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Table Of Contents

Copyright © 1988-2009 by DNASTAR, Inc
SeqBuilder
Overview
10 Quick-Start Steps for Using SeqBuilder
SeqBuilder tutorials
Create a new feature
Display restriction enzyme sites
Entering an Entrez sequence
Displaying restriction sites based on frequency
Displaying manually chosen restriction sites
Working with SeqBuilder Cloning Projects
Adding custom cloning vectors to a project
Designing Primers in SeqBuilder
Creating a PCR Insert for TA Cloning
Creating a PCR Insert for Restriction Cloning
Further exploration
Creating and removing panes and curtains
Searching the sequence
Using the nine SeqBuilder views
Viewing & editing restriction site information
Exporting to GenVision
SeqMan Pro
10 Quick-Start Steps for Using SeqMan
SeqMan tutorials
Assembling Trace Data in SeqMan Pro
Preparing sequences for assembly
Viewing trace data
Assembling & checking coverage
Comparing consensus & restoring sequence ends
Using paired end specifier parameters
Assembling 454™ Data in SeqMan Pro
Assembling Sequences in Groups
Designing sequencing primers and improving the coverage
Discovering SNPs
Working with features
Importing Phrap data
Using the vector catalog
Handling repetitive & contaminant sequences
Negating weights
Exporting data
MegAlign
10 Quick-Start Steps for Using MegAlign
MegAlign tutorials
Entering sequences using drag and drop
Setting ends using features
Performing a pairwise alignment
Performing a Dot Plot pairwise alignment
Performing a multiple alignment
Creating an alignment report
Creating an alignment using a portion of the sequences
Realigning residues
Working with the Alignment Report
Opening an Existing Project and Organizing Methods
Applying Methods to the Sequence
Predicting Coding Regions and Creating Features
Corroborating Predictions by BLAST Search
Checking Predictions against External Data
Additional analyses
Using the microscope view
Changing method parameters
Changing formatting options
Using method outlines
Protean
10 Quick-Start Steps for Using Protean
Protean tutorials
Correlating annotations with predicted structures
Calculating methods with different parameters
PrimerSelect
Defining primer design criteria
Searching for primer pairs
Viewing composition & hairpin reports
Changing primer length
10 Quick-Start Steps for using EditSeq
EditSeq tutorials
Opening a subset of a sequence
Locating Open Reading Frames
Adding a feature with a translation
Copying and translating sequences
Importing and exporting sequences
Changing layout options
Proofreading a sequence
Complementing, reversing and translating sequence
Integration
Synchronous updating
Opening and modifying a file in two applications
Adding a feature to a file in two applications
Online database searches
Setting up preferences
Specifying online server addresses
Specifying a download folder
Performing a BLAST search
BLAST search results window
Performing a text search
Text results search window
Changing a text query
Searching Text Search Query Results
Working with search results windows
Selecting one or more results
Opening results in a Lasergene application
Viewing results in a web browser
Saving multiple search results
Printing BLAST search results
Printing text search results
Copying results
Saving search results as text files
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GettingStartedGuide8.1

GettingStartedGuide8.1

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Published by: megsp85 on Mar 18, 2011
Copyright:Attribution Non-commercial

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