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Genetic Algorithm - Wikiped...

Genetic Algorithm - Wikiped...

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Genetic algorithm
From Wikipedia, the free encyclopedia
The
genetic algorithm (GA)
is a search heuristic that mimics the process of natural evolution. This heuristic isroutinely used to generate useful solutions to optimization and search problems. Genetic algorithms belong tothe larger class of evolutionary algorithms (EA), which generate solutions to optimization problems usingtechniques inspired by natural evolution, such as inheritance, mutation, selection, and crossover.
Contents
1 Methodology1.1 Initialization1.2 Selection1.3 Reproduction1.4 Termination2 The building block hypothesis2.1 Criticism of the building block hypothesis3 Observations4 Criticisms5 Variants6 Problem domains7 History8 Related techniques9 Applications10 References11 Bibliography12 External links12.1 Resources12.2 Tutorials
Methodology
In a genetic algorithm, a population of strings (called chromosomes or the genotype of the genome), whichencode candidate solutions (called individuals, creatures, or phenotypes) to an optimization problem, evolvestoward better solutions. Traditionally, solutions are represented in binary as strings of 0s and 1s, but other encodings are also possible. The evolution usually starts from a population of randomly generated individualsand happens in generations. In each generation, the fitness of every individual in the population is evaluated,multiple individuals are stochastically selected from the current population (based on their fitness), and modified(recombined and possibly randomly mutated) to form a new population. The new population is then used in thenext iteration of the algorithm. Commonly, the algorithm terminates when either a maximum number of generations has been produced, or a satisfactory fitness level has been reached for the population. If thealgorithm has terminated due to a maximum number of generations, a satisfactory solution may or may not have been reached.
Genetic algorithm - Wikipedia, the free encyclopediahttp://en.wikipedia.org/wiki/Genetic_algorithm1 of 157/22/2010 10:50 PM
 
Genetic algorithms find application in bioinformatics, phylogenetics, computational science, engineering,economics, chemistry, manufacturing, mathematics, physics and other fields.A typical genetic algorithm requires:a genetic representation of the solution domain,1.a fitness function to evaluate the solution domain.2.A standard representation of the solution is as an array of bits. Arrays of other types and structures can be usedin essentially the same way. The main property that makes these genetic representations convenient is that their  parts are easily aligned due to their fixed size, which facilitates simple crossover operations. Variable lengthrepresentations may also be used, but crossover implementation is more complex in this case. Tree-likerepresentations are explored in genetic programming and graph-form representations are explored inevolutionary programming.The fitness function is defined over the genetic representation and measures the
quality
of the representedsolution. The fitness function is always problem dependent. For instance, in the knapsack problem one wants tomaximize the total value of objects that can be put in a knapsack of some fixed capacity. A representation of asolution might be an array of bits, where each bit represents a different object, and the value of the bit (0 or 1)represents whether or not the object is in the knapsack. Not every such representation is valid, as the size of objects may exceed the capacity of the knapsack. The
 fitness
of the solution is the sum of values of all objects inthe knapsack if the representation is valid, or 0 otherwise. In some problems, it is hard or even impossible todefine the fitness expression; in these cases, interactive genetic algorithms are used.Once we have the genetic representation and the fitness function defined, GA proceeds to initialize a populationof solutions randomly, then improve it through repetitive application of mutation, crossover, inversion andselection operators.
Initialization
Initially many individual solutions are randomly generated to form an initial population. The population sizedepends on the nature of the problem, but typically contains several hundreds or thousands of possible solutions.Traditionally, the population is generated randomly, covering the entire range of possible solutions (the
 search space
). Occasionally, the solutions may be "seeded" in areas where optimal solutions are likely to be found.
Selection
Main article: Selection (genetic algorithm)
During each successive generation, a proportion of the existing population is selected to breed a new generation.Individual solutions are selected through a
 fitness-based 
process, where fitter solutions (as measured by a fitnessfunction) are typically more likely to be selected. Certain selection methods rate the fitness of each solution and preferentially select the best solutions. Other methods rate only a random sample of the population, as this process may be very time-consuming.Most functions are stochastic and designed so that a small proportion of less fit solutions are selected. This helpskeep the diversity of the population large, preventing premature convergence on poor solutions. Popular andwell-studied selection methods include roulette wheel selection and tournament selection.
Reproduction
Genetic algorithm - Wikipedia, the free encyclopediahttp://en.wikipedia.org/wiki/Genetic_algorithm2 of 157/22/2010 10:50 PM
 
Main articles: Crossover (genetic algorithm) and Mutation (genetic algorithm)
The next step is to generate a second generation population of solutions from those selected through geneticoperators: crossover (also called recombination), and/or mutation.For each new solution to be produced, a pair of "parent" solutions is selected for breeding from the pool selected previously. By producing a "child" solution using the above methods of crossover and mutation, a new solutionis created which typically shares many of the characteristics of its "parents". New parents are selected for eachnew child, and the process continues until a new population of solutions of appropriate size is generated.Although reproduction methods that are based on the use of two parents are more "biology inspired", someresearch
[1][2]
suggests more than two "parents" are better to be used to reproduce a good quality chromosome.These processes ultimately result in the next generation population of chromosomes that is different from theinitial generation. Generally the average fitness will have increased by this procedure for the population, sinceonly the best organisms from the first generation are selected for breeding, along with a small proportion of lessfit solutions, for reasons already mentioned above.
Termination
This generational process is repeated until a termination condition has been reached. Common terminatingconditions are:A solution is found that satisfies minimum criteriaFixed number of generations reachedAllocated budget (computation time/money) reachedThe highest ranking solution's fitness is reaching or has reached a plateau such that successive iterationsno longer produce better resultsManual inspectionCombinations of the aboveSimple generational genetic algorithm pseudocodeChoose the initial population of individuals1.Evaluate the fitness of each individual in that population2.Repeat on this generation until termination: (time limit, sufficient fitness achieved, etc.)Select the best-fit individuals for reproduction1.Breed new individuals through crossover and mutation operations to give birth to offspring2.Evaluate the individual fitness of new individuals3.Replace least-fit population with new individuals4.3.
The building block hypothesis
Genetic algorithms are simple to implement, but their behavior is difficult to understand. In particular it isdifficult to understand why these algorithms frequently succeed at generating solutions of high fitness whenapplied to practical problems. The building block hypothesis (BBH) consists of:A description of a heuristic that performs adaptation by identifying and recombining "building blocks", i.e.low order, low defining-length schemata with above average fitness.1.A hypothesis that a genetic algorithm performs adaptation by implicitly and efficiently implementing thisheuristic.2.
Genetic algorithm - Wikipedia, the free encyclopediahttp://en.wikipedia.org/wiki/Genetic_algorithm3 of 157/22/2010 10:50 PM

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