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Protein Modeling

Protein Modeling

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Published by: Srigiriraju Vedavyas on Mar 25, 2012
Copyright:Attribution Non-commercial

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10/13/2014

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Protein Modeling 
 
March 25, 2012 2March 25, 2012 2
Topics to be discussed
Introduction
Comparative modeling
Homology modeling
Energy Minimization
Validation methods
Protein modeling tools
 
March 25, 2012 3March 25, 2012 3
Introduction
Protein structure prediction is theprediction of the three-dimensionalstructure of a protein from its amino acidsequence- Prediction of its tertiary structure from itsprimary structure
Protein structure prediction is one of themost important goals pursued by
bioinformatics and theoretical chemistry
- Highly important in medicine (for example,in drug design) and biotechnology (forexample, in the design of novel enzymes)
Two most common methods to do this are
x-ray diffraction
and
nuclear magneticresonance
Modeled structure is stored in a database(PDB) as data giving the x,y,z coordinates of each atom

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