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BioPython for Bioinfo

BioPython for Bioinfo



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Published by: kasargod_a on Jan 07, 2009
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Python course in Bioinformatics
by Katja Schuerer and Catherine Letondal
Python course in Bioinformatics
by Katja Schuerer and Catherine LetondalCopyright © 2008 Pasteur Institute [http://www.pasteur.fr/]Introduction to Python [http://www.python.org/] and Biopython [http://www.biopython.org/] with biologicalexamples.The picture above represents the 3D structure of the Human Ferroxidase [http://srs.ebi.ac.uk/srs6bin/cgi-bin/wgetz?-id+4SU6q1IomZ3+-e+[SWALL:’CERU_HUMAN’]] protein, that we use in some of the exercisesin this course.This course is designed for biologists who already have some programming knowledge, in other languagessuch as perl or C. For this reason, while presenting a substantial introduction to the Python language,it does not constitute an introduction to programming itself (as [Tis2001] or our course in informaticsfor biology [http://www.pasteur.fr/formation/infobio/infobio-en.html], with an online programming course[http://www.pasteur.fr/formation/infobio/python/] in Python). What distinguishes this course from general Pythonintroductory courses, is however the important focus on biological examples that are used throughout the course,as well as the suggested exercises drawn from the field of biology. The second half of the course describes theBiopython (http://www.biopython.org/) set of modules. This course can be considered a complement to theBiopython tutorial, and what’s more often refers to it, by bringing practical exercises using these components.Contact: help@pasteur.fr [mailto:help@pasteur.fr]
Comments are welcome.PDF version of this course [support.pdf]

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