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RasMol Reference Card

RasMol Reference Card

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Published by Sneetsher Crispy

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Published by: Sneetsher Crispy on Aug 22, 2009
Copyright:Attribution Non-commercial

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07/07/2013

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RasMol v2.5Quick Reference Card
Display CommandsColour Commands
wireframe [boolean]
Display wireframe
colour [object] <colour>
Colour representation
(c) Copyright 1994 Roger Sayle
wireframe <value>
Display stick bonds
Objects:
Mouse Buttons
spacefill [boolean]
Display spacefill spheres
atomsbondsbackbonespacefill <value>
Specify atom sphere radius
ribbonslabelshbonds
Clicking on an atom identifies that atom in the commandwindow. Moving the mouse whilst holding mouse buttonsand/or control keys manipulates the molecule. The defaultbindings are described below.
spacefill temperaturessbondsdotsaxesspacefill userribbons1ribbons2backbone [boolean]
Display alpha backbone
Predefined Colours:backbone <value>
Specify backbone radius
blueblackcyangreen
 RASWIN RASMAC ACTIO
ribbons [boolean]
Display solid ribbons
greenbluemagentaorangepurple
Left ButtonSINGLE BUTTONRotate X-Y
ribbons <value>
Specify ribbon width
redredorangevioletwhite
Right ButtonOPTIONTranslate X-Y
yellowstrands [boolean]
Draw ribbon as strandsShift Left ButtonSHIFTZoom
strands <value>
Specify ribbon widthShift Right ButtonSHIFT + OPTIONRotate Z
Atom Colour Schemes:set strands <value>
Number of ribbon strandsControl Left ButtonCTRLZ-Clipping (Slab)
cpkaminoshapelylabel [boolean]
Draw default atom labels
groupchainstructure
General Commands
label <string>
Label with arbitrary text
temperaturechargeuserset fontsize <value>
Set label font height
load [format] <filename>
Load a molecule
colour hbonds type
Colour hbonds by offset
ssbonds [boolean]
Display disulphide bonds
pdb
Brookhaven Protein Databank 
colour dots potential
Display potential surface
ssbonds <value>
Specify ssbond radius
mdl
Molecular Design Limited's Mol file
set ssbonds backbone
SSBonds between alphas
mol2
Tripos' Sybyl Mol2 file format
Manipulation Commands
set ssbonds sidechain
SSBonds between sulphurs
alchemy
Tripos' Alchemy file format
charmm
CHARMm format card file
rotate <axis> [-] <value>
Rotate molecule
hbonds [boolean]
Display hydrogen bonds
xyz
MSC's XMOL XYZ file format
hbonds <value>
Specify hbond radius
translate <axis> [-] <value>
Translate molecu
exit
Exit from RasMol
set hbonds backbone
HBonds between alphas
zoom [boolean]
Scale molecule
quitset hbonds sidechain
HBonds donor/acceptor
zoom <value>
Specify magnification
help [topic [subtopic]]
Display on-line help topic
dots [boolean]
Display dot surface
slab [boolean]
Enable/disable slabbing
dots <value>
Specify dot density
select <expression>
Update part of molecule
slab <value>
Move Z-clipping plane
restrict <expression>
Display only part of mol.
set solvent [boolean]
VDW or solvent surface
centre [expression]
Set centre of rotation
set radius <value>
Specify probe sphere rad.
set bondmode [mode]
Change bond selection
reset
Initial transformation
set axes [boolean]
Display co-ordinate axes
script <filename>
Execute file of commands
set boundbox [boolean]
Display bounding box
zap
Delete molecule
set unitcell [boolean]
Display crystal unit cell

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