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Beginning Perl for Bioinformatics

Beginning Perl for Bioinformatics

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Published by: bwwcom on Jul 06, 2008
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10/09/2012

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Perl for Bioinformatics
Stuart BrownNYU School of Medicine
 
 
Sources
Beginning Perl for Bioinformatics
James Tisdall, O’Reilly Press, 2000
Using Perl to Facilitate Biological Analysis
 
in
Bioinformatics: A Practical Guide (2nd Ed.)
Lincoln Stein, Wiley-Interscience, 2001
Introduction to Programming and Perl
Alan M. Durham,
Computer Science Dept., Univ. of S
ã
o Paulo, Brazil
 
 
Why Write Programs?
Automate computer work that you do by hand -save time & reduce errorsRun the same analysis on lots of similar data files= scale-upAnalyze data, make decisions
sort Blast results by e-value &/or species of best mach
Build a pipelineCreate new analysis methods

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