et al. 2012. Modellingto support land and water management:experiences rom the Mekong River Delta,Vietnam. Water Int. 37(4): 408-426.Clerget B, Rattunde HFW, Weltzien E. 2012. Whytropical sorghum sown in winter months hasdelayed owering and modifed morphogenesisin spite o prevailing short days. Field Crops Res.125: 139-150.Cuc LM, Huyen LTN, Hien PTM, Hang VTT, Dam NQ,Mui PT, Quang VD, Ismail AM, Ham LH. 2012.Application o marker-assisted backcrossing tointrogress the submergence tolerance QTL SUB1into the Vietnam elite rice variety-AS996. Am. J.Plant Sci. 3: 528-536.Dar SR, Thomas T, Dagar JC, Lal K, Mehboob S,Bakshi MR, et al. 2012. Eect o ertilizernitrogen and varied C:N ratio o mushroomcompost on rice yield and nitrogen orms o soil.J. Food Agric. Environ. 10(3/4): 423-427.Dixit S, Swamy BPM, Vikram P, Ahmed HU, Sta. CruzMT, Amante M, et al. 2012. Fine mapping oQTLs or rice grain yield under drought revealssub-QTLs conerring a response to variabledrought severities. Theor. Appl. Genet. 125(1):155-169.Dixit S, Swamy BPM, Vikram P, Bernier J, Sta CruzMT, Amante M, et al. 2012. Increased droughttolerance and wider adaptability o qDTY (12.1)conerred by its interaction with qDTY (2.3) andqDTY (3.2). Mol. Breed. 30(4): 1767-1779.Dobermann A. 2012. Getting back to the feld.Nature 485: 176-177.Duan JZ, Zhang MH, Zhang HL, Xiong HY, Liu PL, AliJ, et al. 2012. OsMIOX, a myo-inositol oxygenasegene, improves drought tolerance throughscavenging o reactive oxygen species in rice(
Oryza satia
L.). Plant Sci. 196: 143-151.Feng BH, Yang Y, Shi YF, Lin L, Chen J, Huang QN, etal. 2012. Genetic analysis and gene mapping oa light brown spotted lea mutant in rice. Chin.J. Rice Sci. 26(3): 297-301.Fischer KS, Fukai S, Kumar A, Leung H, Jongdee B.2012. Field phenotyping strategies and breedingor adaptation o rice to drought. Front. Physiol.3(282): 1-21.Fujita D, Tagle AG, Ebron LA, Fukuta Y, KobayashiN. 2012. Characterization o near-isogenic linescarrying QTL or high spikelet number with thegenetic background o an indica rice variety IR64(
Oryza satia
L.). Breed. Sci. 62(1): 18-26.Gamuyao R, Chin JH, Pariasca-Tanaka J, Pesaresi P,Catausan S, Dalid C, et al. 2012. The proteinkinase Pstol1 rom traditional rice conerstolerance o phosphorus defciency. Nature488(7412): 535-541.Gaur VS, Singh US, Gupta AK, Kumar A. 2012.Inuence o dierent nitrogen inputs onthe members o ammonium transporterand glutamine synthetase genes in two ricegenotypes having dierential responsiveness tonitrogen. Mol. Biol. Rep. 39(8): 8035-8044.Gaydon DS, Probert ME, Buresh RJ, Meinke H,Suriadi A, Dobermann A, et al. 2012. Rice
 
IRRIA
 nnuAl
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2012
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ublications
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in cropping systems - modelling transitionsbetween ooded and non-ooded soilenvironments. Eur. J. Agron. 39: 9-24.Gaydon DS, Probert ME, Buresh RJ, Meinke H,Timsina J. 2012. Modelling the role o algaein rice crop nutrition and soil organic carbonmaintenance. Eur. J. Agron. 39: 35-43.Ghimire KH, Quiatchon LA, Vikram P, Swamy BPM,Dixit S, Ahmed H, et al. 2012. Identifcation andmapping o a QTL (qDTY1.1) with a consistenteect on grain yield under drought. Field CropsRes. 131: 88-96.Gowda VRP, Henry A, Vadez V, Shashidhar HE,Serraj R. 2012. Water uptake dynamics underprogressive drought stress in diverse accessionso the OryzaSNP panel o rice (
Oryza satia
).Funct. Plant Biol. 10 p.Gumma MK, Daniel VR, Nelson A, ThenkabailPS, Venkat AR, Priyanie A. 2012. Expansiono urban- and wastewater irrigated areas inHyderabad, India. Irrig. Drain. Syst. 25:135-149.Gurr GM, Read DMY, Catindig JLA, Cheng JA, LiuJ, La Phan Lan., et al. 2012. Parasitoids o therice leaolder
Cnaphalocrocis medinalis
andprospects or enhancing biological control withnectar plants. Agric. For. Meteorol. 14 (1): 1-12.Hansen TH, Lombi E, Fitzgerald M. 2012. Losses oessential mineral nutrients by polishing o ricedier among genotypes due to contrasting grainhardness and mineral distribution. J. Cereal Sci.56(2): 307-315.Hay FR, Thavong P, Taridno P, Timple S. 2012.Evaluation o zeolite seed ‘drying beads’ ordrying rice seeds to low moisture content priorto long-term storage. Seed Sci. Technol. 40(3):374-395.He H, Serraj R. 2012. Involvement o peduncleelongation, anther dehiscence and spikeletsterility in upland rice response to reproductive-stage drought stress. Environ. Exp. Bot. 75:120-127.He Z, Xie F, Chen L, Paz MAD. 2012. Geneticdiversity o tropical hybrid rice germplasmmeasured by molecular markers. Rice Sci. 19(3):193-201.Henry A, Cal AJ, Batoto TC, Torres RO, Serraj R.2012. Root attributes aecting water uptake orice (
Oryza satia
) under drought. J. Exp. Bot.63(13): 4751-4763.Horgan FG. 2012. Eects o lea damage onoviposition choice in an invasive paropsinebeetle. J. Appl. Entomol. 136: 271-281.Horgan FG, Quiring DT, Lagnaoui A, Pelletier Y.2012. Lie histories and ftness o two tubermoth species eeding on native Andeanpotatoes. Neotrop. Entomol. 41(4): 3330-3340.Huang B, Xu JY, Hou MS, Ali J, Mou TM. 2012.Introgression o bacterial blight resistancegenes
 Xa7, Xa21, Xa22
and
 Xa23
into hybridrice restorer lines by molecular marker-assistedselection. Euphytica 187: 449-459.Hussain AJ, Ali J, Siddiq EA, Gupta VS, Reddy UK,Ranjekar PK. 2012. Mapping o
tms8
gene ortemperature-sensitive genic male sterility (TGMS)in rice (
Oryza satia
L.). Plant Breed. 131(1): 42-47.Huyen LTN, Cuc LM, Ismail AM, Ham LH. 2012.Introgression o the salinity tolerance QTLs saltolinto AS996, the elite rice variety o Vietnam. Am.J. Plant Sci. 3: 981-987.Itekharuddaula KM, Salam MA, Newaz MA, AhmedHU, Collard BCY, Septiningsih EM, et al. 2012.Comparison o phenotypic versus marker-assisted background selection or the SUB1 QTLduring backcrossing in rice. Breed. Sci. 62(3):216-222.Impa S, Johnson-Beebout SR. 2012. Mitigating zincdefciency and achieving high grain Zn in ricethrough integration o soil chemistry and plantphysiology research. Plant Soil 361(1/2): 3-41.Islam MR, Gregorio GB, Salam MA, Collard BCY,Singh RK, Hassan L. 2012. Validation o SalTollinked markers and haplotype diversity onchromosome 1 o rice. Mol. Plant Breed. 3(10):103-114.Jagadish SVK, Septiningsih EM, Kohli A, ThomsonMJ, Ye G, Redona E, et al. 2012. Geneticadvances in adapting rice to a rapidly changingclimate. J. Agron. Crop Sci. 198: 360-373.Jena KK, Kim SM, Suh JP, Yang CI, Kim YG. 2012.Identifcation o cold-tolerant breeding linesby quantitative trait loci associated with coldtolerance in rice. Crop Sci. 52(2): 517-523.Johnson MTJ, Carpenter EJ, Tian ZJ, Bruskiewich R,Burris JN, Carrigan CT, et al. 2012. Evaluatingmethods or isolating total RNA and predictingthe success o sequencing phylogeneticallydiverse plant transcriptomes. PLoS One 7(11):e50226. 12 p.Kajisa K. 2012. The double tragedy o irrigationsystems in Tamil Nadu, India: assessment o thereplacement o traditional systems by privatewells. Water Policy 14(3): 371-390.Katayanagi N, Furukawa Y, Fumoto T, Hosen Y.2012. Validation o the DNDC-Rice model byusing CH
4
and N
2
O ux data rom rice cultivated

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