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Cray Series Programming Environment Users Guide

Cray Series Programming Environment Users Guide

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Published by cscutt
Cray Programming Environment Users Guide
Cray Programming Environment Users Guide

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Published by: cscutt on Feb 24, 2008
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12/04/2012

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Cray XT™ Series ProgrammingEnvironment User's Guide
S–2396–20
 
© 2004–2007 Cray Inc. All Rights Reserved. This manual or parts thereof may not be reproduced in any form unless permitted bycontract or by written permission of Cray Inc.The gnulicinfo(7) man page contains the Open Source Software licenses (the "Licenses"). Your use of this software release constitutesyour acceptance of the License terms and conditions.U.S. GOVERNMENT RESTRICTED RIGHTS NOTICEThe Computer Software is delivered as "Commercial Computer Software" as defined in DFARS 48 CFR 252.227-7014.All Computer Software and Computer Software Documentation acquired by or for the U.S. Government is provided with RestrictedRights. Use, duplication or disclosure by the U.S. Government is subject to the restrictions described in FAR 48 CFR 52.227-14or DFARS 48 CFR 252.227-7014, as applicable.Technical Data acquired by or for the U.S. Government, if any, is provided with Limited Rights. Use, duplication or disclosure by theU.S. Government is subject to the restrictions described in FAR 48 CFR 52.227-14 or DFARS 48 CFR 252.227-7013, as applicable.Cray, LibSci, UNICOS and UNICOS/ mk are federally registered trademarks and Active Manager, Cray Apprentice2,Cray C++ Compiling System, Cray Fortran Compiler, Cray SeaStar, Cray SeaStar2, Cray SHMEM, Cray Threadstorm, Cray X1,Cray X1E, Cray X2, Cray XD1, Cray XMT, Cray XT, Cray XT3, Cray XT4, CrayDoc, CRInform, Libsci, RapidArray, UNICOS/ lc,and UNICOS/ mp are trademarks of Cray Inc.AMD is a trademark of Advanced Micro Devices, Inc. Copyrighted works of Sandia National Laboratories include: Catamount/ QK,Compute Processor Allocator (CPA), and xtshowmesh. DDN is a trademark of DataDirect Networks. FFTW is Copyright © 2003Matteo Frigo, Copyright © 2003 Massachusetts Institute of Technology. GCC is a trademark of the Free Software Foundation, Inc.Linux is a trademark of Linus Torvalds. Lustre was developed and is maintained by Cluster File Systems, Inc. under the GNUGeneral Public License. MySQL is a trademark of MySQL AB. Opteron is a trademark of Advanced Micro Devices, Inc. PathScaleis a trademark of PathScale, Inc. PBS Pro is a trademark of Altair Grid Technologies. PETSc, Copyright, 1995-2004 University of Chicago. The Portland Group and PGI are trademarks of STMicroelectronics. SUSE is a trademark of SUSE LINUX ProductsGmbH, a Novell business. TotalView is a trademark of TotalView Technologies, LLC. UNIX, the “X device,” X Window System,and X/ Open are trademarks of The Open Group in the United States and other countries. All other trademarks are the propertyof their respective owners.
 
New Features
Cray XT™ Series Programming Environment User's Guide 
S
 – 
2396
 – 
20
Cross compiler platformAdded support of a standalone, cross compiler machine for creating executables to be run onCray XT series systems (seeSection 1.1, page 1).ALPS Added support of ALPS (Application Level Placement Scheduler). ALPS is the applicationlauncher for CNL applications. For further information, seeSection 1.2, page 1.Create node lists by compute node attributesAdded support of the
cnselect
command. You can use
cnselect
to get a candidate listof compute nodes based on node attributes you specify. You can then use this list to launchapplications on compute nodes with those characteristics. For further information seeSection1.2, page1.Target architectureThe target architecture (CNL or Catamount) is set automatically at log in. For furtherinformation, seeSection 2.2, page 9.IRT Added IRT (Iterative Refinement Toolkit) to Cray XT-LibSci. You can use IRT as an efficientalternative to standard LAPACK or ScaLAPACK linear equation solvers. For furtherinformation, seeSection 3.2, page 13.ACML changesThe ACML module is no longer loaded as part of the default
PrgEnv
environment. Forfurther information, seeSection 3.3, page 16.PETSc Added support of PETSc (Portable, Extensible Toolkit for Scientific Computation). For furtherinformation, seeSection 3.5, page 18.OpenMP Added support of OpenMP for PGI, PathScale, and GCC applications that are run on CNLcompute nodes. For further information, seeSection 3.8, page 22.CNL Added support of CNL. CNL is a compute node operating system; sites can use it as analternative to Catamount. For further information, seeChapter 4, page 23.Unsupported PGI compiler command optionsAdded note that the PGI
-mprof=mpi
,
-Mmpi
, and
-Mscalapack
options are not supportedon Cray XT series systems (seeSection 4.1.1.5, page 25).

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