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  • Introduction of Aleaves by S. Kuraku (In Japanese)

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    Shigehiro Kuraku
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    The chief developer of aLeaves outlines its potential with some stories about its launch and possible future improvement.

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    Introduction of aLeaves by S. Kuraku (in Japanese)

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    The chief developer of aLeaves outlines its potential with some stories about its launch and possible future improvement.

    Copyright:

    Attribution Non-Commercial (BY-NC)
    Download as PDF, TXT or read online from Scribd
    Flag for inappropriate content
    389 views4 pages

    Introduction of Aleaves by S. Kuraku (In Japanese)

    Uploaded by

    Shigehiro Kuraku
    The chief developer of aLeaves outlines its potential with some stories about its launch and possible future improvement.

    Copyright:

    Attribution Non-Commercial (BY-NC)
    Download as PDF, TXT or read online from Scribd
    Flag for inappropriate content
    of 4

    vol.14 No.

    aLeaves

    CDBhttp://www.cdb.riken.jp/gra/skuraku.html

    GenBank

    GenBank National Center for Biotechnology InformationNCBI


    NCBI European Bioinformatics InstituteEBI
    Ensembl

    vol.14 No.3

    aLeaves1

    aLeaves (http://aleaves.cdb.riken.jp; )
    E
    NCBI BLAST

    NCBI GenBankGenPept
    multifasta
    BLAST

    vol.14 No.3

    aLeaves

    paralogousorthologoushidden paralogy

    aLeaves
    2
    MAFFT

    aLeaves

    GenBank
    aLeaves-MAFFT

    aLeaves
    MAFFT

    aLeaves

    vol.14 No.3

    1.4x
    Callorhinchus miliiLeucoraja erinacea
    3

    4
    aLeaves

    aLeaves

    aLeaves

    1. Kuraku, S., Zmasek, C.M., Nishimura, O., and Katoh, K. (2013) aLeaves facilitates
    on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server
    with enhanced interactivity. Nuc. Acids Res., 2013. 41 (W1): W22-W28.
    2. Katoh, K. & Standley, D.M. (2013) MAFFT multiple sequence alignment software version 7:
    improvements in performance and usability. Mol Biol Evol. 30: 772-80.
    3. Venkatesh, et al. (2007) Survey sequencing and comparative analysis of the elephant shark
    (Callorhinchus milii) genome. PLoS Biol. 5: e101.
    4. Dessimoz, C. et al. (2011) Comparative genomics approach to detecting split-coding regions
    in a low-coverage genome: lessons from the chimaera Callorhinchus milii (Chondrichthyes,
    Holocephali). Brief Bioinform. 12: 474-84.

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