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Table Of Contents

Layer 1–EBTools
1.1 Introduction
1.2 Overview of Embedded Boundary Description
1.3 Derived Quantities
1.3.1 Interface Normal and Area
1.4 Overview of API Design
1.5 Data Structures for Graph Representation
1.5.1 Class EBIndexSpace
1.5.2 Class GeometryService
1.5.3 Class EBISBox
1.5.4 Class EBISLayout
1.5.5 Class VolIndex
1.5.6 Class FaceIndex
1.6 Data Holders for Embedded Boundary Applica-
1.6.1 Class BaseIFFAB<T>
1.6.2 Class BaseIVFAB<T>
1.6.3 Class BaseEBCellFAB<T>
1.6.4 Class EBCellFAB
1.6.5 Class BaseEBFaceFAB<T>
1.6.6 Class EBFaceFAB
1.7 Data Structures for Pointwise Iteration
1.7.1 Class VoFIterator
1.8.2 HDF5 Data File Description
1.8.2.1 EBData file
1.8.3 I/O API
1.9 Usage Patterns
1.9.1 Creating a GeometryService Object
1.9.2 Creating Data Holders and Geometric Information
1.9.3 Finite Difference Calculations using EBChombo
1.10 Landmines
1.10.1 Data Holder Architecture
1.10.1.1 Update-in-Place difficulties
1.10.1.2 Norms and other Agglomerations of Data
1.10.1.3 Stencil Size and Data Holders
1.10.2 Sending Irregular Data to Fortran
2.0.3 Constructive Solid Geometry
Layer 2–EBAMRTools
3.1 Introduction
3.2 Notation
3.3 Conservative Averaging
3.4 Interpolation Operations
3.4.1 Piecewise Linear Interpolation
3.4.2 Piecewise-Linear Coarse-Fine Boundary Interpolation
3.4.3 Quadratic Coarse-Fine Boundary Interpolation
3.4.3.1 Interpolation to non-corner ghost cells Ωe,f
3.5.2 Coarse to Fine Redistribution
3.5.3 Fine to Coarse Redistribution
3.5.4 Coarse to Coarse Redistribution
3.6 Refluxing
3.7 Subcycling in time with embedded boundaries
3.8 EBAMRTools User Interface
3.8.1 Classes EBCoarseAverage/EBCoarsen
3.8.2 Class EBPWLFineInterp
3.8.3 Class EBPWLFillPatch
3.8.4 Class RedistStencil
3.8.5 Class EBLevelRedist
3.8.6 Class EBFluxRegister
3.8.7 Class EBCoarToFineRedist
3.8.8 Class EBFineToCoarRedist
3.8.9 Class EBCoarToCoarRedist
3.8.10 Class EBQuadCFInterp
Layer 3—EBAMRElliptic
4.1 Introduction
4.2 Poisson’s equation
4.2.1 Operator Discretization
4.2.1.1 Notation
4.2.1.2 Interior Method
4.2.1.3 Boundary Conditions
4.2.1.4 Homogeneous Dirichlet Boundary Condition at Faces
4.2.2 Relaxation Method
4.2.3 Multigrid Algorithm
4.2.4 Projection discretization
4.2.5 Extrapolation to Covered Faces
4.2.5.1 Two-dimensional Extrapolation
4.2.5.2 Extrapolation to Covered Face in Three Dimensions
4.2.6 Stability of the approximate projection
4.2.7 Viscous operator discretization
4.2.8 Slope Calculation
4.2.9 Convergence Tests
4.3 Viscous Tensor Equation
4.3.1 Discretization
4.3.2 Flux at the Boundary
4.3.3 Convergence Tests
4.4 Conducivity Equation
4.4.1 Discretization
4.4.2 Flux at the Boundary
4.5 Overview
4.6 EBPoissonOpFactory
4.7 EBAMRPoissonOpFactory
4.8 EBAMRTGA
4.9 EBCompositeMACProjector
4.10 EBCompositeCCProjector
4.11 Example
4.12 Snippet to solve Poisson’s equation
4.13 Snippet to Project a Cell-Centered Velocity Field
Example 1–EBAMRGodunov
5.1 Introduction
5.2 Notation
5.3 Equations of Motion
5.4 Approximations to ∇·F
5.5 Flux Estimation
5.5.1 Flux Estimation in Two Dimensions
5.5.2 Flux Estimation in Three Dimensions
5.5.3.4 Flux Registers
5.5.4 Artifical Viscosity
5.6 Slope Calculation
5.6.1 Flattening
5.7 Computing fluxes at the irregular boundary
5.8 Results
5.9 Class Hierarchy
5.9.1 Class EBAMRGodunov
5.9.2 Class EBLevelGodunov
5.9.3 Class EBPatchGodunov
5.9.4 Class EBPhysIBC
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Published by: aramchik on May 18, 2011
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