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NMR

NMR

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Sections

  • 1.1 The Bloch equations:
  • 1.2 Quantum-mechanical treatment:
  • 1.3 The macroscopic view:
  • 1.4 Fourier Transform NMR:
  • 1.9 The intensity of the NMR signal:
  • 1.1 The magnet system:
  • 1.3 The shim system:
  • 1.4 The lock-system:
  • 1.5 The transmitter/receiver system:
  • 2. BASIC DATA ACQUISITION PARAMETER
  • 1. ACQUISITION OF 1D SPECTRA
  • 1.1 Calibration of pulse lengths:
  • 1.2 Tuning the probehead:
  • 1.3 Adjusting the bandwidth of the recorded spectrum:
  • 1.5 Phase Correction
  • 1.6 Zero-filling and the resolution of the spectrum
  • 1.7 Resolution enhancement and S/N improvement
  • 1.7.1 Exponential multiplication:
  • 1.7.2 Lorentz-to-Gauss transformation:
  • 1.7.3 Sine-Bell apodization:
  • 1.8 Baseline Correction
  • 1.9 Linear prediction:
  • 1.1 The diamagnetic effect:
  • 1.2 The paramagnetic term:
  • 1.3 Chemical shift anisotropy:
  • 1.7 Solvent effects:
  • 1.8 Shifts due to paramagnetic species:
  • 2.1 Direct couplings (1
  • 2.2 Geminal couplings (2
  • 2.3 Vicinal couplings (3
  • 2.4 Long-range couplings:
  • 2.6 The number of lines due to scalar spin,spin couplings:
  • 2.7 Strong coupling:
  • 1. RELAXATION:
  • 1.3 The mechanisms of relaxation:
  • 1.4 Other relaxation mechanisms:
  • 1.4.1 Chemical shift anisotropy (CSA):
  • 1.4.3 Quadrupolar relaxation:
  • 1.4.5 Interaction with unpaired electrons:
  • 1.5 The motional properties:
  • 1.6 Excurs: The Lipari-Szabo model for motions:
  • 1.7 The nature of the transitions:
  • 1.8 Measurement of relaxation times:
  • 1.1 Experiments to measure NOEs:
  • 1.2 The steady-state NOE:
  • 1.3 The transient NOE:
  • 1.4 The state of the spin system and the density matrix:
  • 1.5 The sign of the NOE:
  • 1.7 Practical tips for NOE measurements:
  • 1.1 Two-site exchange:
  • 1.1.2 The slow exchange limit:
  • 1.1.3 The intermediate case:
  • 1.2 Investigation of exchange processes:
  • 1.3 Determination of activation parameters:
  • 1.2 Chemical shift precession:
  • 1.3 Scalar spin,spin coupling:
  • 1.4 A simple one-dimensional NMR experiment:
  • 1.5 The effect of 180 degree pulses:
  • 1.6 Coherence transfer:
  • 1.7 Polarization transfer:
  • C polarization transfer)
  • 1.0.1 The preparation period:
  • 1.0.5 Hetcor and inverse-detection experiments:
  • 1.2 An Alternative: Pulsed Field Gradients
  • 1.3 Hybrid 2D techniques:
  • 1.4 Overview of 2D experiments:
  • 1.5 Original references for 2D experiments:
  • 1.1 The chemical shift
  • 1.2 Dipolar couplings:
  • 1.3 Magic Angle Spinning (MAS)
  • 1.4 Sensitivity Enhancement:
  • 1.5 Recoupling techniques in SS-NMR:
  • 1.6 SS-NMR of oriented samples:
  • 1.7 Labeling strategies for solid-state NMR applications:

L

ECTURE

COURSE: NMR S

PECTROSCOPY



1

Table of Content

The physical basis of the NMR experiment

5
The Bloch equations: 8
Quantum-mechanical treatment: 9
The macroscopic view: 10
Fourier Transform NMR: 14
The interaction between the magnetization and the additonal
RF (B1) field: 14
Description of the effect of the B1 field on transverse and lon-
gitudinal magnetization using the Bloch equations: 16
The excitation profile of pulses: 17
Relaxation: 18
The intensity of the NMR signal: 20

Practical Aspects of NMR:

The components of a NMR instrument
The magnet system: 22
The probehead: 23
The shim system: 25
The lock-system: 28
The transmitter/receiver system: 28
Basic data acquisition parameter 31
Acquisition of 1D spectra 36
Calibration of pulse lengths: 36
Tuning the probehead: 38
Adjusting the bandwidth of the recorded spectrum: 39

Data processing:

40
Phase Correction 43
Zero-filling and the resolution of the spectrum 46
Resolution enhancement and S/N improvement 47
Exponential multiplication: 48
Lorentz-to-Gauss transformation: 48
Sine-Bell apodization: 49
Baseline Correction 50
Linear prediction: 51

The chemical shift:

53
The diamagnetic effect: 53
The paramagnetic term: 54
Chemical shift anisotropy: 56
Magnetic anisotropy of neighboring bonds and ring current
shifts: 57
Electric field gradients: 59
Hydrogen bonds: 59
Solvent effects: 60
Shifts due to paramagnetic species: 60

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2

Scalar couplings:

60
Direct couplings (1J): 62
Geminal couplings (2J): 63
Vicinal couplings (3J): 63
Long-range couplings: 65
Couplings involving p electrons: 65
The number of lines due to scalar spin,spin couplings: 65
Strong coupling: 67

Relaxation:

68
T1 relaxation: 68
T2 relaxation: 69
The mechanisms of relaxation: 70
Other relaxation mechanisms: 72
Chemical shift anisotropy (CSA): 72
Scalar relaxation: 72
Quadrupolar relaxation: 73
Spin-rotation relaxation: 73
Interaction with unpaired electrons: 73
The motional properties: 73
The dependence of the relaxation rates on the fluctuating fields
in x,y or z direction: 75
Excurs: The Lipari-Szabo model for motions: 77
The nature of the transitions: 78
Measurement of relaxation times: 80

The Nuclear Overhauser Effect (NOE):

84
Experiments to measure NOEs: 86
The steady-state NOE: 87
Extreme narrowing (hmax >0): 87
Spin-diffusion (hmax <0): 88
The transient NOE: 89
The state of the spin system and the density matrix: 90
The sign of the NOE: 92
Why only zero- and double-quantum transitions contribute to
the NOE 94
Practical tips for NOE measurements: 96

Chemical or conformational exchange:

99
Two-site exchange: 99
Fast exchange: 101
The slow exchange limit: 102
The intermediate case: 102
Investigation of exchange processes: 103
EXSY spectroscopy: 103
Saturation transfer: 104
Determination of activation parameters: 105

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3

The product operator formalism (POF) for description of pulse-experiments:

106
RF pulses: 107
Chemical shift precession: 107
Scalar spin,spin coupling: 108
A simple one-dimensional NMR experiment: 110
The effect of 180 degree pulses: 111
Coherence transfer: 112
Polarization transfer: 113

Two-Dimensional NMR Spectroscopy:

118
The preparation period: 120
The evolution period: 121
The mixing period: 122
The detection period: 124
Hetcor and inverse-detection experiments: 124
Phasecycling: 125
An Alternative: Pulsed Field Gradients 126
Hybrid 2D techniques: 128
Overview of 2D experiments: 129
Original references for 2D experiments: 130

Solid State NMR Spectroscopy:

132
The chemical shift 132
Dipolar couplings: 135
Magic Angle Spinning (MAS) 136
Sensitivity Enhancement: 136
Recoupling techniques in SS-NMR: 137
SS-NMR of oriented samples: 140
Labeling strategies for solid-state NMR applications: 142

L

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COURSE: NMR S

PECTROSCOPY



4

A

PPLICATION

F

IELDS



OF

NMR S

PECTROSCOPY

High-resolution NMR spectroscopy

Analytics
"small" molecules
determination of the covalent structure
determination of the purity
Elucidation of the 3D structure
"small" molecules
determination of the stereochemistry: cis,trans isomerism,
determination of optical purity
Biopolymers up to about 20-30 kDa
determination of the 3D solution structure

provided



the pri-
mary sequence is known!

investigation of the interaction of molecules (complexes)
investigation of the dynamics of proteins

1

H,

13

C or

15

N relaxation measurements

1

H,

1

H oder

1

H,

15

N NOE measurements
Determination of the kinetics of reactions

Solid-state NMR spectroscopy

insoluble compounds (synthetic polymers)
very large compounds (requires specific labels)
determination of the structure in the solid-state (vs. liquid-state)
determination of the dynamics in the solid-state

Imaging techniques

spin tomography

"In vivo" NMR spectroscopy

distribution of metabolites in the body

L

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C

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: NMR S

PECTROSCOPY



First Chapter: Physical Basis of the NMR Experiment Pg.5

1. T

HE



PHYSICAL



BASIS



OF



THE

NMR

EXPERIMENT

Imagine a charge travelling circularily about an axis. This is similar to a current
that flows through a conducting loop:
Such a circular current builds up a magnetic moment

µ

whose direction is per-
pendicular to the plane of the conducting loop. The faster the charge travels
the stronger is the induced magnetic field. In other words, a magnetic dipole
has been created.
Such dipoles, when placed into a magnetic field, are expected to align with the
direction of the magnetic field. In the following we will look at a mechanical
equivalent represented by a compass needle that aligns within the gravita-
tional field:
When such a compass needle is turned away from the north-pole pointing
direction to make an angle

φ

a force acts on the needle to bring it back. For the
case of a dipole moment that has been created by a rotating charge this force is
proportional to the strength of the field (

B

) and to the charge (

m

).
The

torque

that acts to rotate the needle may be described as
in which

J

is defined as the

angular momentum

which is the equivalent for rota-

FIGURE 1.
FIGURE 2.
µ
N
φ
T
t ∂
∂J
r F × = =

L

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: NMR S

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First Chapter: Physical Basis of the NMR Experiment Pg.6

tional movements of the linear momentum.
Note that the direction of the momentum is tangential to the direction along
which the particle moves. The torque is formed by the vector product between
the radius and the momentum (see additional material) and is described by a
vector which is perpendicular to both radius and momentum. In fact, it is the
axis of rotation which is perpendicular to the plane. The corresponding poten-
tial energy is
In contrast to the behaviour of a compass needle the nuclear spin does not
exactly align with the axis of the external field:

FIGURE 3. Left: linear momentum. Right: angular momentum
FIGURE 4. Rotation of the nuclear momentum about its own axis (blue) and about the magnetic field axis (red).
p = m v
J = r x p
Excurse: Corresponding parameter for translational and rotational movements
PureTranslation (fixed direction) Pure Rotation (fixed axis)
Position x θ
Velocity v = dx/ dt ω =dθ/ dt
Acceleration a = dv/ dt α = dω/ dt
Translational (Rot.) Inertia m I
Force (Torque) F T = r x F
Momentum p = mv J = r x p
Work W = Int F dx W = Int T dθ
Kinetic energy
K = 1/ 2 mv
2
K = 1/2 Iω
2
Power P = F v P = Τ ω
E
pot
T ϕ d
0
ϕ

– =
B
ω
LECTURE COURSE: NMR SPECTROSCOPY
First Chapter: Physical Basis of the NMR Experiment Pg.7
This is a consequence of its rotation about its own axis. This property is called
spin. It rotates (spins) about its own axis (the blue arrow) and precesses about
the axis of the magnetic field B (the red arrow). The frequency of the precession
is proportional to the strength of the magnetic field:
ω = γ B
The proportionality constant is called the gyromagnetic ratio.
The frequency ω is expressed in terms of a angular velocity (see additional
material). It is specific for the kind of nucleus and therefore has a different
value for
1
H,
13
C,
19
F etc. The precession frequency
ω
0
= ν
ο
2 π
is called the Lamor frequency. In contrast to a compass needle which behaves
"classically" in the way that it can adopt a continous band of energies depend-
ing only on the angle φ it makes with the field the corresponding angle φ of the
nuclear dipole moment is quantitized. Hence, we will later introduce the quan-
tum-mechanical treatment shortly.
Of course, we do not observe single molecules but look at an ensemble of mol-
ecules (usually a huge number of identical spins belonging to different mole-
cules). The sum of the dipole moments of identical spins is called
magnetization:
Excurse: The movement of a classical gyroscope
Imagine a wheel fixed to a shaft. When the this gyroscope is placed with the shaft perpendicular to the
ground and released it will fall down (see Fig. below, left side). However, when the wheel spins about
the axis of the shaft, the gyroscope precesses about the axis perpendicular to the ground with a fre-
quency ω that is called the precession frequency (right side) and takes a well-defined angle φ with
respect to the rotation axis:
ω
φ

M µ
i
j

=
LECTURE COURSE: NMR SPECTROSCOPY
First Chapter: Physical Basis of the NMR Experiment Pg.8
1.1 The Bloch equations:
The Bloch’s equations describe the fate of magnetization in a magnetic field.
We have stated before that a force ( a torque) acts on a dipole moment when it
is placed inside a mgnetic field such that the dipole moment will be aligned
with the direction of the static magnetic field. Mathematically this is decribed
by forming the vector product between dipole moment and magnetic field (see
add. material for the mathematics involved):
Considering that (see page 2)
and that
we find that
which describes the time-evolution of the magnetization.
In the absence of an additional B
1
field the components of the field along the
cartesian axes are:
B
x
= 0
B
y
= 0
B
z
= B
o
which leads to the following set of coupled differential equations:
In order to drive the system into the equilibrium state (no transverse coher-
ence, relative population of the α/ β states according to the Boltzmann distri-
bution) additional terms have been phenomenologically introduced such as
M
x
/ T
2
for the M
x
component.
T M B × =
T
t ∂
∂J
=
M µ
i
i

γ J
i
i

= =
t ∂
∂M
γ
t ∂

J γT γ M B × ( ) = = =
t ∂

M
x
t ( )
γ M
y
B
0
M
x
T
2
t ∂

M
y
t ( )
γ – M
x
B
0
M
y
T
2
⁄ –
=

t ∂

M
z
t ( ) M
z
M –
0
( ) – T
1
⁄ =

=
LECTURE COURSE: NMR SPECTROSCOPY
First Chapter: Physical Basis of the NMR Experiment Pg.9
The solutions to these equations are given by:
The first two equations describe mathematically a vector that precesses in a
plane (see add. mat.) and hence give the correct description for what we will be
looking at in a rather pictorial way in the following.
1.2 Quantum-mechanical treatment:
The dipole moment µ of the nucleus is described in quantum-mechanical terms
as
Therein, J is the spin angular momentum and γ the gyromagnetic ratio of the
spin. When looking at single spins we have to use a quantum-mechanical treat-
ment. Therein, the z-component of the angular momentum J is quantitized
and can only take discrete values
where m is the magnetic quantum number. The latter can adopt values of m = -
I, -I+1, …,0,...,I-1, I

with I being the spin quantum number.
For I=1/ 2 nuclei, m can only be +1/ 2 or -1/ 2, giving rise to two distinct energy
levels. For spins with I=1 nuclei three different values for J
z
are allowed:
FIGURE 5. Vectorial representation of the z-component of the angular momentum for a spin I=1/2 (left) and spin
I=1 (right) nucleus.
M
x
t ( ) M
x
0 ( ) ωt cos M
y
– 0 ( ) ωt sin [ ]e
t T2 ⁄ – ( )
M
y
t ( ) M
x
0 ( ) ωt sin M
y
0 ( ) ω cos t + [ ]e
t T2 ⁄ – ( )
M
z
t ( ) M
eq
M
z
0 ( ) M
eq
– [ ] + e
t T1 ( ) ⁄ – ( )
=
=
=
µ = γ J
J
z
= m
h

H
z
I=1
J
z
= +
J
z
= -
h
J
z
= 0


h

H
z
I=1/2
J
z
= +
J
z
= -
h

h

LECTURE COURSE: NMR SPECTROSCOPY
First Chapter: Physical Basis of the NMR Experiment Pg.10
The energy difference ∆E
pot
, which corresponds to the two states with m=±1/
2, is then
(the quantum-mechanical selection rule states, that only transitions with ∆m=
±1 are allowed):
1.3 The macroscopic view:
The NMR experiment measures a large ensemble of spins derived from a
huge number of molecules. Therefore, we now look at the macroscopic bevav-
iour. The sum of the dipole moments of all nuclei is called magnetization. In
equilibrium the spins of I=1/ 2 nuclei are either in the α- or β-state and precess
about the axis of the static magnetic field. However, their phases are not corre-
lated. For each vector pointing in one direction of the transverse plane a corre-
sponding vector can be found which points into the opposite direction:
FIGURE 6. Energy levels of the α- and β- states of I=1/ 2 nuclei
FIGURE 7. Equilibrium state with similarily populated α- and β-states (left), uncorrelated phases (middle) and no
net phase coherence (right).
E
pot
= µ
z
B = γ J B
α
β
B
o
= 0 B
o
≠ 0
Ε
∆E=hν
+ 1/ 2 γ h/ 2π B
- 1/ 2 γ h/ 2π B
H
z
m= +1/ 2
m= - 1/ 2
J
z
= +
J
z
= -
h
h


B
o=z
y
x x
y
x
y
Σ
B
o=z
y
x x
y
x
y
Σ
E
pot
= γ
h

B
LECTURE COURSE: NMR SPECTROSCOPY
First Chapter: Physical Basis of the NMR Experiment Pg.11
Therefore, the projection of all vectors onto the x,y plane (the vector sum of the
transverse components) is vanishing provided that the phases of the spins are
uncorrelated.
However, application of a radiofrequency (RF) field perpendicular to the mag-
netic field (e.g. along the x- or y-axis), the so-called B
1
field, creates a state in
which the phases of the spins are partially correlated. This state is called coher-
ence. When projecting the vectors onto the x,y plane the resulting transverse
magnetization is non-vanishing giving rise to a signal in the detection coil.
When the motions of spins are described in vector diagrams most frequently
only the vector sum of the spins is shown in order to simplify it.
The magnitude and direction of the magnetization vector can be calculated by
vectorial addition of the separate dipole moments.
This is shown in the following figure in which the vector sum of longitudinal
(blue) and transverse (yellow) magnetization of uncorrelated spins which are
only in the α-state (A) or in both states (B) is displayed as well as for correlated
states (C and D): It is evident that only for correlated states transverse magneti-
zation (magnetization in the x,y plane) is observed. Only transverse magneti-
zation leads to a detectable signal in the receiver coil and hence contributes to
the NMR signal. Therefore, only the vector sum of the transverse component is
FIGURE 8. Coherent state of spins in α- or β(left) states and the projection onto the x,y plane(middle) and sum
vector of the x,y component.
B
o=z
y
x
x
y
x
y
Σ
LECTURE COURSE: NMR SPECTROSCOPY
First Chapter: Physical Basis of the NMR Experiment Pg.12
shown to describe the relevant part of the spins:
The experiment setup of the spectrometer includes a radiofrequency coil,
which delivers the orthogonal B
1
field. Simultaneously this coil serves to pick
up the NMR signal. To understand how the magnetization that rotates in the
transverse (x,y) plane induces the NMR signal it is convenient to look at the
vector sum of the transverse components which present a magnetic field that
rotates in space:
The magnitude of the current that is induced in the receiving coil depends on
the orientation of the magnetization vector with respect to the coil. When the
FIGURE 9. Different states of the spin system (see text).
FIGURE 10. Spins precessing at different velocities (and hence have different chemical shifts) are color coded.
B
o=z
y
x
B
o=z
y
x
B
o=z
y
x
B
o=z
y
x
B
o=z
y
x
B
o=z
y
x
B
o=z
y
x
B
o=z
y
x
A
C
B
D
z
y
x
z
y
x
z
y
x
∆t
2∆t
LECTURE COURSE: NMR SPECTROSCOPY
First Chapter: Physical Basis of the NMR Experiment Pg.13
magnetization is pointing towards the coild the induced current is at maxi-
mum. Because the magnetization rotates the induced current follows a sine (or
cosine) wave (see additional material). Spins with different chemical shift, dif-
ferent larmor frequencies, precess at different rates and hence the frequency of
the current is the larmor frequency, e.g. the frequency of the precessing spins: .
In the picture above the induced current is shown for different orientations of
the transverse magnetization.
This situtation is very similar to a conducting loop that rotates in a magnetic
field as encountered in a generator:
However, in the generator the (coil) loop is rotating and the magetic field is
stationary, opposite to the situation in a NMR experiment. The amplitude of
the induced current is following a (co) sine wave. Similarily, the rotating
dipoles in NMR create a sine-modulated current.
FIGURE 11. Left:Rotating spin with its position at certain time intervals 1-6 are marked. Right: Corresponding
signal in the receiver coil.
FIGURE 12. Left: Conducting loop rotating in a magnetic field with corresponding current induced (right).
z
y
x
1
2
3
4
5
6
I
Det
t
1
2
3
4
5
6
T
I
t
N
S
LECTURE COURSE: NMR SPECTROSCOPY
First Chapter: Physical Basis of the NMR Experiment Pg.14
1.4 Fourier Transform NMR:
Spins that belong to nuclei with different chemical environment precess with
different frequencies. For more complex compounds that contain many differ-
ent spins the signal in the receiver coil is a superposition of many different fre-
quencies. The Fourier Transformation is a convenient mathematical tool for
simultaneous extraction of all frequency components. It allows to transform
data from the time into the frequency domain:
In reality, the magnetization does not precess in the transverse plane for infi-
nite times but returns to the z-axis. This phenomenon is called relaxation and
leads to decreasing amplitude of signal in the detector with time.
1.5 The interaction between the magnetization and the additonal RF (B
1
) field:
When only the static B
0
field is present the spins precess about the z-Axis (the
axis of the B
0
field). To create spin-coherence an additional RF field is switched
on, that is perpendicular to the axis of the static field (the so-called B
1
field). To
emphazise that this field is turned on for only a very short period of time usu-
ally it is called a (RF) pulse. During the time where B
0
and B
1
field are both
present the magnetization rotates about the axis of the resulting effective field.
FIGURE 13. Signals from 3 spins with different precession frequencies (left) and their corresponding Fourier
transforms (right)
I(t )
FT
- → - I(ν)
t
t
Α
Β
C
ν
Α Β
C
FT
I(det)
LECTURE COURSE: NMR SPECTROSCOPY
First Chapter: Physical Basis of the NMR Experiment Pg.15
This effective field is calculated by taking the vector sum of the B
0
and B
1
field:
Now, the B
0
field is larger than the B
1
field by many orders of magnitude (for
protons, the B
0
field corresponds to precession frequencies of hundreds of
MHz whereas the B
1
field is about 1-20 KHz). If the B
1
field would be applied
fixed along the x-axis all the time it would have an negligible influence onto
the spins. However, the B
1
field is not static but rotates about the z-axis (the
axis of the static field) with a frequency that is very similar to the precession
frequency of the spins about the z-axis. To understand the effect of the rotating
B
1
field, it is very convenient to transform into a coordinate system that rotates
with the precession frequency ω
o
of the B
0
field (in the picture above that
means that the small "blue" man jumps onto a platform that rotates with the
larmor frequency of the spin. This operation transforms from the laboratory
frame to a rotating frame, e.g. a frame in which the coordinate system is not
fixed but rotates with ω
ο
):
For those spins whose lamor frequency is exactly ω
ο
the effective B
o
field they
FIGURE 14. Movement of spins in the presence of only the B
0
field (left), B
o
and B
1
field (middle) and vector
additon to calculate the effective field formed by B
o
and B
1
FIGURE 15. left: Static B
o
field and rotating B
1
field. middle: Laboratory frame frequencies, right: Rotating frame
frequencies.
B
o
B
1
B
eff
B
o
ω
0
B
o
ω
1
B
1
ω
0
ω − ω
0
ω B
o
B
1
ω
0
x
y
B
o
ω
B
o
ω
LECTURE COURSE: NMR SPECTROSCOPY
First Chapter: Physical Basis of the NMR Experiment Pg.16
experience in such a rotating reference frame is zero. These spins then only feel
the effect of the B
1
field and precess about the B
1
axis as long as the B
1
field is
turned on. Spins that have a slightly different precession frequency ω the
strength of the B
0
field is
B’=B
0
-ω/γ
(For ω=ω
0
, B’ is zero).
During RF pulses spins which are exactly on-resonance (e.g. whose precession
frequency is equal to the precession frequency of the B
1
field about the z-axis)
only feel the B
1
field. These spins precess about the axis of the B
1
field until the
B
1
field is turned off again:
The overall flip-angle they have experienced during that time t
p
is
α = γ B
1
t
p
Usually the pulse lengths t
p
are choosen such that the flip angle α is 90 or 180
degrees. As stated above the effect of the B
1
field is to create phase coherence
amongst the spins. The macroscopic effect of coherent spins is transverse mag-
netization.
1.6 Description of the effect of the B
1
field on transverse and longitudinal
magnetization using the Bloch equations:
We have seen before that
Now,
B
x
= B
1
cosω
0
t
FIGURE 16. 1
st
: Vectorial addition of B
1
and B
o
field. 2
nd
: Direction of the effective field for spins exactly on-
resonance, 3
rd
more off-resonance, 4
th
far off-resonance.
B’
B
1
B
eff
B
eff
B
eff
B
1
B’
B
0

-

ω
/
γ
B
1
B
eff
ω
o
ω
o
ω
o
t ∂
∂M
γ M B × ( ) =
LECTURE COURSE: NMR SPECTROSCOPY
First Chapter: Physical Basis of the NMR Experiment Pg.17
B
y
= B
1
sinω
0
t
B
z
= B
o
and hence
To solve these equations they are conveniently transformed into a reference
frame that rotates at the frequency ω
0
about the z-axis. Therein
In this "primed" coordinate system the equations become:
The solutions are rather involved and will not presented here since the signals
are usually recorded when only the B
0
field is present nowadays. However, it
is important to see that in this frame the effect of the B
1
field on transverse
magnetization aligned along the y' axis is to rotate it about x' with a frequency
of ω
1
= γ B
1
.
1.7 The excitation profile of pulses:
A pulse is a poly-chromatic source of radiofrequency and it covers a broad band
of frequencies. The covered band-width is proportional to the inverse of the
pulse duration. Short pulses are required for uniform excitation of large band-
widths, long (soft) pulses lead to selective excitation. Usually the non-selective
(hard) pulses have B
1
fields of the order of 5-20 kHz and pulselengths of 5-20
µs, whereas selective (soft) pulses may last for 1-100 ms with an appropriately
t ∂

M
x
t ( ) γ M (
y
B
0
M
z
B
1
ω
0
t ) sin + M
x
T
2
⁄ ( )
t ∂

M
y
t ( ) γ M
x
B
0
M
z
– B
1
ω
0
cos t ( ) – M
y
T
2
⁄ ( )
t ∂

M
z
t ( ) γ M
x
B
1
ω
0
t M
y
+ sin B
1
ω
0
cos t ( ) – M
z
M
0
– ( ) T
1
⁄ – =
– =
– =
M
x

M
x
ω
0
t M
y
ω
0
t
M
y

M
x
ω
0
t M
y
ω
0
cos t + sin =
sin – cos =
t ∂
∂M
x

ω
0
ω – ( )M
y

M
x

T
2
⁄ ( )
t ∂
∂M
y

ω
0
ω – ( ) – M
x

γ B
1
M
z
M
y

T
2

t ∂
∂M
z


γ B
1
M
y

M
z
M
0
– ( ) T
1
⁄ – – =
+ =
– =
LECTURE COURSE: NMR SPECTROSCOPY
First Chapter: Physical Basis of the NMR Experiment Pg.18
attenuated RF amplitude:
1.8 Relaxation:
The magnetization does not precess infinitely in the transverse plane but
turnes back to the equilibrium state. This process is called relaxation. Two dif-
ferent time-constants describe this behaviour:
a) the re-establishment of the equiilibirum α/β state distri-
bution (T1)
b) dephasing of the transverse component (destruction of
the coherent state, T2). The T2 constant characterizes the
exponential decay of the signal in the receiver coil:
The precessing spins slowly return to the z-axis. Instead of moving circularily
in the transverse plane they slowly follow a spiral trajectory until they have
FIGURE 17. Left: Excitation profile of a “hard” pulse, right: Ex. profile of a “soft” (long) pulse
FIGURE 18. Right: Signal in absence of transverse relaxation, right: real FID (free induction decay)
LECTURE COURSE: NMR SPECTROSCOPY
First Chapter: Physical Basis of the NMR Experiment Pg.19
reached their inital position aligned with the +/ - z-axis:
A mechanical equivalent is a spring oscillating in time. The oscillation occurs
periodically so that the displacement from the equilibrium position follows a
cosine time-dependence. Because of frictional energy loss the oscillation is
damped so that after some time the spring is not oscillating anymore:
The damping time-constant is called T2 or transverse relaxation time. It charac-
FIGURE 19. left: Trajectory of the magnetization, right: individual x,y,z component
FIGURE 20. Monitoring the position of a weight fixed to a spring depending on the time elapsed after release can be
described by an damped oscillation.
LECTURE COURSE: NMR SPECTROSCOPY
First Chapter: Physical Basis of the NMR Experiment Pg.20
terizes the time it takes so that the signal has decayed to 1/ e of its original
magnitudeThe transverse relaxation constant T
2
is related to the linewidth of
the signals. The width of the signal at half height is given by:
Fast decay leads to broad signals, slow decay to sharper lines:
The transverse relaxation constant T
2
of spin I=1/ 2 nuclei is mainly governed
by
- the homogeneity of the magnetic field ( the "shim")
- the strength of the dipolar interaction with other I=1/ 2 nuclei, depending
on the number and the distance of neighbouring nuclei
- the overall tumbling time of the molecule which is related to its size.
1.9 The intensity of the NMR signal:
If the α and β states would be populated equally, no netto change in energy
could be observed. The signal intensity is proportional to the population differ-
ence of the two states.
The relative population of the states can be calculated from the Boltzmann dis-
tribution:
with T being the measuring temperature and k the Boltzmann constant. E
β
-E
α
FIGURE 21. Slowly decaying FIDs lead to narrow lines (left), rapidly decaying ones to broad lines (right).
∆ν
1 2 ⁄
1 πT
2
( ) ⁄ =
N
α
N
β
= e
(E
β
−E
α
)
kT
LECTURE COURSE: NMR SPECTROSCOPY
First Chapter: Physical Basis of the NMR Experiment Pg.21
is the energy difference between the α- and the β-state.
Unfortunately, the energy difference in NMR experiments is very small, much
smaller than in IR or UV spectroscopy, and therefore the signal is much
weaker. In other words, the required quantities of sample are much larger. The
energy difference ∆E depends on the gyromagnetic ratio γ:
Since γ of
1
H is approx. 10 times larger for
1
H than for
15
N N
α
/ N
β
is much
larger and the signal much more intense. Furthermore, the natural abundance
of
1
H is 300 times larger than for
15
N. Direct observation of
15
N nuclei requires
high concentrations and long measuring times. ∆E also depends on B
o
. Higher
fields lead to dramatically reduced measurement times.
To be more precise the signal that is induced in the receiver coil depends on
both the gyromagnetic ratio of the excited and detected spin:
Int prop γ
ex
* γ
det
3/ 2
nucleus I
N
γ S
rel
Nat. Abd.
[10
8
T
-1
s
-1
] [%]
1
H 1/2 2.675 1.00 99.98
13
C 1/2 0.673 1.76 10
-4
1.11
19
F 1/2 2.517 0.83 100
15
N 1/2 -0.2712 3.85 10
-6
0.37
31
P 1/2 1.083 0.0665 100
E = γ
h

B
o
LECTURE COURSE: NMR SPECTROSCOPY
Second Chapter: Practical Aspects Pg.22
1. THE COMPONENTS OF A NMR INSTRUMENT
The NMR instrument consists mainly of the following parts:
• the magnet
• probehead(s)
• radiofrequency sources
• amplifiers
• analog-digital converters (ADC's)
• the lock-system
• the shim system
• a computer system
1.1 The magnet system:
Usually the static magnetic field nowadays is provided by a superconducting (super-
con) magnet. Therein, the main coil that produces the field is placed in a liquid helium
bath so that the electric resistance of the coil wire is zero. The helium dewar is sur-
rounded by a liquid nitrogen dewar to reduce loss of the expensive helium:
FIGURE 1. Schematic drawing of the magnet, showing He and N2 dewars, coils and probehead
liq. N
2
dewar
liq. He
dewar
Main Coil
Probehead
room-temperature
shim tube
LECTURE COURSE: NMR SPECTROSCOPY
Second Chapter: Practical Aspects Pg.23
Additional so-called cryo-coils are placed in the He-bath to correct partially for field in
homogeneity. The magnet is vertically intersected by the room-temperature shim tube.
On its surface the r.t. shim coils are located. These are the ones that have to be adjusted
by the user. The sample that is mostly contained in a deuterated solvent inside a 5mm
glastube is placed inside a spinner and then lowered through the r.t. shim tube so that it
enters the probehead from the top.
1.2 The probehead:
The probehead contains the receiver/transmitter coil (actually only a single coil for
both purposes):
However, most probes contain two coils: An inner coil tuned to deuterium (lock) and a
second frequency and an outer coil tuned to a third and possibly a fourth frequency.
The deuterium channel is placed on most probes on the inner coil. The inner coil is
more sensitive (higher S/N) and gives shorter pulselengths. An inverse carbon probe
has the inner coil tuned to
2
H and
1
H and the outer coil to
13
C. It has high proton sensi-
FIGURE 2. View of the spinner with sample tube placed in probehead
˜
˜
˜
˜
Spinner
Resonance
Circuit
Cables to Preamp
Transmitter/
Receiver Coil
LECTURE COURSE: NMR SPECTROSCOPY
Second Chapter: Practical Aspects Pg.24
tivity and is well-suited for inverse detection experiments like HSQC or HMBC. A car-
bon dual probe has the inner coil tuned to
2
H and
13
C and the outer to
1
H and is
dedicated for carbon experiments with proton decoupling. The resonance circuit inside
the probe also contains the capacitors that have to be tuned when changing the sample
(especially when the solvent is changed). The receiver coil is in the center of the mag-
netic field. Once the spinner is lowered the NMR tube is positioned such that the liquid
inside is covered by the receiver coil completely. The receiver/transmitter coil should
not be confused with the cryo-coils (coils placed in the He bath) that produce the static
field. The probehead is then connected to the preamplifier which is usually placed close
to the magnet and which performs a first amplification step of the signal. The preampli-
fier also contains a wobbling unit required for tuning and matching the probe:
The radiofrequency sources (frequency synthesizers) are electronic components that
produce sine/cosine waves at the appropriate frequencies. Part of them are often modu-
laters and phase shifters that change the shape and the phase of the signals. The fre-
quency synthesizers nowadays are completely digital.Frequency resolution is usually
better than 0.1 Hz.
The amplifiers are low-noise audio-amplifiers which boost the outgoing and incoming
signals. They are in the range of 50-100 Watts for protons and 250-500 Watts for heter-
onuclei.
The analog-digital converters (ADC's) are required because the signal is recorded
FIGURE 3. Magnet and preamplifier system
Preamp
Probehead
liq. N
2
Inlet
liq. He
System
LECTURE COURSE: NMR SPECTROSCOPY
Second Chapter: Practical Aspects Pg.25
in analog form (superposition of various damped harmonic oscillations) but
must be in digital form in order to be accessible to Fourier transformation by
the computer. In modern nmr spectrometers 16 or 18 bit digitizers are used.
This means that the most intensive signal can be digitized as 2
18
. This has
severe consequences for the dynamic range because it implies that signals with
less than 1/ 2
18
of the signal amplitude cannot be distinguished in intensity.
Therefore, the receiver gain (the amplification of the signal) should be adjusted
such that the most intense signal almost completely fills the amplifier. However,
some care has to be paid in experiments that utilize water suppression: Sometimes the
most intense signal in a 2D experiment does not occur in the first increment because
the water may be (due to radiation damping) stronger in later increments. It is advis-
able to set the evolution time to longer values (e.g. 100ms) and observe the intensity of
the water signal.
The computer system is an industry-standard UNIX machine with lots of RAM. How-
ever, off-side processing on PCs is also possible and the PC is also started being used
as host computers on the spectrometer (unfortunately).
1.3 The shim system:
Considering that the precession frequencies are proportional to the magnetic field
strength the magnetic field has to be highly homogenous across the sample volume in
order to be able to observe small frequency differences (small couplings). If the field
would not be highly homogenous, the effective field strengths in different volume com-
partments inside the sample would be different and the spins therefore would precess at
different rates. This would lead to considerable line-broadening (inhomogeneous
broadening). The shimsystem is a device that corrects for locally slightly different
magnetic fields.
The shimsystem consists of two parts: (A) the cryo-shimsystem and (B) the room-tem-
perature shims. The basic principle behind them is the same. Small coils are supplied
with regulated currents. These currents produce small additional magnetic fields which
are used to correct the inhomogeneous field created by the main coil. There are a num-
ber of such coils of varying geometry producing correction fields in different orienta-
tions. In the cryo-shim system the coils are placed in the He bath, they are usually only
adjusted by engineers during the initial setup of the instrument. The room-temperature
shim system is regulated by the user whenever a new sample is placed in the magnet or
when the temperature is changed.
The room temperature shim system is grouped into two sets of shims
• the on-axis (spinning) shims (z,z
2
,z
3
,z
4
..)
• the off-axis (non-spinning) shims (x,y,xy...)
LECTURE COURSE: NMR SPECTROSCOPY
Second Chapter: Practical Aspects Pg.26
The on-axis shims only correct for inhomogeneity along the z-axis. They are
highly dependent on the solvent and the solvent filling height. At least the
lower order gradients (z, z
2
and z
3
) should always be adjusted. The z
4
gradient
depends very much on the filling height and its adjustment is tedious. There-
fore, in order to speed up the shimming process, the filling height should (if
possible) always be the same (e.g. 500 or 550 µl) and a shimset for that height
and probehead should be recalled from disk. The off-axis shims usually do not
have to be adjusted extensively (only x, y, xz and yz routineously). Wrong off-
axis shims lead to spinning side-bands when the sample is rotated during mea-
surement. Their contribution to the lineshape is largely removed with spinning
but this unfortunately introduces disturbances. It should therefore be avoided
during 2D and NOE measurements.
The name of the on-axis shims is derived from the order of the polynomial that needs to
be used to correct for the field gradient along the z-axis:
The z-shim delivers an additional field that linearly varies along the sample
tube. The z
2
shim has its largest corrections to the field at the top and the bot-
tom of the sample.

Shimming is usually performed by either observing the intensity of the lock

FIGURE 4. Field dependence of on-axis shims
Bo
z
z2 z3
z4
For the more experienced spectroscopist the misadjusted on-axis shim can mostly be recognized from
the signal lineshape. Misadjusted shims with even exponentials (z
2
,z
4
,z
6
) give asymmetric signals,
those with odd exponentials (z
1
,z
3
,z
5
) show up as a symmetrical broadening. This is due to the symme-
try of the function needed to correct of it. Z
4
for example increses the field strength at the the top and
the bottom of the sample and hence gives only frequencies larger than the correct frequency. Z
3
in con-
trast increases the freuqnecy at the top and decreases the frequency at the bottom of the sample. There-
fore, in the case of z4, there is a proportion of singal shifted to higher frequencies and hence to one side
of the signal, whereas z
3
give proportions of the signals shift to lower and higher frequencies resulting
in asymmetric and symmetric errors for the former and latter, respectively.

The closer the bump is to
the base of the signal the higher the gradients needs to be to correct for it.
LECTURE COURSE: NMR SPECTROSCOPY
Second Chapter: Practical Aspects Pg.27
signal (vide infra) or by monitoring the shape of the FID.:
Another way of controlling the homogeneity of the magnetic field is to watch the shape
of the FID. When the field is highly homogenous, the FID should fall smoothly follow-
ing an exponential. The resolution of the signal determines how long the FID lasts:
FIGURE 5. Misadjusted shims and appearance of corresponding signals after FT.
FIGURE 6. FID of perfectly shimmed magnet (left) and mis-shimmed magnet (right).
LECTURE COURSE: NMR SPECTROSCOPY
Second Chapter: Practical Aspects Pg.28
1.4 The lock-system:
Stability of the magnetic field is achieved by the deuterium lock system. The deuterium
lock measures the frequency of the deuterium line of the solvent. Hence, deuterated
solvents have to be used for FT-NMR. The system has a feedback loop, which gener-
ates corrections to the magnetic field strength B
o
, such that the resonance frequency of
the solvent deuterium line remains constant. This is achieved by delivering a suitable
current to the z
0
shim coil. Consequently, all other resonance frequencies are also kept
constant. Usually the lock system has to be activated when the sample has been placed
in the magnet. When the lock-system is not activated the naturally occurring drift of the
magnetic field leads to varying resonance frequencies over time and hence to line-
broadening.
The stability of the lock system is critical for many experiments, mostly 2D measure-
ments and even more importantly, NOE measurements. The stability is influenced by
many factors of which the temperature instability has the largest influence. To provide
good sensitivity of the lock the lock power should be adjusted just below saturation
(lock-line must still be stable!).
Modern digital lock system allow to adjust the regulation parameters of the lock chan-
nel.Thereby, one can determine how fast the lock circuit reacts (the damping of the
lock). For experiments utilizing pulsed-filed gradients the lock should be highly
damped in order to avoid that the lock tries to correct each time the field recovers from
the gradient!
1.5 The transmitter/receiver system:
It is much more convenient to handle audio-frequencies than handling radiofrequen-
cies. We have seen before that the B
1
field rotates about the axis of the static field with
a certain frequency, the carrier frequency, that coincides with the center frequency of
the recorded spectrum. Similarly, the received signal is also transformed down to audio
frequency. In addition we require quadrature detection: A single coil cannot distin-
guish positive and negative frequencies, that means distinguish frequencies of spins
rotating slower than the carrier frequency from those that precess at higher rates:
FIGURE 7. Top: Signal due to negative frequency. Bottom: Signal due to positive frequency,
0 +ν - ν
a) single detector
0 +ν - ν
LECTURE COURSE: NMR SPECTROSCOPY
Second Chapter: Practical Aspects Pg.29
In principle, such a separation could be achieved by using two receiver coils which dif-
fer by 90° in phase (a quadrature detector):
One could would then detect the cosine- modulated and the other the sine-modulated
component of the signal. Adding sine- and cosine modulated components of the signal
cancels the “wrong” frequency component:
However, probeheads contain only one coil. Sine-and cosine-modulated components of
the signal result from a different trick: The signal that comes from the receiver coil
(which of course is HF (MHz)) is split into two. Both parts are mixed with the transmit-
ter (carrier) frequency [for Bruker machines: SFO1], the frequency with which the B
1
field rotates. However, the phase of the transmitter frequency that is added differs by 90
degrees for the two parts. Thereby, the radiofrequencies (MHz range) are transformed
into audiofrequencies (kHz range). These can be handled in the following electronics
much easier. We do see now, that both the transmitter and the receiver system effec-
tively work in the rotating frame. The rotating frame was introduced in the transmitter
system by having the B
1
field rotating in the x,y plane and in the receiver system by
subtracting the transmitter frequency from the signal. What we actually measure are
therefore not MHz-frequencies but frequency-offsets (differences to) the carrier fre-
quency. In addition, we have introduced quadrature detection:
Transmitting and receiving is done on the same coil. The signal coming from
FIGURE 8. Sign discrimination from quad. detection
FIGURE 9. Fourier transform of a sin (top) and cosine wave (bottom).
b) quadrature detector
0 +ν - ν
0 +ν
- ν
sin ωt
cos ωt
Σ
FT
FT
LECTURE COURSE: NMR SPECTROSCOPY
Second Chapter: Practical Aspects Pg.30
the coil is blanked for a short time after the pulses (the so-called pre-scan
delay) and then used for detection. The transmitter/ receiver system contains
mainly analog parts.
When cosine and sine-modulated signals are slightly differently amplified so-called
quadrature images remain. They are usually observed for intense signals when few
scans are recorded and can be easily recognized because they are mirrored about the
FIGURE 10. Scheme of the RF path for a 300 MHz NMR spectrometer (proton detection).
Splitter
90° pase-shifter
sin ωt
cos ωt
Mixer
SFO1
(300.13 MHz)
Amplifier
FT
+
HF
(MHz)
Audio
( 0-KHz)
Analog-Digital Converter
ADC
LECTURE COURSE: NMR SPECTROSCOPY
Second Chapter: Practical Aspects Pg.31
zero-frequency (the middle of the spectrum). Therefore, modern instruments utilize
“oversampling”. A much larger spectral width is sampled, such that the quadrature
images do not fall into the observed spectrum any longer. Prior to processing the non-
interesting part of the spectrum is removed.
2. BASIC DATA ACQUISITION PARAMETER
The following paragraph summarizes the parameters that govern the acquisition of 1D
spectra and hence have to be properly adjusted before the measurement.
The 1D spectrum is characterized by the frequency in the center of the spectrum and by
its width. Remember that the B
1
field rotates about the axis of the static field with a cer-
tain frequency:
Exactly this frequency is mixed with the signal that comes from the receiver coil and
therefore is effectively subtracted from the signal frequency. Hence, the signal is mea-
sured in the rotating frame and the frequencies will be audio frequencies (0- kHz). If
the precession frequency of a particular spin is exactly the same as the frequency with
which the B
1
field rotates it will have zero frequency and appear in the center of the
spectrum. The frequency of the rotating B
1
field is called the (transmitter) carrier fre-
quency:
sfo1: spectrometer frequency offset of the first (observe) channel
this parameter determines the carrier offset. Frequencies larger than sfo1 will be on the
left side of the spectrum, smaller frequencies on the right side. sfo1 is the absolute fre-
quency (in MHz). If you want to make a small change of the carrier position, you can
change the offset o1
FIGURE 11.
FIGURE 12. Basic parameter for specifying the acquired spectral region
ω
0
ω
B
o
ω
1
ω
B
o
B
1
ω
0
x
y
spectral width (sw)
transmitter frequency
(sfo1)
0 - sw/ 2 + sw/ 2
LECTURE COURSE: NMR SPECTROSCOPY
Second Chapter: Practical Aspects Pg.32
sfo1 = bf1 + o1
bf1 is the so-called basic-spectrometer frequency, e.g. 500.13 MHz and o1 is the offset,
a frequency in the audio (0-> KHz) range.
sfo2: spectrometer frequency offset of the second (decoupler) channel
like sfo1, required for example for acquisition of proton decoupled carbon spectra. The
proton frequency is then defined on the second channel and should correspond to the
center of the proton spectrum.
Now, the next question is, how to adjust the spectral width (the width of the spectrum
in Hz). This done by proper choice of the dwell time. The signal is sampled stroboscop-
ically and neighboring data points are separated by the dwell time. The Nyquist theo-
rem says that at least one point per period must be sampled in order to characterize the
frequency correctly. Since the highest frequency is sw (in Hz), the dwell time must be
dw = 1/sw
Signals that have a higher frequency have made more than a 360 degree rotation
between the sampling points. On older instruments (AMX spectrometers) they are
attenuated by the audio-filters. They are recognized from the fact that they cannot be
phased properly, usually. On the modern instruments (those with oversampling, DRX
series), signals outside the spectral width completely disappear. Therefore, it is always
recommended to record the spectrum over a very large spectral width initially to make
sure that no signals at unusual places (e.g. OH protons at 20 ppm or signals below 0
ppm) are lost.
FIGURE 13. Left: Sampled data points. Right: Black: Sampled data points. Red: Missing sampling point for a
frequency of twice the nyquist value..
AQ
DW
(td =16)
LECTURE COURSE: NMR SPECTROSCOPY
Second Chapter: Practical Aspects Pg.33
sw: spectral width
gives the width of the acquired spectrum (on Bruker instruments, sw is in units of ppm,
swh in units of Hz).
dw: dwell time
is the time spacing between sampling of two consecutive data points.
dw = 1/sw or dw = 1/2sw
The dwell time is determined by the inverse of the spectral width (or the inverse of
twice the spectral width, depending on the quadrature detection mode).
td: time domain data points
The number of points that are sampled is called "time domain" data points (td). The
longer the FID is sampled the better will be the resolution in the spectrum provided
there is still signal in the FID.
aq: acquisition time
determines the total time during which a single FID is sampled
aq = td * dw
for 1D spectra, aq is set such that the signals have completely decayed towards the end
of the FID (which corresponds to the transverse relaxation time T2). If aq is set to a
shorter value, the resolution is lower, if aq is >> T2, only noise will be sampled at the
end of the FID, and therefore the experimental time is unnecessarily prolonged.
The complete measuring time for a simple 1D spectrum is approx.
t
tot
= ns (RD+aq)
in which ns is the number of scans and RD the relaxation delay (vide infra).
ns: number of scans
the number of FIDs which are co-added. The signal to noise ratio of a measurement
increases as
which means that in order to improve the S/N by a factor of two the measurement time
must be increased by a factor of 4. Sometimes, the minimum number of ns is deter-
mined by the phase-cycle of an experiment.
RD: relaxation delay
time between end of sampling of the FID and start of the next experiment. On Bruker
instruments, the relaxation delay is characterized by the parameter d1. The effective
time for relaxation is given by the repetition rate
S
N
∝ ns
LECTURE COURSE: NMR SPECTROSCOPY
Second Chapter: Practical Aspects Pg.34
t
r
= aq + d1
rg: receiver gain
This is the amplification of the signal. Settings are possible in powers of 2 (e.g.
1,..,128,256,...32k). For automatic adjustment of the receiver gain on spectrometers use
rga. The receiver gain has to be set such that the maximum intensity of the FID fills the
ADC (analog-digital converter). If the receiver setting is too low, the dynamic range of
the instrument is not exploited fully and very small signals may be lost. If the receiver
gain setting is too high, the first points of the FID are clipped, which will lead to severe
baseline distortions.
p1,p2,..length of pulses [in µs]
length of pulses in µs. This is the duration that
the B
1
field is switched on. The B
1
field rotates
about the z-axis with the frequency ω
o
. We
have seen before that if the frequency ω with
which the spin precesses about the z-axis is
identical to ω
o
it does not feel B
0
in the rotat-
ing frame.It will then precess about the axis of
the effective field which in that case corre-
sponds to the axis of the B
1
field. However, the
precession frequency about the B
1
axis, ω
1
, is much smaller, it is in the kHz
range (or smaller). The strength of the B
1
field is correlated to the time required
for a 360 degree rotation PW
360
via
ω
1
=

γB
1
/ 2π = 1/ (PW
360
)
Usually either 90 or 180 degree rotations are required in NMR. The following conven-
tions are made in pulseprograms:
• p190˚ transmitter pulse length
• p2180˚ transmitter pulse length
• p390˚ decoupler pulse length
• p4180˚ decoupler pulse length
FIGURE 14. Definition of the recycle delay.
AQ D1
tr
ω
o=SFO1
ω
B
o
ω
1=(4*(PW90)
)
-1
LECTURE COURSE: NMR SPECTROSCOPY
Second Chapter: Practical Aspects Pg.35
The flip angle of the pulse Φ is determined not only by the length of the pulse
τ
p
, but also by the power level, at which the B
1
field is applied:
Φ = τ
p
γB
1
For proton pulses, the power level is given by the parameters hl1,hl2,hl3,..hl6 (hl=
1
H
level). For pulses on the heteronuclei (
13
C,
15
N,
31
P ...), power setting parameters are
tl0,tl1,..tl6 (transmitter level 1,2..) or dl0,dl1..dl6 (decoupler
level 1,2..) for the low power mode. In the default mode, heteronuclear pulsing is done
in the high-power mode and cannot be regulated (always full power). On the newer
DRX instruments the power levels are specified as pl1:f1 (power level 1 on channel 1).
LECTURE COURSE: NMR SPECTROSCOPY
Third Chapter: Practical Aspects II Pg.36
1. ACQUISITION OF 1D SPECTRA
Acquisition of simple 1D spectra comprises the following steps
• changing the probehead
• Setting the correct temperature for measurement
• Correct positioning of the tube in the spinner and insertion of the sample into
the magnet
• recalling a shimset with approximately correct shims for the solvent and
probehead
• activation of the field/frequency lock system
• adjustment of the homogeneity of the magnetic field (shimming)
• recalling a parameter set for the desired experiment
• (tuning of the probehead)
• (calibration of the pulse lengths)
• determination of the correct receiver gain setting
• performing a preliminary scan with large spectral width (
1
H only, approx. 20
ppm)
• acquisition of the final spectrum with sufficient S/N and optimized spectral
width
1.1 Calibration of pulse lengths:
The flip-angle θ of pulses is proportional to the duration (τ
p
) and strength of
the applied B
1
field:
θ = γB
1
τ
p
It is also obvious that for nuclei with lower γ, higher power setting must be
applied (typically for
1
H: 50 W, for
15
N:300W). The length of the pulses has
therefore to be determined for a given power setting. For calibration of proton
pulses, a spectrum is acquired with setting the length of the pulse correspond-
ing to a small flip angle, phasing of the spectrum, and then increasing the
pulse-length in small steps. When the length of the pulse is set corresponding
to a 180˚ pulse, a zero-crossing of the signal is observed, as well as for the 360˚
pulse. The length of the 90˚ pulse can be calculated to be half of the length of
LECTURE COURSE: NMR SPECTROSCOPY
Third Chapter: Practical Aspects II Pg.37
the 180˚ pulse:
13
C pulses are most easily determined on a
13
C-labeled sample such as an ace-
tate sample (labeled at the Me carbon). Calibration is performed in the so-
called inverse-detection mode with the following sequence detecting the pro-
ton signal (which is split by the
13
C coupling into an anti-phase doublet):
When the carbon pulse is exactly set to 90˚, all magnetization is converted into
multiple-quantum coherences, and no signal is observed:
FIGURE 1. Calibration of pulse length. The length of the proton pulse is incremented by a fixed amount for each
new spectrum.
FIGURE 2. Pulse sequence to determine the 90° carbon pulse with proton detection
FIGURE 3. Resulting spectra from the sequence of Fig.2.
1
H
13
C
1/2J(C,H)
1us
5us
10 us (90 deg.)
15us
J(C,H)
LECTURE COURSE: NMR SPECTROSCOPY
Third Chapter: Practical Aspects II Pg.38
1.2 Tuning the probehead:
The purpose of the radiofrequency circuit inside the probe is to deliver a rotat-
ing B
1
field and to detect the signal. An oscillating electromagnetic field is also
part of a radio and hence the resonance circuit inside the probe has much in
common with the one found in a radio:
A resonance circuit has two basic components: a capacitor (C) and a coil (or
inductance, L). The energy is interchangingly stored in form of an electric or
magnetic field in the capacitor or in the coil, respectively. The frequency of
oscillation is
in which L is the inductance of the coil and C the capacity.
In order to get best sensitivity and the shortest pulselengths the probe has to be
• tuned to the transmitter frequency
• the impedance should be matched to 50 Ω.
When properly tuned and matched, the probe has optimum sensitivity and the
13
C pulse lengths for example do not have to be measured on the sample but
pre-determined values can be used instead. A large influence to the tuning and
matching is caused by the dielectric constant of the sample. The reason for this
is, that if the sample is introduced into the inner of the coil the dielectric con-
stant in that part and hence the impedance of the coil changes. Care has be
taken when solvents with high salt contents are used: Even in the case of per-
fect matching and tuning the pulselengths can be considerably longer (about
1.5 times for protons when using 150mM NaCl), although this effect largely
depends on the nucleus and is most pronounced for proton frequencies. Tun-
ing and matching can be performed in different ways: (A) the reflected power
FIGURE 4. Basic principle of the probehead circuit.
L
C
E
B
ω 1 LC ( ) ⁄ =
LECTURE COURSE: NMR SPECTROSCOPY
Third Chapter: Practical Aspects II Pg.39
of the probe during pulsing can be minimized. (B) Nowadays wobbling is used
during which the frequency is swept continuously through resonance covering
a bandwidth of 4-20 MHz:
Modern probes usually have two coils, an inner coil and a outer coil, and the
inner one has higher sensitivity. An inverse probe, which is optimized for
1
H
detection has
1
H frequency on the inner and
13
C frequency on the outer coil.
The dual probe has higher sensitivity for
13
C, and consequently, the inner coil
is used for 13C:
Recently, so-called cryo-probes have been introduced. For these probes the RF-
coil and the preamplifier is at He-temperature. Thereby, the thermal noise level
is largely reduced (the amount of signal is even a little less than for a conven-
tional probe) and the signal/ noise in the absence of salt increased by almost a
factor of four.
1.3 Adjusting the bandwidth of the recorded spectrum:
The bandwidth of the spectrum is determined by the dwell time (dw), the time
spacing between recording of two consecutive data points (vide supra).
FIGURE 5. Wobbling curve of a detuned probe (thick line). By tuning, the minimum is moved along the horizontal
axis and by matching the minimum becomes deeper. The optimum setting is shown as a dotted line.
FIGURE 6. Arrangement of coils for inverse and direct carbon detection probeheads
SFO1
tuning
m
a
t
c
h
i
n
g
4
9
0
5
1
0
≈ ≈
Inverse
Dual
1
H
1
H
13
C
13
C
LECTURE COURSE: NMR SPECTROSCOPY
Third Chapter: Practical Aspects II Pg.40
If the sampling rate is too low, the sig-
nal will still be sampled but will have a
wrong frequency after Fourier transfor-
mation. Although analog or digital fil-
ter decrease the intensity of folded
peaks, they may well be in the spec-
trum. On the other hand, signals may
easily become lost, if the spectral width
is set too small. The best way to prevent folding or loosing of signals is to
record a preliminary experiment with a very large bandwidth (e.g. 30 ppm for
1
H) and then adjusting offset and spectral width to cover all signals. Usually
10% are added to the edges because the audio filters tend to decrease signal
intensity of signals close to the edge. Folded peaks can be recognized, because
usually they are not in-phase after adjustment of zero and first order phase cor-
rection. Alternatively, they change their position in the spectrum, when the off-
set is varied slightly.
However, care has to be taken on the newer instruments that use oversampling and dig-
ital filters. In this case the frequencies outside the sampled region will be almost com-
pletely removed by the digital filters!
1.4 Data processing:
Once the analog signal that comes from the coil has passed the amplifiers, it is
converted into a number by the analog-to-digital converter (ADC). The result-
ing numbers which represent signal intensity vs. time [f(t)] are then converted
into a spectrum that represents signal intensity vs. frequency [f(ω)] by use of
the Fourier Transformation.
The Fourier theorem states that every periodic function may be decomposed
into a series of sine- and cosine functions of different frequencies:
The Fourier decomposition therefore tells us which frequencies are present to
FIGURE 7. Effect of folding (aliasing) of signals.
f x ( ) a
0
2 ⁄ a
n
nx b
n
nx sin
n 1 =


+ cos
n 1 =


+ =
LECTURE COURSE: NMR SPECTROSCOPY
Third Chapter: Practical Aspects II Pg.41
which amount (with which intensity). Using the integral form of the equation
above
and utilizing the Euler relation the equation can be re-written as:
This is the recipe to transform the signal function F(t) which for a single reso-
nance is
into the spectrum F(ω). Analogously, the FT can be used to transform from the
frequency- into the time-domain:
Note that this transformation is the continuous FT (used for continuous func-
tions). Usually, the integral is split up again into the cosine- and sine terms cor-
responding to the cosine and sine transforms, so that
Note that in FT-NMR the signal is sampled as discrete points. Hence, the dis-
crete FT has to be utilized, which transforms a N-point time series consisting of
values d
k
into a N-point spectrum f:
The discrete FT is implemented in form of the very fast Cooley-Tukey algo-
rithm. The consequence of using this algorithm is, that the number of points the spec-
trum has must be a power of 2 (2
n
).
f ω ( ) 1 2π ( ) ⁄ a t ( ) ωt ( ) b t ( ) ωt ( ) sin + cos t
a t ( )
d
∞ –


1 2π ( ) ⁄ f x ( ) tx ( ) cos x
b t ( )
d
∞ –


1 2π ( ) ⁄ f x ( ) tx ( ) sin x d
∞ –


=
=
=
f ω ( ) 1 2π F t ( )e
iωt –
t d
∞ –


⁄ =
F t ( ) e
iωt –
e
t T2 ⁄ –
• =
F t ( ) 1 2π ( ) ⁄ f ω ( )e
iωt –
ω d
∞ –


=
f t ( )e
iωt
t d
∞ –


Re f ω ( ) [ ] Im f ω ( ) [ ] +
f t ( ) ωt cos t i f t ( ) ωt sin t d
∞ –


+ d
∞ –


=
=
f
n
1 N ( ) ⁄ d
k
e
2πikn N ⁄ –
k 0 =
N 1 –

=
LECTURE COURSE: NMR SPECTROSCOPY
Third Chapter: Practical Aspects II Pg.42
The next figure will summarize the FT of some important functions (the so-
called Fourier pairs):
The FT of a cosine-wave gives two delta-functions at the appropriate frequency
(A). The FT of a decaying exponential gives a lorentzian function with a char-
acteristic shape (B). The FT of a properly shimmed sample containing a single
frequency gives two signals at the appropriate frequency with lorentzian line-
shape (C). In fact the FT of (C) can be thought of a convolution of (A) and (B).
The FT of a step function gives a sinc function
The sinc function has characteristic wiggles outside the central frequency band
(D). A FID that has not decayed properly can be thought of as a convolution of
a step function with an exponential which is again convoluted with a cosine
function. The FT gives a signal at the appropriate frequency but containing the
wiggles arising from the sinc function (E). A gaussian function yields a gauss-
ian function after FT. Signals that have not decayed to zero are common in 2D
FIGURE 8. Results of different functions after Fourier transformation in frequency space.
FT
A
B
C
D
E
F
c x ( ) sin x ( ) sin x ⁄ =
LECTURE COURSE: NMR SPECTROSCOPY
Third Chapter: Practical Aspects II Pg.43
NMR were the number of data points sampled is restricted. In these cases suit-
able window functions are used to force the signal to become zero towards the
end of the FID.
1.5 Phase Correction
We have seen that the complex Fourier transform can be decomposed into a
cosine transform and a sine transform that yield the real and imaginary parts
of the signals, respectively. In practice, real and imaginary parts of the signal
are stored in separate memory locations. However, the real part that is used for
displaying the spectrum does not necessarily need to be purely absorptive:
Purely absorptive signals have a much narrower base, so that differentiation of
peaks very close to each other is easier if they have been phased to yield purely
absorptive line shape. Therefore, a phase-correction φ is needed to yield purely
absorptive signals. It will do the following manipulations:
with Re(∆φ=0) and Re(∆φ) being the real part of each data point before and
after the phase correction, respectively.
The phase of the signals after Fourier Transformation depends on the first
point of the FID. If the oscillation of the signal of interest is purely cosine-mod-
ulated, the signal will have pure absorptive line shape. If the signal starts as a
pure sine-modulated oscillation, the line shape will be purely dispersive:
FIGURE 9. Signal in pure absorption or dispersion mode
1/ πT
2
absorption
mode
dispersion
mode
Re ∆Φ ( ) Im ∆Φ 0 = ( ) φ Re ∆Φ 0 = ( ) + Φ
Im ∆Φ ( ) Re ∆Φ 0 = ( ) φ Im ∆Φ 0 = ( ) + Φ cos sin =
cos sin – =
LECTURE COURSE: NMR SPECTROSCOPY
Third Chapter: Practical Aspects II Pg.44
There are two different types of phase-correction. The zero-order phase correction
applies the phase change to all signals in the same way. The first order phase cor-
rection applies a phase change, whose amount increases linearly with the dis-
tance to the reference signal (marked with an arrow in the figure below):
What is the origin of the varying phase in the spectra? The zero-order arises
because the absolute phase of the signals at the detector depends on the cable
lengths etc. The linear dependence of the phase of the signals has a more com-
plicated reason. In a theoretical 1D experiment, acquisition of the FID would
start immediately after application of the pulse. However, in a real experiment
there is a protection delay (called de on Bruker instruments), to wait for the
pulse ring-down (pulsing and detection of the signal is done on the same coil,
so that there must be a protection delay after the pulse):
FIGURE 10. The relative phase of the magnetization with respect to the receiver coil determines the phase of the
signal after Fourier transformation
FIGURE 11. Top: The zero order phase correction changes the signal phase for all signals by the same amount.
Lower: For the first order phase correction the applied correction depends on the frequency difference to the
reference signal (marked by an arrow).
FIGURE 12. A) Ideal FID. B) Introduction of the pre-scan delay to enable pulse power ring-down.
t = 0
t = 0
PC
"0
th
order"
PC
"1
st
order"
DE
A
B
LECTURE COURSE: NMR SPECTROSCOPY
Third Chapter: Practical Aspects II Pg.45
During the protection delay de, the spins start to precess. The precession fre-
quency depends on the offset of the signal frequency, e.g. the distance of the
signal from the middle of the spectrum. The first-order phase correction
reverses the phase change due to shift evolution during de and is therefore lin-
early dependent on the frequency of the signal:
To adjust the phase, go into the phase correction mode, define a signal at one
end of the spectrum as the reference phase, use the zero-order phase correction
to phase it to absorption and then use the first order phase-correction to phase
the signal at the other edge of the spectrum. All other but folded signals will then
be in phase.
When spectra cannot be phased a magnitude calculation or the power spectrum
(PS=M
2
) is used:
FIGURE 13. Precession of spins with different frequencies during the pre-scan delay.
FIGURE 14. (A) normal FT with phase correction.(B) Power spectrum. (C) Magnitude calculation.
A
B


B
LECTURE COURSE: NMR SPECTROSCOPY
Third Chapter: Practical Aspects II Pg.46

The magnitude calculation yields much broader peaks at the base. Both, mag-
nitude and power calculation lead to a severe loss in resolution.
1.6 Zero-filling and the resolution of the spectrum
The resolution that can be obtained from a spectrum is determined by two fac-
tors:
• the natural line width that is related to the transverse relaxation time
(homogenous broadening) and which is due to efficient dipolar coupling of the
spins. Fast transverse relaxation may also be caused by field inhomogeneity
(inhomogenous broadening).
• the number of points which are used to digitize the signal. If the number of
points after FT (on Bruker instruments the parameter SI) is smaller than the
number of acquired data points (on Bruker instruments the parameter TD), the
signal can not be digitized properly, and the resolution is very low:
The theoretical resolution obtainable from the FID can be calculated as
Res = SW (Hz) / TD
neglecting relaxation effects.
Provided that the FID has decayed to zero towards its end it is useful to
FIGURE 15. Left:Effect of increasing number of data points after FT. Right: Spectrum without zero-filling (lower
trace) and after zero filling with 5*TD (upper trace).
M Re
2
Im
2
+ =
LECTURE COURSE: NMR SPECTROSCOPY
Third Chapter: Practical Aspects II Pg.47
append zeros to the FID. Adding zeros once (that means making si = 2*td)
gives a significant improvement in resolution, adding more zeros gives only
cosmetic effects but does not add more information.
When the FID has not decayed to zero, adding zeros introduces a step function
that causes sinc-type artifacts (wiggles).
1.7 Resolution enhancement and S/N improvement
The resolution is determined by the transverse relaxation time T2 of the spins.
A long transverse relaxation time leads to a slowly decaying, fast relaxation to
a quickly decaying FID. Therefore, the resolution is determined by the amount
of signal which remains towards the end of the FID. Any data manipulation,
e.g. multiplying the FID with a increasing exponential (e
t/ x
) will improve the
resolution. Conversely, the S/ N is determined by the amount of signal at the
beginning of the FID. Most manipulations that improve resolution lead to a
loss in S/ N.
In
13
C nmr, S/ N is comparably bad, whereas resolution is rarely a problem.
Data processing of
13
C spectra therefore usually is performed with exponential
multiplication with a decaying exponential (em with LB>=1). In
1
H nmr, S/ N
is rarely a problem, but good resolution is required, and data could be multi-
plied with an increasing exponential (em with LB< 0).
Application of the window function amounts to multiplying the FID data
point d
k
by
d
k
’=d
k
*a
k
in which k runs from 0 to TD (the total number of data points).
There are number of so-called window functions that are aimed at either
improving resolution or S/ N and their effect on a spectrum is shown in the fig-
ure below:
FIGURE 16. Top: Resulting FT of a FID that did not decay to zero in comparison to a fast decaying FID (bottom)
LECTURE COURSE: NMR SPECTROSCOPY
Third Chapter: Practical Aspects II Pg.48
Important, frequently used window functions are
1.7.1 Exponential multiplication:
The line broadening constant lb can be positive (sensitivity enhancement) or
negative (resolution enhancement). A lorentzian line of width W will have a
width of W + LB Hz after apodization. It is mainly used for processing
13
C
data, for which sensitivity enhancement is desired but where resolution is
rarely a problem (use lb = 1-2 Hz).
1.7.2 Lorentz-to-Gauss transformation:
This a combination of exponential and gaussian multiplication.
The factor lb determines the broadening, whereas gb determines the center of
the maximum of the gaussian curve. When gb is set 0.33, the maximum of the
FIGURE 17. (A) raw spectrum after FT. (B)Multiplication with exponential,LB=5.(C) as (B), but LB=1. (D) sine-
bell.(E) 45 degree shifted sine-bell.(F)90 degree shifted sine-bell.
a
k
e
πlbk∆t –
=
a
k
e
πlbk∆t
e
gb k∆t ( )
2

• =
LECTURE COURSE: NMR SPECTROSCOPY
Third Chapter: Practical Aspects II Pg.49
function occurs after 1/ 3 of the acquisition time.
By this multiplication, the Lorentzian lineshape is converted into a gaussian
lineshape, which has a narrower base:
1.7.3 Sine-Bell apodization:
Sine-bell apodization is frequently used in 2D NMR processing. A pure sine-
bell corresponds to the first half-lobe of a sine-wave and multiplies the FID
such that it brought to zero towards the end. However, such a function also
sets the first data points to zero and hence leads to severe loss of S/ N and
introduces negative wiggles at the bases of the signals in addition to a strong
improvement in resolution. Shifting the sine-bell by 90 degrees (a cosine-bell)
means that the function used starts of the maximum of the first lobe and
extends to zero towards the end of the FID. This is usually used for FIDs that
have maximum signal in the first data points (NOESY, HSQC). A pure sine-bell
is used for such experiment in which the FID does not have maximum signal in
the first points (such as COSY) or for improving magnitude data (HMBC):
FIGURE 18. Left: Lorentzian lineshape. Right: Gaussian lineshape.
FIGURE 19. Left: FID of COSY with shifted sine-bell.Right: FID of NOESY with cosine-bell
LECTURE COURSE: NMR SPECTROSCOPY
Third Chapter: Practical Aspects II Pg.50
The influence of the parameters on the window functions is shown below:
An often encountered problem is truncation of the signal, which means, that
the signal is not sampled until it has completely decayed. This is the case,
when the data matrices, e.g. the number of data points, must be kept to a rea-
sonable low value, e.g. in 2D NMR, or when one very slowly decaying line is
present in the spectrum. Then the signal can be described by a superposition of
an oscillation, an exponential and a square function. The contribution from the
square function will introduce wiggles at the base of the signals which are orig-
inating from the sinc function. Such a problem can be circumvented if the FID
is multiplied with a function that decays to zero at the end of the FID, e.g. an
decaying exponential or a cosine bell function.
1.8 Baseline Correction
Baselines that are not flat are a major problem in FT-NMR. Firstly, spectra with
non-flat baselines give wrong integrals. Secondly, in spectra with baseline roll
small signals may not be recognized. Thirdly, those spectra are difficult to
phase. Furthermore, peak-picking routines need a threshold for minimal signal
intensity and such peak-picking for tiny signals is not possible when the base-
line is not flat. There are many reasons for bad baselines. In general, baseline
distortions are caused by distortions of the first points of the FID. A frequent
source is receiver overload, that means, that the receiver gain has been set too
high. The ADC (analog-to-digital converter) can only digitize a certain maxi-
mal signal intensity. On the Bruker instruments, that means that the FID must
fit into the acquisition window completely. If the signal intensity is larger, the
first points of the FID are clipped:
FIGURE 20. Different window functions. A: exponential multiplication with LB=1,3,5Hz. B) Lorentz-Gaussian
transformation with LB=-5 and GB =0.1, 0.3, 0.5 Hz. C) Sine-bell shifted by 0, π/2, π/4, π/8. D) Sine-bell squared
shifted by 0, π/2, π/4, π/8.
LECTURE COURSE: NMR SPECTROSCOPY
Third Chapter: Practical Aspects II Pg.51
Such a baseline cannot be corrected, and the measurement must be repeated
with a lower receiver gain setting. Other baseline problems, like baseline-drift
(non-horizontal but flat baseline) or baseline-curvature can be corrected, on
Bruker machines either automatically (with the command abs) or manually.
Oversampling has shown to reduce baseline problems in the directly sampled
frequency dimensions dramatically.
Frequently, one can recognize which data point is distorted from the shape of
the baseline. A wrong first data point leads to an offset, a wrong second one to
a half-wave, a wrong third one to a full wave, etc. In principle, spectra with (a
few) wrong first data points can still be used, if linear back-prediction of the first
data points is used.
1.9 Linear prediction:
For exponential decaying signals that are sampled at constant spacing (as is
usually the case for NMR) new data points can be predicted. The reason
behind this is that one can assume that new data points can be represented as a
fixed linear combination of immediately preceding values. LP provides a
means of fitting a time series to a number of decaying sinusoids. Provided that
S/ N is good the number of points can be doubled with LP (or the measuring
time can be halved to achieve the same resolution). Predicting more points
severely changes the lineshape of the signals and is not recommended. LP
gives very good results for COSY and HSQC data. Especially in the case of the
FIGURE 21. lower trace: spectrum after FT of an FID with correctly adjusted receiver gain. Top: Spectrum after FT
of a clipped FID.
LECTURE COURSE: NMR SPECTROSCOPY
Third Chapter: Practical Aspects II Pg.52
COSY, antiphase signals cancel when the resolution is low. Linear prediction in
these cases not only increases the resolution but also increases the amount of
signal!
With modern computing power it is performed rather quickly and the results
can be astonishing good. Remember that in order to double the resolution in
the indirect dimension the number of experiments in a 2D spectrum and hence
the acquisition time has to be doubled. Linear prediction may achieve the same
goal in a few seconds. In the case of constant-time experiments, mirror-image
linear prediction may be applied which is capable to predict N points to 4*N
points.
FIGURE 22. ct-HSQC spectra (A) 240 points.(B) 64 points.(C) LP to 128 points.(D) mirror -image LP to 240
points.
LECTURE COURSE: NMR SPECTROSCOPY
Fourth Chapter: Chemical shifts and scalar couplings Pg.53
1. THE CHEMICAL SHIFT:
Soon after the discovery of the phenomenon of nuclear magnetic resonance sci-
entists realized that more than a single line was observed for protons in a
organic molecule such as ethanol. In liquid (isotropic) phase, this splitting of
lines is caused by the chemical shift due to the Zeeman interaction and to sca-
lar spin,spin couplings.
As we have seen before, the resonance frequency depends on the strength of
the applied static field and on the gyromagnetic ratio of the nucleus:
ω = γB
However, the field strength to be considered is not exactly the strength of the
applied magnetic field in vacuo but is locally modified by the electronic envi-
ronment of the nucleus. What is really important is the effective field strength at
the nucleus site. Many different mechanisms are known that may influence the
exact strength of field at the nucleus:
σ = σ
dia
(local) + σ
para
(local) +σ
m
+ σ
rc
+ σ
ef
+ σ
solv
Herein is
• σ
dia
the diamagnetic contribution
• σ
para
the paramagnetic contribution
• σ
m
the neighbor anisotropy effect
• σ
rc
the ring-current contribution
• σ
ef
the electric field effect
• σ
solv
the solvent effect
1.1 The diamagnetic effect:
The nucleus is surrounded by an electron cloud. The static magnetic field B
o
causes the electrons to precess about the axis of the magnetic field. Thereby, a
current is created that itself builds up a magnetic field. The direction of the
induced field is opposed to the static field and acts to decrease the strength of
the latter:
LECTURE COURSE: NMR SPECTROSCOPY
Fourth Chapter: Chemical shifts and scalar couplings Pg.54
This effect is called the Lamb Shift. It can be calculated as
in which ρ(r) is the electron density, r the distance of the electron from the
nucleus, e the charge and m
e
the mass of the electron. One important statement
of this so-called Biot-Savart Law is that the electron density at larger distances
from the nucleus is of importance for the counter-acting field.
The diamagnetic shielding describes the behavior of spherically distributed
electrons such as electrons from the s-orbital of protons. It is therefore the dom-
inant term for proton shifts but less important for the heavier nuclei.
1.2 The paramagnetic term:
The paramagnetic term serves to correct for the disturbance of the spherical
rotation of electrons. This may be caused by the formation of bonds. Quantum-
mechanically speaking, the paramagnetic term may be calculated by finding
the way by which the electron wave functions are modified by the magnetic
field. Such a modification of the wave function takes place because properties
FIGURE 1.
B
o
σ
iso
µ
0
e
2
3m
e
⁄ rρ r ( )
0


• dr =
LECTURE COURSE: NMR SPECTROSCOPY
Fourth Chapter: Chemical shifts and scalar couplings Pg.55
of exited states (contributions from the LUMO, lowest unoccupied molecular
orbital) are mixed into ground state wave (esp. the HOMO, highest occupied
molecular orbital) functions through application of the static field. The electron
distribution in such an excited state wavefunction is very different from that
encountered in the ground state giving rise to a large change in the shielding:
The calculation of the diamagnetic shift is rather involved and requires the
exact knowledge of the excited wave functions. For
13
C it is given as
In this formula, ∆E is the energy difference between HOMO and LUMO , r the
radius of the 2p orbital and the Q describe electron densities and bond orders.
Very low-lying ground-state wavefunctions are usually paired with rather high
lying excited state wave functions such that the resulting energy separation is
comparably large. Since the paramagnetic shift is inversely proportional to the
energy gap, the shift is large when the gap is small. Reactivities of compounds
are often related to HOMO/ LUMO energy separations and chemical shifts
have therefore been successfully used to screen for reactive compounds.
The paramagnetic term requires non-spherical electron distribution (a non-
vanishing angular momentum) and can hence only be applied to nuclei that
have non-s orbital electrons. It is the dominant term for all nuclei other than
protons. The shift range due to the paramagnetic contribution is larger than for
the diamagnetic shift. This is obvious from the huge shift ranges (e.g. several
thousand ppm for
57
Fe compared to approx. 15 ppm for
1
H).
Substituents influence the chemical shift because they change the electron den-
FIGURE 2. Mixing of excited state wavefunction into ground-state wavefunctions through the Bo field.
HOMO
LUMO
B
o
σ
i
para
µ
0
µ
B
2
( ) 2π∆E r
3 –
〈 〉 ⁄ Q
i
Q
j
i j ≠

+ =
LECTURE COURSE: NMR SPECTROSCOPY
Fourth Chapter: Chemical shifts and scalar couplings Pg.56
sity at the proton nucleus via inductive effects. This is fairly evident from a
comparison of a oxygen and a carbon bound proton:
1.3 Chemical shift anisotropy:
The distribution of the electrons about the nucleus is usually non-spherically.
The magnitude of the shielding therefore depends on the relative orientation of
the nucleus with respect to the static field. For sp
3
carbons the nuclei are tetra-
hedrally coordinated and the electron distribution is almost invariant under
rotation. For sp
2
carbons such as aromatic or carbonyl nuclei the shielding
highly depends on the orientation of the bond relative to the static field:
The chemical shielding is described by the chemical shift tensor, which trans-
forms the static field into the effective field (see add. mat.) The zz axis is usu-
ally taken as the axis with the largest shielding. Due to the shielding the
direction of the effective field B
eff
may deviate from the direction of the static
FIGURE 3. Dependence of chemical shielding upon orientation of carbonyl bond toi the external field
FIGURE 4. Shielding of carbonyl carbon in dependence of orientation of zz-axis w.r. to external field
C
H
e- = 2.5 e- = 2.1
H
O
e- = 3.5
e- = 2.1
ca 1-2 ppm
ca 4 ppm
C
O
σ
zz
C
O
σ
zz
LECTURE COURSE: NMR SPECTROSCOPY
Fourth Chapter: Chemical shifts and scalar couplings Pg.57
field B
o
. Since the molecule rotates quickly in solution the observed chemical
shift is a average over the shifts coresponding to the different orientations (iso-
tropic chemical shift). However, when rotation is hindered, as is the case in the
solid state, the line is significantly broadened. In liquids this effect contributes
to relaxation, and is the major relaxation mechanism for non-protonated car-
bons. Chemical shift anisotropy values can be measured from solid-state NMR.
The value of the chemical shift for the isotropic case can be taken as 1/ 3 of the
trace
1.4 Magnetic anisotropy of neighboring bonds and ring current shifts:
Some types of neighboring bonds create an additional magnetic field which is
anisotropic in space. An example is a triple bond. The π electrons of the triple
bond form an electron cloud that extends around the bond axis in form of a
tube. The magnetic field forces the electrons to rotate about the bond axis creat-
ing a magnetic field whose direction is along the bond axis and which again
counteracts the static field. A similar counteracting field is formed in the π-
cloud of aromatic systems. Such anisotropies can dramatically change the
appearance of proton spectra. They usually increase the dispersion of proton
spectra. However, in order to give substantial effects the influenced protons
FIGURE 5. Left: Coordinate system used for the chemical shift tensor. The zz axis points along the value
of the largest shielding, xx and yy orthogonal to zz. Right: Direction of the static and the effective field.
σ
zz
σ
yy
σ
xx
B
o
B
korr
B
eff
σ
iso
1 3 σ
xx
σ
yy
+ σ
zz
+ ( ) ⁄ =
LECTURE COURSE: NMR SPECTROSCOPY
Fourth Chapter: Chemical shifts and scalar couplings Pg.58
must be sterically fixed in relative to the anisotropic group. This is the case for
folded proteins that do adopt a unique structure. Therefore, one can sometimes
judge from the signal dispersion of 1D proton spectra whether a protein is
folded or random coil.
The observed shifts can be either up-field or down-field, depending on the
exact postion of the proton. The following figure shows regions of increasing
(+) or decreasing (-) field:
These effects can be dramatically. Aliphatic Protons that are fixed in space
above the plane of an aromatic ring can be shifted to values below 0 ppm,
those in the plane to values higher than 10 ppm.
FIGURE 6. Fig:Left: Anisotropy from a benzene π system. Right: Anisotropy from a triple bond. The direction of
the induced electron flow is indicated below
FIGURE 7. Chemical shift anisotropies of various π-systems
e-
B
o
C
e-
B
o
C
C
C
C
C
-
-
+
+
-
-
C
C
+++
+
-
-
++
+
+
-
-
-
-
LECTURE COURSE: NMR SPECTROSCOPY
Fourth Chapter: Chemical shifts and scalar couplings Pg.59
The chemical shift anisotropy for a triple bond can be calculated as
where theta is the angle with respect to the bond axis, r the distance to the cen-
tre and χ the magnetic susceptibilities parallel and perpendicular to the bond
axis. As can be seen from the formula, the effect depends strongly on the dis-
tance and orientation.
1.5 Electric field gradients:
Strongly polar groups create intramolecular electric fields. This has the effect of
distorting electron density in the rest of the molecule and will hence influence
the chemical shifts.
1.6 Hydrogen bonds:
Hydrogen bonds decrease the electron density at the involved proton site and
hence leads to a high-frequency shift. The effect is especially pronounced for
symmetric hydrogen bonds (those in which the distance of the proton is equal
to both acceptors). Protons that are hydrogen bonded usually be easily recog-
nized from their shift. Their shift is highly temperature, concentration and sol-
vent dependent. Protons that are part of hydrogen bonds do exchange much
more slowly with labile solvent deuterons and can therefore be differentiated
from others. This is used in protein NMR to identify β-sheets or α−helices that
display extended hydrogen bond networks.
FIGURE 8. The hydroxyl group at the top of the molecule is part of a sym. H-bond and will therefore be
down-field shifted.
∆σ 1 3r
3
χ
II
χ

– ( ) 3 θ cos ( ) [ ]1 4π ( ) ⁄ ⁄ =
O
O
HO
H
LECTURE COURSE: NMR SPECTROSCOPY
Fourth Chapter: Chemical shifts and scalar couplings Pg.60
1.7 Solvent effects:
It is very important to realize that different solvents may have different effects
on the chemical shifts. Quite often an overlapping signal can be resolved when
changing the solvent. Suitable solvents for causing large changes in chemical
shifts are benzene or acetone, which may completely change the appearance of
a spectrum that has been acquired in chloroform. This effect is especially pro-
nounced when benzene selectively complexes parts of the molecule due to the
ring-current effect from the aromatic ring. Such selective effects may be the
case when not all parts of the molecule can be accessed by the solvent.
1.8 Shifts due to paramagnetic species:
Paramagnetic compounds have unpaired electrons. When paramagnetic impu-
rities are contained in the sample, the lines are usually considerably broadened
for solvent excessible protons. However, the chemical shift can also be influ-
enced. The mechanism is Fermi-contact interaction (see section scalar cou-
plings) between the nuclear spin and the unpaired electron. This effect is
moderate, since electron density of the unpaired electron at the observed
nucleus (which is usually not in the same molecule) is required. Since relax-
ation times of electrons are very short, the splitting due to the electron,proton
coupling is removed rapidly (self-decoupling), so that comparably sharp lines
can be observed. Paramagnetic reagents, also known as shift reagents, serve to
disperse proton spectra. Thereby, a 2 ppm shift range for aliphatic protons can
be dispersed over 6 ppm after addition of the shift reagent.
2. SCALAR COUPLINGS:
Two types of interaction between spins are known:
• dipolar coupling
• scalar coupling
The contributions from dipolar coupling usually cannot be observed in isotro-
pic (liquid) phase. This is so because the dipolar coupling depends on the ori-
entation of the connecting vector to the static field. This orientation rapidly
changes in solution due to molecular tumbling and the dipolar coupling there-
LECTURE COURSE: NMR SPECTROSCOPY
Fourth Chapter: Chemical shifts and scalar couplings Pg.61
fore averages to zero. However, it can be observed in the solid state or in liquid
crystals.
The scalar coupling leads to a splitting of resonance lines. The effect is medi-
ated via the electrons and its magnitude therefore rapidly decreases when the
number of intervening bonds increases.
The basic mechanism that propagates the coupling is the Fermi-contact inter-
action. This effect describes the coupling between the nuclear and the electron
spin:
Electrons that occupy an orbital that has a non-vanishing electron density at
the nucleus (such as s-electrons) have the electron spin antiparallel to the
nuclear spin (Hund's rule). Is the atom bonded to another atom, then the two s-
orbitals of the separate atoms form a σ-orbital, which is occupied by two elec-
trons with antiparallel spin (Pauli principle). The second nuclear spin can now
have its spin parallel or antiparallel to the spin of the second electron depend-
ing on whether it is in the α- or β- state. The antiparalell alignment is energeti-
cally favourable and hence gives a signal at lower frequency. The magnitude of
the coupling is expressed as the scalar coupling constant and can be calculated
as:
where γ
A
and γ
B
are the gyromagnetic ratios of the involved nulcei, | Ψ
A
(0)|
2
is
the electron density at the site of the nucleus A and c
A
the coefficient of the
contribution of the atomic orbital A to the σ MO. ∆
T
is the triplet excitation
FIGURE 9. Spin states of nuclear (red) and electron (blue) spins for hydrogen atom (a) and singlet hydrogen
molecule (b) and triplet hydrogen (c) with corresponding energy diagram.
E
∆E= hν = hJ
a
b
c
a
b
c
J 2µ
0
g
e
µ
B
3 ⁄ ( )
2
γ
A
γ
B
Ψ
A
0 ( )
2
Ψ
B
0 ( )
2
c
A
2
c
B
2
1 ∆
T
⁄ ( ) =
LECTURE COURSE: NMR SPECTROSCOPY
Fourth Chapter: Chemical shifts and scalar couplings Pg.62
energy that measures the energy required to promote an electron from the sin-
glet into the triplet spin state (parallel alignment):
The scalar coupling constant is usually given the symbol
n
J, in which n indi-
cates the number of intervening bonds. As we will see later, the magnitude of
coupling depends on the amount of overlap of the involved electron orbitals.
The s-character of orbitals depends heavily on the hybridization of the
involved nuclei. This is very clear from the
1
J
1
H,
13
C coupling constants which
can be roughly categorized as:
•sp
3
: 140 Hz
•sp
2
: 160Hz
•sp: 250 Hz
The sp orbital has the highest content of s-character and hence gives the largest
coupling.
The coupling also depends on the gyromagnetic ratios of the involved nuclei.
When hydrogen is substituted by deuterium, the corresponding coupling to
another proton is scaled by the factor γ
D
/ γ
H
=1/ 6.514 . Therefore, the couplings
are sometimes reported in form of the reduced couplings, which are defined
as:
2.1 Direct couplings (
1
J):
In order to be able to detect scalar spin,spin couplings it is necessary that the
two protons are not isochronous, meaning that they don’t have the same chem-
ical shift. The one-bond coupling constant usually has a positive sign.
FIGURE 10. Singlet-triplet transition

T
κ
ik
J
ik
h ⁄ ( ) 2π γ
i
⁄ ( ) 2π γ
k
⁄ ( ) =
LECTURE COURSE: NMR SPECTROSCOPY
Fourth Chapter: Chemical shifts and scalar couplings Pg.63
2.2 Geminal couplings (
2
J):
Geminal proton couplings largely depend on the hybridization of the involved
carbon nuclei:
To be able to observe these couplings the geminal bonded protons need to be
diastereotopic in order to give separate proton frequencies.
2.3 Vicinal couplings (
3
J):
Vicinal couplings display a characteristic dependence upon the involved dihe-
dral angle:
according to the relation:
3
J= 7 - 1.0 cosφ + 5 cos2φ
for protons.
For
1
H,
13
C couplings a similar equation has been suggested:
3
J= 3.81 - 0.9 cosφ + 3.83 cos2φ
This relationship, also known as the Karplus relation, has been successfully
exploited to determine the stereochemistry of compounds. Of course, it
FIGURE 11. Various geminal couplings
FIGURE 12. Left: Karplus curve, right: Definition of dihedral angles
H
2
C
H
H
109
-12.4 Hz
H
H
120
H
H
120 H
2
C=C
- 4.3 Hz
+2.5 Hz
H
H
b
a
3
J (Hz)
φ
φ/rad
LECTURE COURSE: NMR SPECTROSCOPY
Fourth Chapter: Chemical shifts and scalar couplings Pg.64
requires the dihedral angle to assume a certain value fixed over time. There-
fore, rapid averaging of dihedral angles (rotatable bonds) leads to averaging of
coupling constants, which for that case corresponds to the arithmetic mean
from the mainly populated rotational states, e.g. gauche and trans rotamers.
Open-chain aliphatic compounds therefore mostly display vicinal couplings of
about 7 Hz.
For systems where the bond cannot be rotated (e.g. cyclic systems or macro-
molecules with defined secondary structure such as proteins), the coupling is
very useful to determine the stereochemistry or derive structural constraints:
For example, in sugars the vicinal coupling between the anomeric proton and
the neigbouring proton determines whether the sugar is α or β.
The reason for the dependence of the vicinal coupling on the dihedral angle is
the follwoing: The scalar coupling is propagated via electrons. The angular
dependence comes into play, because the dihedral angle determines how large
the overlap of the molecular orbitals and thereby the efficiency of transfer is:
FIGURE 13. Vicinal couplings of systems with hindered rotation about C-C bonds
FIGURE 14. Overlap of adjacent orbiatals for φ=0° (left) and φ=90° (right).
3
Ja,e = 2-5 Hz
3
Ja,a = 10-13 Hz
3
Je,e = 2-5 Hz
3
Ja,b ≈ 11 Hz
3
Ja,b ≈ 18-19 Hz
H
2e
H
1a
H
2a
R
H
a
R'
H
b
R
H
a
H
b
R'
φφφ φ
LECTURE COURSE: NMR SPECTROSCOPY
Fourth Chapter: Chemical shifts and scalar couplings Pg.65
Further effects on the vicinal couplings are:
• electron negative substituents decrease
3
J
• increasing HCC bond angles decrease
3
J
• increasing C--C bond lengths decrease
3
J
2.4 Long-range couplings:
4
J couplings are rarely observed. For saturated systems they require the atoms
to be coplanar and in zigzag (W) conformation:
2.5 Couplings involving π electrons:
In principle, π electrons cannot propagate scalar couplings because π orbitals
have nodes at the position of the nuclei. Therefore, spin-correlation between σ
and π electrons is required:
Since π electron systems are highly delocalized, these interactions can be prop-
agated over many bonds. The orientation of the double bond in
4
J couplings is
not important, e.g. cisoid and transoid couplings are of similar magnitude.
2.6 The number of lines due to scalar spin,spin couplings:
In principle, each coupling doubles the numbers of lines. However, when cou-
plings are of similar magnitude, some lines overlap. In the absence of geminal
couplings (no diastereotopic protons) all couplings are usually due to vicinal
FIGURE 15. Systems with
4
J couplings.
FIGURE 16. Scalar couplings involving σ,π transfers
H
2e
H
4e
H
H
H
H
H
H
H
H
C C
H
σσσ σ
πππ π
LECTURE COURSE: NMR SPECTROSCOPY
Fourth Chapter: Chemical shifts and scalar couplings Pg.66
protons. In open-chain compounds single bond dihedral angles are rotation-
ally averaged so that all vicinal couplings are around 7 Hz (vide supra)´. In this
case the total number of lines of a single resonance due to the coupling with N
neighbouring protons is N+1. In cyclic or structurally well-defined compounds
where the couplings may be much different the total number is 2
(N-1)
.
The intensities of the lines in the case of overlapping lines (similar magnitude
of couplings) can be derived from the coefficient in the Pascal triangle:
FIGURE 17. Coupling of a proton a with two other protons b and c for the case of different (left) or
similar (right) couplings.
Number of coupled nuclei Number of lines rel. intensities
I=1/ 2 I=1
0 1 (singlet) 1
1 2 (doublet) 1:1
2 3 (triplet) 1:2:1
3 4 (quartet) 1:3:3:1
4 5 (quintet) 1:4:6:4:1
5 6 (sextet) 1:5:10:10:5:1
6 7 (septet) 1:6:15:20:15:6:1
0 1 (singlet) 1
1 3 (triplet) 1:1:1
2 5 (quintet) 1:2:3:2:1
3 7 (septet) 1:3:6:7:6:3:1
J
ab
J
ac
J
ac
J
ab
J
ac
J
ac

a

a
LECTURE COURSE: NMR SPECTROSCOPY
Fourth Chapter: Chemical shifts and scalar couplings Pg.67
2.7 Strong coupling:
The rules for line multiplicities and intensities described above are only valid
in the case of weak coupling. However, when the chemical shift difference is
not very large compared to the scalar coupling constant (∆δ> 10 J), these rules
do not apply anymore. In the strong-coupling case spin properties are mixed.
A practical consequence is that a resonance line cannot be referred to belong to
a spin A or B. Whereas in the limit of weak coupling a spin-flip of spin A does
not cause spin B to flip there is a probability to do so in the strong coupling
case. In order to derive coupling constants or chemical shifts from strongly
coupled spins these parameters may not be extracted from the spectrum but
have to be derived from a simulation and comparison to the measured spec-
trum. For the case of two dublets due to two strongly coupled protons the
inner lines are larger then the outer ones ("roof effect"). Thereby it is possible to
decide which signals are coupled with each other.
FIGURE 18. Second order effects depending on the chemical shift difference. The simulations were calculated using
ν
A
−ν
B
/J=15(1), 3(2), 1(3) and 0(4). In the case of the ABX system the X-part is shown separately.
4.0
1
2
3
4
4.8 4.9 5.0 ppm 4.8 4.9 5.0 ppm ppm
AB−System
(J =10Hz)
AB
ABX−System
(J =10Hz, J =6Hz, J =4Hz)
AB BX AX
LECTURE COURSE: NMR SPECTROSCOPY
Sixth Chapter:Relaxation Pg.68
1. RELAXATION:
As stated in the first chapter thermal equilibrium is a state in which the popu-
lation of α- and β-states corresponds to the Boltzmann distribution. Further-
more, the spins are uncorrelated in phase such that no transverse
magnetization exists. However, when RF pulses are applied the state of the
spins is pertubated away from equilibrium distributions. The process that
brings the spins back to thermal equilibrium is called relaxation:
It is important to note that a particular spin can be only in either the α- or the β-
state. What relaxation describes is the behaviour of magnetization which is
defined as the sum of the magnetic moments from all spins. However, to
understand the mechanisms of relaxation we will look at the fate of individual
spins.
Phenomenologically, relaxation is categorized into
1. longitudinal relaxation (or T1 relaxation) that describes the return of the z-
component of longitudinal (z-)magnetization to its equilibrium value. The
corresponding time constant of that process is called T1.
2. transverse relaxation (or T2 relaxation) that describes the decay of trans-
verse (x,y) magnetization. Analogously, the corresponding time constant is
called T2.
1.1 T1 relaxation:
The equilibrium distribution of α vs. β -state is governed by the Boltzman dis-
tribution:
FIGURE 1. left: equilibrium state. right: non-equilibrium state, phases are correlated
B
o
=z
y
x
B
o
=z
y
x
#( )
#( )
( ) / α
β
α β
=
− −
e
E E kT
LECTURE COURSE: NMR SPECTROSCOPY
Sixth Chapter:Relaxation Pg.69
Since α and β -states correspond to different energies changing the relative
populations of these states changes the energy of the system. Therefore, T1
relaxation is an enthalpic process. The energy is transferred to or taken from
other spins. The surrounding of spins is often called the lattice and hence T1
relaxation is often referred to as spin-lattice relaxation:
Note that the vectors shown in the figure above represent the magnetization
vectors rather than magnetic moments from individual spins. Longitudinal
magnetization decays exponentially according to
The T1 relaxation time determines the pulse repetition rate, the delay that has
to be inserted between individual scans. T1 times for protons are in the range
of 0.5 to a few seconds. T1 times for quadrupolar nuclei (I > 1/ 2) can be rather
short (ms range). Degassing the sample will remove paramagnetic oxygen
which otherwise facilitates T1 relaxation. Therefore, degassing samples is use-
ful when measuring small NOE effects.
1.2 T2 relaxation:
The transverse relaxation determines how fast phase coherence between spins
is lost. Since dephasing in the spins does not cause any changes in the relative
population of α− and β-state, it is not changing the energy of the system. T2
relaxation is merely a entropic process. It is often referred to as spin,spin
relaxation:
FIGURE 2. Return of the z-component of magnetization to the equilibrium value. The initial state may
have been created through population inversion arising from an 180˚ pulse.
y
x
y
x
y
x
y
x
y
x
z z
z z z
M t M t e
z z
t T
( ) ( )
/
=

0
1
LECTURE COURSE: NMR SPECTROSCOPY
Sixth Chapter:Relaxation Pg.70
Once the transverse relaxation time T2 passed by transverse magnetization has
decayed to 1/ e of its original value:
The transverse relaxation time determines the linewidths of the signals. The
shorter T2 the broader the signals. The linewidth at half height of the signals
can be expressed as:
There is no reason to sample the signal for times much longer than T2 because
only noise will then be added to the FID. The T2 time and hence the linewidth
also determines the theoretically achievable resolution.
1.3 The mechanisms of relaxation:
In principle the spin system may return to equilibrium via stimulated relaxa-
tion (some kind of energy exchange process that initiates relaxation) or by
spontaneous relaxation. It can be shown that the probability for spontaneous
relaxation is far too low to account for it.
Mechanistically, relaxation is caused by additional fields that happen to have
exactly the frequency that corresponds to the required transition. For example,
T1 relaxation takes place if spins change from the α- to the β-state or vice versa.
FIGURE 3. Top: Dephasing of transverse coherence leading to T2 relaxation. Lower: Influence of T2
relaxation on the appearance of the FID.
X
y
X
y
X
y
X
y
X
y
X
y
∆t
t
I
Det
t
e
- t/T 2
I
Det
M t M t e
x y x y
t T
, ,
/
( ) ( ) =

0
2
∆ν
π
1 2
2
1
/
=
T
LECTURE COURSE: NMR SPECTROSCOPY
Sixth Chapter:Relaxation Pg.71
The energy difference between these states correspond to a specific frequency
and this frequency matches to a field fluctuating at
There are two major mechanisms by which these fluctuating fields are formed:
• dipole-dipole interaction between two different spins
• chemical shift anisotropy
Both processes are connected to the movement of spins in space due to overall
tumbling of the molecules or due to internal motions.
Dipole-dipole induced relaxation:
Spin A close in space to spin B causes a (small) dipole moment at the nucleus B:
The induced local field can be expressed as:
The magnitude of the induced field depends on both the distance of the two
interacting nuclei and on the angle formed between the interatomic vector and
the static field. Through molecule tumbling the angle φ permanently changes
its magnitude causing a fluctuating field.
For protons that relax mostly through dipole,dipole interaction with other pro-
tons the transverse relaxation time T2 and thereby its linewidth is determined
by a) how far the next protons are in space and b) the overall tumbling time of
the molecule. It is often found that isolated protons (those that do not have
other protons on the neighbouring carbons) display incorrect integrals in 1D
proton spectra. This is due to the fact that T1 relaxation for these protons is
FIGURE 4. Left: definition of the vector connecting two spins and its orientation φ with respect to the external field.
Right: Overall tumbling changes φ.
∆E E E h = − =
α β
ν
ν
γ
π
=
B
2
B
o
φ
1
H
15
N
H
N
B
o
φ
r
B
r
loc
=
− µ φ ( cos ) 3 1
2
3
LECTURE COURSE: NMR SPECTROSCOPY
Sixth Chapter:Relaxation Pg.72
inefficient and therefore these protons do not have completely relaxed in
between different scans. The line-broadening of signals due to slow overall
tumbling is obvious from the linewidth of spectra from large proteins that dis-
play very broad lines.
The distance between geminal protons depends on the bond geometries but
for all other protons it is determined by the structure. An important application
therefore is the NOE effect, a method that depends on relaxation properties of
spins and helps to elucidate the three-dimensional arrangement of protons (see
next chapter).
1.4 Other relaxation mechanisms:
Any particular event that will cause a fluctuating field at the site of the nucleus
may contribute to relaxation provided that it delivers spectral density at any of
the possible NMR transitions.
1.4.1 Chemical shift anisotropy (CSA):
Non-spherical distribution of electron density (e.g. occurring for sp
2
hybridized carbon nuclei) will cause a fluctuating field upon rotation of the
nucleus which serves as a efficient source for relaxation:
The efficiency of CSA relaxation increases with the square of the magnetic
field and is the major relaxation source for amide nitrogen nuclei at fields
higher than 600 MHz. It is also the major relaxation source for non-proton
bearing carbon nuclei such as carbonyl or olefinic carbons.
1.4.2 Scalar relaxation:
Relaxation may also be induced when the scalar spin,spin coupling to another
nucleus fluctuates rapidly. This could be caused by
• chemical exchange of the coupled nucleus (scalar relaxation of the first kind)
FIGURE 5. Dependence of electron shielding for carbonyl carbons on the orientation of the external field relative to
the p
z
orbital
C
O
σ
zz
C
O
σ
zz
LECTURE COURSE: NMR SPECTROSCOPY
Sixth Chapter:Relaxation Pg.73
• rapid T1 relaxation of the coupled nucleus (scalar relaxation of the second
kind).
Scalar relaxation of the first kind is observed for protons coupled to quickly
exchanging hydroxyl protons. Scalar relaxation of the second kind is fre-
quently encountered for protons coupled to quadrupolar nuclei. An practical
example is the case of nitrile carbons in which the carbon is mostly coupled to
the quadrupolar
14
N nucleus and is usually significantly broadened. Scalar
relaxation is much more likely to effect T2 than T1 relaxation times.
1.4.3 Quadrupolar relaxation:
Nuclei with a spin > 1/ 2 rapidly relax under the influence of a electric field
gradient. T1 and T2 relaxation is very fast for these nuclei provided that the
ligand environment of the nucleus is non-symmetrical. This is seen for
14
N,
which gives a narrow resonance in the tetrahedral NH
4
+
ion but much broader
lines in asymmetrical environment such as pyrrole.
1.4.4 Spin-rotation relaxation:
Rapidly rotating groups such as methyl groups induce a fluctuating field at the
frequency of rotation. This effect is usually of minor importance.
1.4.5 Interaction with unpaired electrons:
The interactions can be either of dipolar or scalar nature. The effects are dra-
matic such that small contaminations with paramagnetic impurities may
severely broaden the lines. Therefore, oxygen (which is paramagnetic,diradi-
cal) is often removed through thaw and freeze cycles to increase T1.
For
13
C

NMR relaxation reagents like Cr(acac)
3
are added in very small quanti-
ties to bring the T1's down to about 1s (otherwise, carbonyl nuclei may have
T1's of 20-30sec) to allow faster pulsing.
1.5 The motional properties:
In this section we will see how the dependence on the motional properties is
expressed mathematically. The time-dependence of the motions is of prime
importance since it determines the frequency at which the induced local fields
fluctuate and therefore whether they may contribute to relaxation or not. In
order to describe how the angle φ changes with time we use the correlation
function g(τ):
that describes how quickly a function changes with time. The following figure
displays the correlation function for functions with no (left), little (middle) or
g f t f t ( ) ( ) ( ) τ τ = +
LECTURE COURSE: NMR SPECTROSCOPY
Sixth Chapter:Relaxation Pg.74
rapid (right) time dependence:
Since the NMR signal decays exponentially (this can be derived from the line-
shape which must be lorentzian for exponential decay), g(τ) is believed to be
exponential:
τ
c
is the correlation time which is defined to be the time required for a 360˚
rotation of the molecule. A very approximate formula valid for globular pro-
teins in water is τ
c
≈10
-12
M (M = molecular weight in Dalton) but depends
highly on temperature, shape etc.
We are not interested so much into the time it takes for a molecule to change its
spatial arrangement but rather on the frequency with which these changes take
place. Therefore, the spectral densities, which are the Fourier transform of the
correlation function, are preferred. The spectral density J(ω) tells us how much
power is available from the motion of the molecule to cause fluctuations at the
frequency ω. It can be calculated as:
The dependence of the spectral densities on the frequencies are shown in the
figure below for large (left), medium-sized (middle) and small molecules
(right). It is clear that the densities at low frequencies increase with increasing
correlation times (larger molecules). This can be rationalized in the following
way: The overall power from all frequencies (the integral under the spectral
density function) must remain the same for all molecules. However, smaller
molecules may rotate faster than larger molecules so that the highest possible
frequency is lower for larger molecules.
FIGURE 6. typical correlation functions for no decay (left), slow decay (middle) and fast decay (right.
g e
c
τ
τ τ
( ) =
− /
J
c
c
( ) ω
τ
ω τ
=
+
2
1
2 2
LECTURE COURSE: NMR SPECTROSCOPY
Sixth Chapter:Relaxation Pg.75
The motional fate of a molecule can be described by the following scenario: A
molecule rotates with a certain frequency. Then it hits another molecule and
the rotation is slowed down or stopped. After the crash the molecule starts to
rotate again until it has reached its highest possible frequency or has hit
another molecule:
Small molecules therefore posses a broad band of rotational frequencies
whereas the larger molecules have more spectral density at the lower frequen-
cies (in fact, the highest spectral density is at frequency zero). We will see later
that the frequencies that match possible NMR transitions determine how
quickly a nucleus may relax.
1.5.1 The dependence of the relaxation rates on the fluctuating fields in x,y or z
direction:
An additional field in z-direction means that the spins additionally precess
about the z-axis with the frequency of that field.In contrast, fields in x- or y-
directions cause spins to flip from the α-to the β-state or vice versa.
FIGURE 7. Spectral density functions for no decay (left), medium decay (middle) and fast decay (right).
FIGURE 8.
H
N
H
N
ν
H
N
H
N H
N
ν ν ν
LECTURE COURSE: NMR SPECTROSCOPY
Sixth Chapter:Relaxation Pg.76
The longitudinal relaxation time depends on the frequency of α- to β-state
transitions and therefore on the fields along x or y:
In order to be effective these fields must precess with frequencies comparable
to the larmor frequency about z. This is analogous to the case of the B
1
field
which can only influence spins when the field precesses about the z-axis.
The transverse relaxation time is determined by the amount of dephasing of
transverse magnetization. Obviously, fields along z change the precession fre-
quency since they alter the strength of the static field (which is also along z):
This mechanism is represented by the field term along z in the equations
above. Dephasing at J(0) is effective because if the z-field would fluctuate, say
from the +z-direction to the -z-direction, the dephasing effect from it would be
reversed and averaged out. It can therefore only be effective if that field stays
in the +z direction and hence the spectral density at zero frequency is impor-
tant. In addition, rotations about the x- or y-axis (causing α- to β-transitions)
will reduce the lifetime of the state (lifetime broadening). This can be seen from
the Heisenberg principle which states that the shorter the lifetime is the larger
the uncertainty in energy is. The contribution of lifetime broadening to T2 is
the same as to T1 since it uses the same mechanism and hence similar spectral
densities are required.
FIGURE 9.
B
o
=z
y
x
1
1
2 2 2
T
H H J
x y
∝ + γ ω ( ) ( )
1
0
1
0
2
2 2 2
2
2 2 2
T
H J H J
T
H J H J
x
z y
y
z x
,
,
( ( ) ( ))
( ( ) ( ))
= +
= +
γ ω
γ ω
LECTURE COURSE: NMR SPECTROSCOPY
Sixth Chapter:Relaxation Pg.77
1.6 Excurs: The Lipari-Szabo model for motions:
The Lipari-Szabo model (also sometimes referred to as the “modelfree” approach) factorizes
the autocorrelation function into a correlation function for overall tumbling and one for inter-
nal motions:
The overall correlation is assumed to decay exponentially
The correlation function describing internal motions is described as
The generalized order parameter S
2
describes the spatial restriction of the internal motion
with respect to a molecule-fixed coordinate system. τ
e
is the effective correlation time for that
internal motion. A value of 1 means that a particular vetor does not move relative to the
molecular frame and a value of zero indicates that movement of a vector is completely uncor-
related to overall tumbling which is the case for highly flexible loop regions in globular pro-
teins for example.
The spectral densities in this model is expressed as:
The strength of the Lipari-Szabo interpretation is that it gives an impression about the rela-
tive “floppiness” of parts of the molecule in absence of any specific model about the exact
nature of the internal motion. Assuming free diffusion in a cone the half-angle θ expressing
the spatial restriction of the internal motion can be calculated as
which translates for an S
2
of 0.4 into a half angle of 45°:
g t ( ) g
o
t ( ) g
i
• t ( ) =
g
o
t ( ) e
t τ
R
⁄ –
=
g
i
t ( ) S
2
1 S
2
– ( )e
t τ
e
⁄ –
+ =
J ω ( ) S
2
τ
R
1 ωτ
R
+ ( )
2
⁄ ( ) 1 S –
2
( )τ
e
1 ωτ
e
+ ( )
2
⁄ + =
S
2
θ
max
( ) 0.5 θ
max
( ) 1 θ cos +
max
( )
2
cos =
LECTURE COURSE: NMR SPECTROSCOPY
Sixth Chapter:Relaxation Pg.78
1.7 The nature of the transitions:
So far we have only been talking about a single spin changing his state due to
interaction with the surrounding spins. A transition that involves a single spin
going from the α- to the β-state is called a single-quantum transition:
Alternatively two spins may simultaneously go from the α- to the β-state (dou-
ble-quantum transition). Furthermore one spin may go from the α- to the β-
state and another one from the β- to the α-state in a correlated fashion (zero-
quantum transition). The frequency for the double quantum transition corre-
sponds to the sum of the frequencies of the individual spins whereas the zero-
quantum frequencies are formed from the difference of their corresponding
frequencies. For homonuclear spin systems the zero-quantum frequencies are
very low (kHz range) and the double quantum frequencies very high.
For T1 and T2 processes spectral densities at frequencies corresponding to
different transitions are utilized. It can be seen from the figure below that for
T2 relaxation spectral density at J(0) is important in contrast to T1 and NOE. As
we have seen before J(0) steadily increases with increasing molecular size and
for larger molecules such as proteins almost all spectral density is at J(0).
Hence T2 times are very short for large molecules leading to very broad lines.
FIGURE 11. left: I-spin single quantum transitions. Right: S-spin single quantum transitions
FIGURE 12. zero- and double quantum transitions
single -quantum transitions
αα
αβ
ββ
βα
i -Spin
αα
αβ
ββ
βα
S-Spin
αα
αβ
ββ
βα
zero-quantum transition
αα
αβ
ββ
βα
double -quantum transition
LECTURE COURSE: NMR SPECTROSCOPY
Sixth Chapter:Relaxation Pg.79
Note that the parameters in the figure below are given for
15
N relaxation data
(the mechanism is dipolar relaxation with
1
H). For
1
H relaxation, the zero
quantum frequencies (which are the difference of the chemical shifts) are in the
0-10 KHz range and therefore very close J(0) whereas for
15
N nuclei the zero-
quantum frequencies are not so much away from the proton frequencies (MHz
range).
For
15
N magnetization, relaxation is mainly due to
1
H,
15
N dipolar interactions
and
15
N chemical shift anisotropy. It depends on spectral density of single
quantum proton coherences, single quantum nitrogen coherences and hetero-
nuclear (
15
N,
1
H) double and zero-quantum coherences:
in which ∆ denotes the chemical shift anisotropy of nitrogen. Note, that the
rates of T1 and T2 relaxation differ in the contribution of J(0) for T2. Fore large
molecules, J(0) contains almost all spectral density. Hence, T2 relaxation is very
fast, and this is the principal reason why large molecules display very broad
nmr lines.
FIGURE 13. Dependence of T1, T2 and NOE upon spectral densities at various frequencies.
T1
T2
NOE
o
ω
N
ω
N

-

ω
H
ω
H
ω
N

+

ω
H

1
T
1
= R
N
(N
Z
) =
γ
H
2
γ
N
2
h
2
4 r
N,H
6
J (ω
H
− ω
N
) + 3 J (ω
N
) +
6 J (ω
H
+ ω
N
)
|
¦
|
|
¦
|
+

2
ω
N
2
3
J (ω
N
)
1
T
2
= R
N
(N
x ,y
) =
γ
H
2
γ
N
2
h
2
8 r
N,H
6
4 J (0 ) + J (ω
H
− ω
N
) + 3 J (ω
N
) +
6 J (ω
H
) + 6 J (ω
H
+ ω
N
)
|
¦
|
|
¦
|
+

2
ω
N
2
3
2
3
J (0 ) +
1
2
J (ω
N
)
|
¦
|
|
¦
|
LECTURE COURSE: NMR SPECTROSCOPY
Sixth Chapter:Relaxation Pg.80
The dependence of transverse and longitudinal relaxation upon the correlation
time is shown in the next figure. T2 continuously gets shorter with increasing
molecular size due to the increase in spectral density at J(0). T1 however passes
a minimum. Following the point where spectral density at the zero-quantum
frequencies decreases T1 is getting larger again. (T1 relaxation does not depend
upon spectral density at J(0):
1.8 Measurement of relaxation times:
T1 relaxation times are usually determined from the inversion recovery
sequence: 180 deg pulse…delay…90 deg pulse…delay ..acquisition
FIGURE 14. Dependence of T1 and T2 upon the overall tumbling time
T1
T2
LECTURE COURSE: NMR SPECTROSCOPY
Sixth Chapter:Relaxation Pg.81
In this sequence, magnetization is inverted by application of a 180 degree
pulse. A delay follows during which T1 relaxation takes place bringing the -z
magnetization back towards +z. Afterwards a 90 degree pulse along y turns
the magnetization onto the x-axis into observable signal. The magnitude and
sign of the x-magnetization at the end of the sequence depends on a) the T1
constant and b) the relaxation delay ∆.
Transverse relaxation time is determined from a Carr-Purcell Spin echo. In
principle, one could simply measure the decay of transverse magnetization fol-
lowing a 90 degree pulse. However, inhomogeneity of the static field leads to
accelerated transverse relaxation. Usually, one is not interested into the contri-
bution from field inhomogeneity (this would mean that the transverse relaxa-
tion time would depend on the quality of shimming) and therefore the Carr-
Purcell sequence that eliminates the additional T2 relaxation due to field inho-
mogeneity is applied:
FIGURE 15. Inversion recovery.
y
x
z
y
x
z
z
z
y
x
z
z
180 deg
90 deg
90 deg
∆t
2∆t
LECTURE COURSE: NMR SPECTROSCOPY
Sixth Chapter:Relaxation Pg.82
In this sequence 180 degree pulses are applied during the T2 relaxation delay
equally spaced by delay periods. The effect of the 180˚ pulses is to refocus
differential precession due to field inhomogeneity. The sequence is also
referred to as an spin-echo.
For both experiments, the inversion recovery and the Carr-Purcell sequence a
set of 1D (or 2D) spectra is recorded with different relaxation periods. The
intensities of the remaining signal is measured and plotted against the
relaxation delay. Mostly these plots yield decaying exponentials and by fitting
procedures (least squares fit to the experimental data) it is possible to extract
the time constant for the decay:
FIGURE 16. Carr-Purcell spin echo.
y
x
z
z
90 deg
y
x
z
y
x
z
y
x
z
z
∆t
1
8
0

d
e
g
∆t
LECTURE COURSE: NMR SPECTROSCOPY
Sixth Chapter:Relaxation Pg.83
FIGURE 17. Analytical formula to describe the decay of longitudinal (left) and transversal (right) magnetization.
I
n
t
e
n
s
i
t
y
0.4 0.8 1.2 1.6 2.0
[sec]
I
n
t
e
n
s
i
t
y
[msec]
80 160 240
I(t) = A e
-R1/t
+ B I(t) = A e
-R2/t
+ B
T1
T2
LECTURE COURSE: NMR SPECTROSCOPY
Seventh Chapter: The NOE Effect Pg.84
1. THE NUCLEAR OVERHAUSER EFFECT (NOE):
If one resonance A is irradiated, an increase (positive NOE) or decrease (nega-
tive NOE) of signal intensity of other resonances such as resonance C is
observed when spin C is close in space to spin A:
This phenomenon is called nuclear Overhauser effect or NOE. The NOE effect is
the method for elucidation of 3D structural features and stereochemistry using
NMR together with information from scalar spin,spin couplings. The NOE
enhancement factor η is defined as
in which I and I
o
is the observed intensity of the resonance of spin I with and
without irradiation of spin S, respectively. The efficiency through which the
NOE is transferred from spin I to spin S depends strongly on the distance of
the two protons involved and on the tumbling properties of the molecule:
Because of the distance dependence, the NOE is the major tool for elucidation
of stereo-chemistry of molecules in solution. The NOE depends on the relax-
ation rates of zero- and double quantum transitions:
σ
IS
is the cross-relaxation rate. Physically speaking, it characterizes the rate of
FIGURE 1. Irradiation of resonance A leads to a increase of peak intensity of the neighboring spin C (positive NOE)
or to a decrease of peak intensity (negative NOE).
Reference
positive NOE
negative NOE
A B
C
A
C
B
η = =

( )
f S
I I
I
I
o
o
{ }
η τ =
( )

f r
c
6
f S
I
S
I
IS
IS
{ } =
γ
γ
σ
ρ
LECTURE COURSE: NMR SPECTROSCOPY
Seventh Chapter: The NOE Effect Pg.85
dipole-dipole transitions that give rise to the NOE. It can be expressed as:
Therein, W
2QC
and W
ZQC
are the rates for double-quantum and zero-quantum
transitions.
ρ
IS
is the longitudinal-relaxation rate. It is the rate constant for direct dipolar
relaxation of spin I by spin S. It corresponds to the rate of recovery of I-signal
after selective inversion. In a two-spin system is ρ
IS
equals to 1/ T1. In multi-
spin systems, however, dipolar relaxation with other spins contributes to 1/ T1
and then ρ
IS
is not equal to 1/ T1. In the case of multispin systems
ρ
IX
corresponds to dipolar interaction with all other spins X and ρ* to other
relaxation mechanisms for spin I such as CSA. The important point to note
here is that the magnitude of a NOE between two particular spins not only
depends on their distance (and on the tumbling of the molecule) but also on
the fact how many other protons are in close distance:
This is nicely demonstrated in the figure above which shows the magnitude of
the NOE between two protons A and B. The smaller the angle α the closer the
third spin C is and the more efficient dipolar relaxation of spin A by spin C
becomes thereby dramatically reducing the magnitude of the NOE between
spins A and B. Note that the distance r
AB
remained unchanged!
FIGURE 2. Dependence of the strength of the NOE on spin A caused by irradiation of spin B on the bond angle α.
σ
IS QC ZQC
W W = −
2
R
T
IS IX
x
I 1
1
1
= = + +

ρ ρ ρ
*
f
A
{B}
ααα α
LECTURE COURSE: NMR SPECTROSCOPY
Seventh Chapter: The NOE Effect Pg.86
1.1 Experiments to measure NOEs:
In principle, a NOE enhancement can be triggered whenever the population of
α- and β- states of a spin system are different from the equilibrium value. This
can be accomplished by
• an inversion pulse (180 degree pulse) that inverts the relative
populations of α- and β- states
• saturation of a resonance line that causes the corresponding α- and β-
states to be equally populated.
Utilizing these two different means of disturbing the populations of spin sys-
tems the experiments for measuring NOEs can be categorized into the follow-
ing
• the steady-state NOE experiment, in which a resonance is selectively
irradiated with low power for a time τ
m
sufficiently long to completely
saturate the transition and propagate the NOE (approx. > 0.5s). A
reference spectrum is recorded without irradiation and subtracted. The
difference spectrum shows only signals which have received a NOE
(that means, which have changed their intensity) and the irradiated
resonance.
• the transient NOE. In this experiment a resonance is selectively inverted
with a selective 180˚ pulse. After a delay τ
m
for NOE buildup a 90˚ read
pulse is applied and a 1D acquired. Again, one experiment with and one
without the selective 180˚ pulse are subtracted from each other. The
famous NOESY (or ROESY) is the 2D variant.
FIGURE 3. Left: Equilibrium population. Middle: Population after selective I-spin inversion pulse. Right:
Population after saturation of the I-spin resonance.
I
I
S
S
αα
βα
ββ
αβ
I
I
S
S
I
I
S
S
LECTURE COURSE: NMR SPECTROSCOPY
Seventh Chapter: The NOE Effect Pg.87
1.2 The steady-state NOE:
The steady state NOE depends on the geometry of all protons nearby, not only
on those saturated and observed. The enhancement is:
In this equation the first term represents the direct contribution to the NOE.
The magnitude due to the direct NOE is influenced by nearby protons because
they have an influence on T1.
The second term in the equation above describes the indirect NOE transfer.
The indirect transfer is a 3-spin effect. It is also called spin-diffusion. In spin-
diffusion a relay spin that is close to both spins serves to transfer the NOE.
Depending on the correlation time and the sign of the NOE one distinguishes
two cases:
1.2.1 Extreme narrowing (η
max
>0):
• Most enhancements are positive but some can also be negative, depending on
the geometry.
• T1 and T2 values are very similar.
• The lines are rather sharp (hence the name extreme-narrowing).
• The influence of the indirect effect is smaller but noticeable. This is
shown in the figure below that displays the contribution due to the 3-
spin effect depending on the angle α (extreme narrowing).
FIGURE 4. Pulse-schemes for measuring of steady state NOE (left) and transient NOE(right).
τ
m
τ
m
Ref
NOE
steady-state
tr ansi ent noe
f S
r
r r
f S r
r r
I
IS
IS IX
x
X IX
IS IX
x
x
{ }
{ }
max max
=
+

+
|
|
|
|
|
|
|
|
|
|

− −

− −
∑ ∑

η η
6
6 6
6
6 6
LECTURE COURSE: NMR SPECTROSCOPY
Seventh Chapter: The NOE Effect Pg.88
1.2.2 Spin-diffusion (η
max
<0):
• In the negative NOE regime (large molecules), all enhancements are negative.
• The T2 values are very much shorter than T1.
• The lines are broad.
FIGURE 5. Contributions of direct and indirect (spin diffusion) effects to the overall NOE.
FIGURE 6. Steady-state enhancements depending on the correlation time for a four-spin system. The
relative distances between spins A,B,C and D are 1:2:1 as indicated in the insert. Resonance B is
irradiated.
ααα α
f
C
{A}
direct direct
indirect
total
A
B
C
D
1
1 2
NOE
f
A
{B}
f
C
{B}
f
D
{B}
ωτ
C
LECTURE COURSE: NMR SPECTROSCOPY
Seventh Chapter: The NOE Effect Pg.89
Spin-diffusion is very effective and steady-state NOE measurements are completely
useless. This is shown in the figure above. When the molecules have gained a
certain size the spin-diffusion effect spreads the NOE out to all other protons
(see the magnitude of the NOE for ωτ
c
> 100) respectable of what their distance to
the irradiated proton is!
In order to circumvent the problems associated with spin-diffusion the trun-
cated-driven NOE has been used, in which the irradiation time is limited to
short periods. In both regimes, the extreme narrowing and the spin-diffusion
limit, enhancements are non-symmetrical due to possible relaxation leakage
with a third spin:
1.3 The transient NOE:
In the transient NOE experiment a resonance is inverted by application of a
selective 180 degree pulse or unselectively in a 2D experiment (NOESY). The
NOE enhancement is:
The transient NOE has some features that are remarkably different from the
steady-state NOE:
• Enhancements are symmetrical
irrespective whether spin S has another proton close in space (which quenches
the NOE in the steady state case dramatically).
• Using short mixing times NOE information is still useful in the spin-diffusion
case. Spin-diffusion can be recognized from the buildup curves of the NOEs (a
number of NOESY experiments are recorded with increased mixing times.
Spin-diffusion cross peaks should show a characteristic induction phase).
• 1D transient and NOESY experiments give identical enhancements.
The following figure shows the transient NOE buildup upon irradiation of
f S f I
I S
{ } { } ≠
f S
D
e e
D R R R R R
I
R D R D
I S IS I S
m m
{ }
( ) ' (
( ' ) ( ' )
)
= −
( )
= − + = +
− + − −
σ
σ
τ τ
1
4
1
2
2 2
f S f I
I S
{ } { } =
LECTURE COURSE: NMR SPECTROSCOPY
Seventh Chapter: The NOE Effect Pg.90
Lys-56 NH of bovine phospholipase A
2
and observation of Ala-55 NH (N), Lys-
56 β
1
-H and β
2
-H depending on the used mixing time for molecules in the
extreme narrowing (τ
c
= 3x10
-11
or 3x10
-10
) or in the spin-diffusion limit (τ
c
=
3x10
-9
or 3x10
-8
):
In the extreme narrowing the spin-diffusion peak β
2
-H is of negligible inten-
sity. In the spin-diffusion limit it can still be distinguished from the genuine
NOE peaks at short mixing times. This is in contrast to the use of steady-state
NOE's in that case.
1.4 The state of the spin system and the density matrix:
The density matrix describes the state of the spin-system. A one-spin system
may be in the α or β state or may undergo a transition from the α into the β
state (or vice versa). The density matrix contains the probabilities for a given
state or transition and hence is a convenient way to simultaneously represent
all possible states of a spin system. The density matrix contains diagonal ele-
ments which correspond to populations. These are states that do not undergo
transitions. Off-diagonal elements are transitions. In thermal equilibrium all
off-diagonal elements are zero.
A two-spin system may be in the αα, the αβ, the βα or the ββ state or may
undergo transitions between them. The
FIGURE 7. Strength of the spin-diffusion peak (β2) in dependence of the correlation time.
τ
C
=3 x 10
-11
τ
C
=3 x 10
-10
τ
C
=3 x 10
-9
τ
C
=3 x 10
-8
NOE
LECTURE COURSE: NMR SPECTROSCOPY
Seventh Chapter: The NOE Effect Pg.91

transitions are called single-quantum coherences, since only one spin changes
its state. Those are the only transitions which lead to observable signals during
detection periods.
The double quantum coherences:
and the zero-quantum coherences (flip-flop transitions):
are not directly observable but play a very important role for the theoretical
description of the nuclear Overhauser effect (NOE) because their efficiency
determines the cross-relaxation rate. Double quantum transitions involve tran-
sitions where two spins flip the same way and in zero-quantum transitions the
two spins undergo opposite flips. Double quantum coherences evolve with the
sum of the chemical shifts of the comprising spins, zero quantum coherences
evolve with the difference of their chemical shifts:
FIGURE 8. Occupied states of the density matrix (left) of populations and single-quantum transitions with
corresponding transitions.
αα αβ αα βα
αβ αα βα αα
-→ - -→ -
-→ - -→ -
or or
or
αα ββ ββ αα -→ - -→ - or
αβ βα βα αβ -→ - -→ - or
αα
αβ βα ββ
αα
αβ
βα
ββ
Populations
αα
αβ
ββ
βα
αα
αβ
ββ
βα
Single-Quantum Transitions
I-Spin S-Spin
αα αβ βα ββ
αα
αβ
βα
ββ
LECTURE COURSE: NMR SPECTROSCOPY
Seventh Chapter: The NOE Effect Pg.92
1.5 The sign of the NOE:
The sign of the NOE can be positive (small molecules, extreme narrowing) or
negative (large molecules, spin-diffusion limit). The dependence on the size of
the molecule (to be more specific: on their correlation time) comes into play
because the cross-relaxation rate is defined as:
For proton,proton NOEs the zero-quantum frequencies are close to zero and
the double-quantum frequencies are very high. As we have seen before large
molecules have spectral density only at frequencies close to zero. Therefore,
large molecules relax via zero-quantum transitions whereas small molecules
mostly use double-quantum transitions, hence the change in the sign of the
NOE:
FIGURE 9. Occupied states of the density matrix (left) of zero- and double-quantum transitions with corresponding
transitions.
αα
αβ
ββ
βα
Zero-Quantum Transitions
αα
αβ
ββ
βα
Double-Quantum Transitions
αα αβ βα ββ
αα
αβ
βα
ββ
αα αβ βα ββ
αα
αβ
βα
ββ
σ
IS QC ZQC
W W = −
2
LECTURE COURSE: NMR SPECTROSCOPY
Seventh Chapter: The NOE Effect Pg.93
This is the reason, why NOE spectra give very disappointing results for
medium sized molecules (approx. 2000 m.wt. at RT). At this size efficiency of
zero-quantum and double-quantum transitions is approximately the same and
therefore the cross-relaxation rate (which is the difference between the two
rates) is close to zero:
The absolute size of zero- and double-quantum transitions depends on the
strength of the applied field. In the rotating frame NOE (ROE) experiment an
additional field, the so-called spin-lock field, is applied along a transverse axis
(x- or y-axis). In the ROE experiment magnetization therefore precesses about
the x- (or y-) axis with a much lower frequency as the magnetization precesses
about the z-axis in the NOE experiment. Because the B
1
field is much weaker
(kHz range instead of MHz range), the zero- or double-quantum transitions
have much lower frequencies, and hence relaxation always takes place via the
FIGURE 10. Spectral densities for a small (left) or large (right) molecule. Middle: Max. NOE in
dependence of the correlation time.
FIGURE 11. NOE and ROE dependence on the correlation time.
J(ω)
og ω
J(ω)
og ω
LECTURE COURSE: NMR SPECTROSCOPY
Seventh Chapter: The NOE Effect Pg.94
double-quantum transitions and no zero crossing is observed:
The ROE buildup is about 2.5 times faster than the NOE buildup and hence
shorter mixing times can be used. However the spins relax with T1ρ during the
spin-lock time (which is similar to T2) and hence the ROESY cannot be used for
larger molecules due to rapid relaxation during the mixing time. In contrast,
relaxation during the mixing time of a NOESY takes place with T1 which is
long, even for large molecules.
1.6 Why only zero- and double-quantum transitions contribute to the NOE
In a two-spin system the transitions α
2
->β
2
give rise to the spin-2 resonance
and the transitions α
1
->β
1
to the spin-1 resonance:
Let us assume that we irradiate the resonance of spin 2:
FIGURE 12. Axis of rotation during NOE (left) and ROE(right) buildup.
FIGURE 13.
x
y
B
o
=z
x
y
B
o
=z
B
1
=y
NOE
ROE
α
1
α
2
α
1
β
2
β
1
α
2
β
1
β
2
α
1
α
2
α
1
β
2
β
1
α
2
β
1
β
2
spin-2 tr ansi ti ons
spi n-1 tr ansi ti ons
LECTURE COURSE: NMR SPECTROSCOPY
Seventh Chapter: The NOE Effect Pg.95
Due to the irradiation the populations of the two states α
2
and β
2
are equal-
ized. Now, this system tries to go back to the equilibrium state. It can do so via
zero-, single- or double quantum transitions::
However, because irradiation of the spin 2 resonances still keeps the popula-
tions of the two α
2
and β
2
states equal leading to β
1
α
2
= β
1
β
2
and

α
1
α
2
= α
1
β
2
.
As can be seen from the following figure, only zero- and double-quantum tran-
sitions lead to a change of the intensity of the spin-1 transition (and hence to a
NOE effect):
FIGURE 14.
FIGURE 15.
3/3
3/ 6
3/ 6
6/ 6
α
1
α
2
α
1
β
2
β
1
α
2
β
1
β
2
2/ 4
4/ 8
4/8
α
1
α
2
α
1
β
2
β
1
α
2
β
1
β
2
2/ 4
αα αβ αα βα
αβ αα βα αα
α α β β β β α α
α β β α β α α β
-→ - -→ -
-→ - -→ -
-→ - -→ -
-→ - -→ -
or or
or SQC
or DQC
or ZQC
( )
( )
( )
1 2 1 2 1 2 1 2
1 2 1 2 1 2 1 2
W
o
W
1
W
1
W
2
zero-quantu m
tr ansiti ons
single-quantum
tr ansi ti ons
double-quantu m
tr ansiti ons
LECTURE COURSE: NMR SPECTROSCOPY
Seventh Chapter: The NOE Effect Pg.96
1.7 Practical tips for NOE measurements:
• the conditions for measurement must be very stable
• (as always true for methods that rely on differences). Especially, the temperature
must be stable. For the same reason, never use spinning for NOE
measurements! Measuring over night or on weekends is preferred because of
less traffic in the building. Optimize the lock power, adjust lock power just
below saturation to give a strong lock signal.
• the mixing time has to be optimized for the molecule size, do not use too long
mixing times in order to avoid spin diffusion.
• Avoid paramagnetic impurities!
• If very small effects should be measured, remove oxygen (degas the sample;
oxygen is a biradical).
• The sample should be concentrated enough but not too concentrated (little lock
signal).
• For observation of NOE's between methyl groups and other protons, irradiate
the methyl group, because relaxation of methyl protons is mainly governed by
the other methyl protons.
• Pay attention to the choice of the solvent. Use a solvent, that gives an intense
lock signal (DMSO, acetone, rather not CDCl
3
or D
2
O if possible), because
than the lock is more stable. D
2
O also has a large temperature shift of the
solvent line, so that the lines easily shift when the temperature is not stable.
• If the NOE is very small, that means if the tumbling time is such that the NOE is
near to the zero-crossing, going from a non-viscous solvent (acetone) to a
viscous solvent (DMSO) or measuring at lower temperatures may increase the
size of the NOE dramatically (note that at low temperatures the danger is high
that the temperature is not stable).
• Use sufficiently long relaxation delays (3-5 times T
1
).
FIGURE 16. Populations after zero-quantum (left), single-quantum (middle) and double-quantum (right)
transitions and subsequent restoring due to spin-2 irradiation.
3/ 3
3/ 6
3/ 6
6/ 6
2.5/
2.5
3.5/
3.5
3.5/
5.5
3.5/
5.5
5.5/
5.5
2.5/
6.5
2.5/
6.5
6.5/
6.5
LECTURE COURSE: NMR SPECTROSCOPY
Seventh Chapter: The NOE Effect Pg.97

Excurs I: The use of NOE data for structure calculation of peptides and proteins
NMR data can be used for structure calculations of proteins up to about 30 kDa presently. The method
uses the fact, that the strength of the NOE between protons depends on their distance. The volume of
the NOESY crosspeaks may be expressed as
The distance between the two protons may vary due to flexibility of the polypeptide chain. The NOE
depends also on the correlation time.
The first step in the procedure is to assign the NOESY spectrum completely. Peaks are then integrated.
The next step is to convert NOESY peak volumes into distances, a process known as “calibration”:
These distances will then serve as upper limits to constrain distances between different protons in the
calculated structures. Due to the flexible nature of polypeptides no lower limits are used (except for dis-
ulfide bridges). The inherently different flexibility of different classes of protons in peptides (e.g. com-
pare backbone atoms with methyl-groups) is taken into account by applying different calibration
functions for them. Backbone atoms are calibrated with a r
-6
dependence, whereas for NOE’s involving
methyl protons a r
-4
calibration will be applied. The constant k can be determined on the basis of known
distances (e.g. the distance of sequential amide protons in helices is about 3Å). Additionally, scalar vic-
inal coupling constants may be used to constrain torsional angles.
To calculate structures from these upper limits and torsion angle constraints distance geometry algo-
rithms have been used in the past. However, nowadays restrained molecular dynamics calculations are
performed. In these calculations, Newtons equation of motion is integrated:
Thereby, the coordinate of a atom at time t can be calculated from the force acting on it. The force itself
is expressed as the negative gradient of the potential energy. The potential energy function is the normal
force field expanded by an additional term reflecting the nmr constraints:
During a structure calculation a number of (typ. 20-50) randomly chosen conformers is energy mini-
mized under a simulated annealing protocol. The NMR constrains in the potential energy function will
force the molecule to adopt a structure that is compatible with the NMR data. After the calculation the
20-50 separately energy-minimized conformers is superimposed for best fit. A resulting narrow struc-
ture bundle indicates good convergence of the calculation. This is mostly the case when enough NOE’s
are present to define the structure. Flexible parts of the molecule usually will display less NOE’s are
less well defined in the resulting structure bundle.
V r
6 –
〈 〉 f τ
c
( ) =
V k d
4 6 –
⁄ =
m
i
t
2
2
d
d
r
i
t ( ) F
i
t ( ) = i 1 … N , , =
U
pot
U
forcefield
U
NMR
+ =
LECTURE COURSE: NMR SPECTROSCOPY
Seventh Chapter: The NOE Effect Pg.98
Excurs II: Use of dipolar couplings to yield structural constraints:
Orientations of structural elements with respect to each other (e.g. the relative orientation of two helices)
is difficult to describe from NMR experiments. Usually, only a few NOE’s between the two elements
may be used. Any misassignment will lead to a large errors in the relative orientation.
Relatively newly, residual dipolar couplings have been used for describe orientations of parts of the mol-
ecule that are separated by a large distance. Dipolar interactions between two protons depend on the ori-
entation of the vecto connecting the two atoms with respect to the external field
Usually, these dipolar interactions are averaged to zero in solution due to rapid tumbling and therefore
rapid changes in the angle f. However, Bax et al. could show, that it is possible to partially orient macro-
molecules in solutions containing bicelles (disk-shaped vesicles). These pospholipid vesicles orient in
the magnetic field such that the membrane normal is perpendicular to the direction of the magnetic field.
Marcomolecules in these solution are then partially oriented by simple steric reasons:
The dipolar coupling can be calculated as:
where c
A
and c
B
are the axial and rhombic alignment tensors and S the order parameter. Thereby, a refer-
ence frame for all protons (the alignment frame) is available and orientations are possible with respect to
that frame irrespective of the number of intervening bonds. Thereby, parts of molecules that are far apart
may be oriented relative to each other.
Bo
φ
1H
15N
r
B
r
loc
=
− µ φ ( cos ) 3 1
2
3
B
0
φ
χ
A
δ
dip
S B
0
2
( )γ
A
γ
B
r
AB
3 –
χ
A
3
2
φ 1 – ( ) cos ( ) χ
B
2
sin φ 2φ cos ( ) + [ ] • ∝
LECTURE COURSE: NMR SPECTROSCOPY
Fifth Chapter: Chemical and conformational exchange Pg.99
1. CHEMICAL OR CONFORMATIONAL EXCHANGE:
Let us assume that ethanol binds to a target molecule and dissociates of again:
In such a situation the methyl group of ethanol has different chemical environments in
the bound and in the free state. In the bound state it is under the influence of the ring
current shift of a tyrosine residue for example, and therefore the chemical shift will be
low-field shifted. In the free state the anisotropy effect due to the ring current shift has
disappeared. Depending on the exchange kinetics the methyl signal will appear as a
single or as two resonances with more or less exchange broadening. Three different
states can be distinguished:
• Slow exchange (two sets of resonances with reasonable sharp lines)
• Fast exchange (a single, sharp line positioned somewhere between the two
lines)
• Intermediate exchange (a single, very broad (or invisible) line.)
The underlying exchange process may also be chemical exchange, such as exchange
between the hydroxyl protons and protons from dissolved water. Alternatively it could
be conformational exchange. All these processes are frequently encountered in NMR.
1.1 Two-site exchange:
Let as assume the following reaction:
The lifetime of state A is:
and of state B is
FIGURE 1. Binding of methanol to protein in the vicinity of a aromatic residue leads to strong shift of methyl signal
C
H3
-
C
H2
-
O
H
CH
3
-CH
2
-OH
+
Me=1 ppm
Me=-0.5 ppm
A B
B A
k
k
+

- → -
- → -
1
1
τ
A
k =
+
1
1
/
τ
B
k =

1
1
/
LECTURE COURSE: NMR SPECTROSCOPY
Fifth Chapter: Chemical and conformational exchange Pg.100
The NMR parameters that characterize both states are a) the chemical shift, b) scalar
spin,spin couplings and c) the linewidth (transverse relaxation time). The NMR time-
scale is defined by the relation of the exchange rate with respect to the magnitude of
the accompanying change in the corresponding NMR parameter:
The exchange time scale is defined by the separation of the two signals relative to the
exchange rate. The ratio is influenced by
• increasing temperature accelerates the exchange reaction and therefore pushes
the system into the fast exchange regime
• increasing static fields increases the line separation and therefore drives the
system into the slow exchange regime.
The effect of chemical or conformational exchange on the chemical shift is shown
below. Therein, a signal in the fast exchange regime is into the slow exchange regime
pushed by decreasing the temperature or increasing the field strength. At the coales-
cence temperature a very broad line with a plateau is observed.
Exchange rates
Time scale slow intermediate fast
Chemical Shift k << δ
A
- δ
B
k = δ
A
- δ
B
k >> δ
A
- δ
B
Scalar Coupling k << J
A
- J
B
k= J
A
- J
B
k >> J
A
- J
B
Transverse Relax. k << 1/ T
2A
-1/ T
2B
k = 1/ T
2A
-1/ T
2B
k >> 1/ T
2A
-1/ T
2B
FIGURE 2. Appearance of two-site exchange spectra in dependence on the exchange rate. Top: Fast exchange,
Bottom: Slow exchange, 2nd row from top: coalescence.
fast exchange
slow exchange
coalescence
B
o
T
e
m
p
LECTURE COURSE: NMR SPECTROSCOPY
Fifth Chapter: Chemical and conformational exchange Pg.101
1.1.1 Fast exchange:
At fast exchange a single resonance line is observed at the frequency
It is obvious from the equation above that the resonance position of the averaged signal
may not be simply the arithmetic mean of the resonance positions of the two slow-
exchanging lines because the population of the two states has to be taken into account
(usually a unknown).
The exchange reaction causes an additional contribution to the linewidth of
Thereby, the faster the reaction or the smaller the frequency difference (provided that a
single line is observed, fast exchange regime) the narrower the line. Such an increase in
reaction rate can be accomplished via a temperature increase and a decrease in fre-
quency separation by lowering the magnitude of the static field.
A similar situation exist with averaging of couplings:
An important example for averaging of couplings is found for hydroxyl pro-
tons of alcohols that exchange with solvent water protons. In the figure below,
the boxed proton feels the vicinal proton to be in the α-state (left side).
Through chemical exchange that proton is substituted by a proton that comes
from water and is in the β-state. When the exchange is slow both lines of the
doublet are visible but for the fast case only the average singlet will be
observed. This mechanism has been termed self-decoupling and is the reason
why OH protons in alcohols usually appear as (broad) singlets:
FIGURE 3. Exchange of the hydroxyl proton with a proton from water may lead to a change in the spin state of the
OH proton. If this process is fast, only the avaraged line at the center without splitting due to coupling is visible.
δ δ δ
ave A A A B
p p = + − ( ) 1
∆ν
π ν ν
1 2
2
1
1
2
/
=
− ( )
+
A B
k
J p J p J
ave A A A B
= + − ( ) 1
CD
3
----C O
D
H
H O H
H
+
CD
3
----C O
D
H
H
H O
H
+
LECTURE COURSE: NMR SPECTROSCOPY
Fifth Chapter: Chemical and conformational exchange Pg.102
1.1.2 The slow exchange limit:
When two separate signals are observed the additional contribution to the linewidth
due to exchange is:
Hence, temperature decrease or field increase will lead to a sharpening of the lines.
A typical example where both situations (slow and fast exchange) are simultaneously
encountered is exchange of amide and hydroxyl protons of peptides with solvent in
aqueous solution. At slightly acidic pH the amide protons give separate, sharp lines and
the exchange rate is on the order of 1-10 sec
-1
. In contrast, exchange between hydroxyl
and water protons is so fast that the hydroxyl protons coincide with the water chemical
shift and cannot be observed separately.
1.1.3 The intermediate case:
The lineshape of the signals changes upon passing from the slow into the fast exchange
regime. A detailed investigation shows that it may be described as:
The following figure shows calculated lineshapes for two signals 10 Hz apart (top
trace) depending on the lifetime (which is the inverse of the reaction rate) or for two
signals with 0.1sec lifetime depending on the frequency separation (given in Hz):
At coalescence the lineshape is characterized by a flat top. The corresponding lifetime
at coalescence is given by
Usually, one is not interested in recording spectra with exchange-broadened lines. You
FIGURE 4. Top: Two lines, 10 Hz separated appear as a singlet, if the lifetime of the separate states is short (0.01s)
or as two separate lines, when the lifetime is long (1s). Bottom: Calculated for a lifetime of 0.1 s with varying
frequency separations (1-15 Hz).
∆ν
π
=
+
k
1
g
A A X
A X A A X
ν
τ ν ν
ν ν ν π τ ν ν ν ν
( ) =
− ( )
− + ( )
|
|
|
|
|
|
+ −
( )

( )
2
1
2
2
2
2 2
2 2
0.2
0.01 0.05 0.085 0.1
0.3 0.5 1.0
5 4
3 1 6 10
15
∆∆∆ ∆δδδ δ=10 Hz
τττ τ
a
∆∆∆ ∆δδδ δ
τττ τ
a
=0.1 sec
τ
π
ν ν
A
c
A X
= −
2
( )
LECTURE COURSE: NMR SPECTROSCOPY
Fifth Chapter: Chemical and conformational exchange Pg.103
can find out the proper measuring conditions by
• recording spectra at higher temperature
==>when the lines get sharper heat until the lines are sufficiently narrow. When
that temperature cannot be reached (sample not heat-stable or solvent is
volatile), record spectra at lower field.
• when the lines get broader upon temperature rise cool down or proceed at higher
field.
If you cannot get spectra with reasonable sharp lines following this procedure it is
worth trying to change the solvent which may have a dramatic effect.
The following figure shows 1D spectra (expansions) of chinin recorded at 300 and 600
MHz. It is obvious that by going from 600 to 300 MHz a considerable improvement in
linewidths has been achieved. Often cyclic compounds display such dynamic behavior
due to slow conformational interconversions.
1.2 Investigation of exchange processes:
1.2.1 EXSY spectroscopy:
The 2D EXSY experiment is in principle identical to the NOESY pulse experiment.
However, the mixing time is usually chosen shorter, since the exchange rate is normally
much faster than the cross-relaxation rate. Crosspeaks are due to exchanging (chemical
FIGURE 5. Appearance of spectra displaying exchange phenomena in dependence on the static field
2.0 2.5 3.0 3.5 ppm
600MHz,300K
600MHz,320K
300MHz,295K
300MHz,310K
LECTURE COURSE: NMR SPECTROSCOPY
Fifth Chapter: Chemical and conformational exchange Pg.104
or conformational) protons.
1.2.2 Saturation transfer:
When a signal is inverted (e.g. by application of a selective 180 deg. pulse), it recovers
with T1. However, other protons that are in exchange with the inverted or saturated res-
onance become also saturated or inverted:
In this figure resonance B has been inverted. The signal is shown after successive time
increments for resonance A (left) or resonance B (right). The top trace shows the case
without exchange between A and B (no effect on A). The middle trace displays a dra-
matic effect on resonance A when exchange occurs. However, the longitudinal relax-
FIGURE 6. 2D EXSY:left: Spectrum overview, right:Expansion
FIGURE 7. Single-line spectra of resonance A (left) and B (right)after various time increments. Top: No exchange.
Middle:Exchange, infinitely long T1, bottom: exchange, T1=1s.
ppm
2 3 4 5 6 7 ppm
2
4
6
ppm
7.0 7.5 ppm
7.0
7.5
A
B
A
B
k
ex
=0
k
ex
=0,T1=inf.
k
ex
=0,T1=1s
LECTURE COURSE: NMR SPECTROSCOPY
Fifth Chapter: Chemical and conformational exchange Pg.105
ation time T1 has been assumed to be infinity. In the lower trace the signal A recovers
due to T1 relaxation.
A frequent case where saturation transfer occurs is through presaturation of solvent.
Hydroxyl protons that exchange with the solvent (e.g. water) vanish from the spectrum
or largely decrease in intensity when solvent presaturation is applied. From the rate of
recovery the exchange rate can be calculated (provided T1 has been determined
before).
1.3 Determination of activation parameters:
The observation of dynamic processes in NMR spectra allows to calculate parameters
for the activation parameters of the exchange process. The activation energy for such a
process can be calculated according to the Arhenius equation
in which K
#
is the equilibrium constant for the formation of the activated complex.
This is related to the reaction rate k via
Theory of thermodynamics states that
so that
therein,
κ is the transmission coefficient (usually 1)
k the Boltzmann constant
T the temperature
h the Planck constant
A plot of ln(k/T) versus 1/T yields a line with slope (- ∆ H
#
/R) and intercept (23.76 + -
∆ S
#
/R).
In close agreement the activation energy can be estimated as
E RT K
a
= − ln
#
k
kT
h
e
G RT
=

κ

#
/
∆ ∆ ∆ G H T S
# # #
= −
k
kT
h
e e
H RT S R
=

κ
∆ ∆
# #
/ /
∆G RT
T
Jmol
c
c
A B
#
. ln [ ] ≈ +

(
\
|
\
!
|

22 96
1
ν ν
LECTURE COURSE: NMR SPECTROSCOPY
Eighth Chapter: The product operator formalism Pg.106
1. THE PRODUCT OPERATOR FORMALISM (POF) FOR DESCRIPTION OF
PULSE-EXPERIMENTS:
Simple one-dimensional NMR experiments may be conveniently described
using the pictorial vector description. However, in order to more deeply
understand two-dimensional NMR or multiple-quantum spectroscopy the
product operator formalism is required.
The following events may happen during or after application of radiofre-
quency (RF) pulses:
• chemical shift precession
• evolution of scalar or dipolar couplings
• change of the state of the spins due to additional RF fields
• relaxation
In the following we will see how these events are described in the product
operator formalism (POF). Truly speaking, the POF may only be used to
describe spin systems in the weak coupling case (no second order effects). In the
POF, precession and scalar coupling can be calculated in arbitrary order. If not
necessary, relaxation effects are usually ignored but can be added easily.
In the POF calculations are done on magnetization, which is the ensemble
property formed by adding up all dipole moments from separate spin, rather
than on individual spins. The transformations due to shift precession or cou-
pling are described as rotations in three-dimensional cartesian space:
We have seen before that a continous rotation can be described as an harmonic
oscillation and presents a superpostion of a sine- and cosine modulated func-
tion.
FIGURE 1. Rotation of a vector after a time 1/4ν
x
y
x
y
∆t=1/4ν
LECTURE COURSE: NMR SPECTROSCOPY
Eighth Chapter: The product operator formalism Pg.107
In the example given above a property aligned along the x-axis rotates about
the z-axis onto the y-axis with a frequency ω. In the POF this will read as fol-
lows:
The symbol over the arrow indicates the axis and the frequency of rotation.
1.1 RF pulses:
Application of a RF field along the x-axis will rotate z-magnetization in the z,y
plane:
It is described as:
Of particular importance are rotations of 90 and 180 degrees. The frequency of
rotation depends on the strength of the field. The field strength is expressed in
terms of the frequency, which is the inverse of the time required for a 360˚ rota-
tion.
The sign convention for rotations is that applying a field along the x-axis will
rotate in clockwise sense (Field along y: Look down the y-axis and rotate clock-
wise, e.g. from z to -x)
1.2 Chemical shift precession:
After application of a 90˚ RF pulse spins are correlated in phase leading to a
bunching of phases. The resulting magnetization vector rotates in the x,y plane
FIGURE 2. Rotation of z-magnetization about the -x-axis. This will achieve the following conversions: z -> y -> -z
-> -y -> z
A A t A t
x
A
x y
z
ω
ω ω - → -- ( ) + ( ) cos sin
B
o
=z
y
x
B
o
=z
y
x
B
o
=z
y
x
I I I
z
I
z y
x
β
β β - → - − cos sin
γ
π
B
PW
1
2
1
360
=
° ( )
LECTURE COURSE: NMR SPECTROSCOPY
Eighth Chapter: The product operator formalism Pg.108
(transverse plane) with a certain angular velocity. After a certain amount of
time it will have rotated by a specific angle depending on its offset frequency.
Note that chemical shift evolution can only take place for transverse magnetiza-
tion!
Shift precession amounts to a rotation of the magnetization vector in the trans-
verse plane.
The precession frequency is
ω=2πδ
where δ is the offset from the transmitter frequency.
1.3 Scalar spin,spin coupling:
Due to the fermi-contact interaction spins that have a neigbouring spin in the
α-state are of slightly different energy than those that have them in the β-state.
Having different energies means that these two different kinds of spins precess
with different frequencies because frequency and energy are related to each
other. In a reference coordinate system that rotates with the center frequency of
a dublet the downfield component will rotate with a frequency of +J/ 2 in one
direction and the other component with –J/ 2 in the other direction. When both
vectors are 180˚ out of phase the resulting term is
This state is of particular importance for coherence transfer which is the crucial
step for polarization transfer experiments (e.g. INEPT, DEPT) or the mixing
FIGURE 3. Left: Equilibrium state. Middle: State after 90 deg RF pulse. Right: Shift precession in the
transverse plane.
B
o
=z
y
x
B
o
=z
y
x
x
y
I I t I t
x
I
x y
z
ω
ω ω - → -- ( ) + ( ) cos sin
I S I S I S S I S
y y y y z
α β α β
+ − = − = ( ) ( ) 2 2
LECTURE COURSE: NMR SPECTROSCOPY
Eighth Chapter: The product operator formalism Pg.109
steps in 2D experiments. In the product operator formalism the transformation
under scalar spin,spin coupling is described as:
A number of operators are frequently encountered during the calculations:
• I
x
, I
y
transverse x (or y) magnetization
• I
z
longitudinal magnetization
• 2I
x
S
z
antiphase I magnetization (or I magnetization antiphase w.r. to S)
• 2I
z
S
z
longitudinal two-spin order
• 2I
x
S
y
two-spin coherence (mixture of zero-and double-quantum
• coherence, multiple-quantum coherence)
Two operators that are both transverse cannot evolve scalar couplings amongst each
other!
FIGURE 4. Vectorial representation of the states due to evolution of scalar couplings
I I Jt I S Jt I
x
J I S
x y z
J I S
x
z z z z
π π
π π - → -- + - → -- − cos( ) sin( ) 2
x
y
x
y
x
y
I((( (S
ααα α
))) )
x
y
I(S
βββ β
))) )
2IyS
z
x
y
-I
x
I
x
Σ=
The product operators can be directly related to the appearance of signals. Scalar
couplings do occur as in-phase splitting when the operator is
I
x
cos(πJ
I,S
t)
or as anti-phase splitting if the operator is
2I
y
S
z
sin( πJ
I,S
t)
The operator 2IySzsin(πJ
I,S
t)cos(πJ
I,X
t)
leads to the following signal:
J
I,S
J
I,S
J
I,S
J
I,X
LECTURE COURSE: NMR SPECTROSCOPY
Eighth Chapter: The product operator formalism Pg.110
1.4 A simple one-dimensional NMR experiment:
A conventional one-dimensional experiment for recording proton spectra
looks like the following:
(In the following, 90 degree pulses are drawn as narrow, shaded rectangles, 180
deg. pulses as black, wider rectangles). A 90 degree RF pulse applied along the
x-axis is immediately followed by data acquisition. Using the POF we can sum-
marize the events for a 2-spin system. Usually, one starts with pure z-magneti-
zation. The events are subsequently calculated:
• 90 degree x-pulse:
• chemical shift evolution
• scalar spin,spin coupling:
Note that chemical shift and scalar coupling may be calculated in arbitrary
order (but not the effect of pulses and shift/ coupling!).
During a pulse sequence all possible interactions have to be calculated which
may lead to a huge number of terms. However, only a limited number of terms
lead to detectable magnetization at the end and only those are of interest
because they contribute to the signal:
• directly observable are only single operators that contain transverse terms
(I
x
,I
y
, S
x
, S
y
..)
• antiphase magnetization (such as I
y
S
z
) evolves into in-phase magnetization
(-I
x
) if the corresponding coupling is resolved
• terms that contain more than one transverse operator are not observable and
hence can be ignored in the end of the sequence
FIGURE 5. A simple 1D experiment consisting of a 90° pulse followed by sampling of the FID.
x
I I
z
I
y
x
90( )
- → -- −
− - → - − + I I t I t
y
tI
y x
z
ω
ω ω cos( ) sin( )
− + - → --- − +
+ +
I t I t I t Jt I S t Jt
I t Jt I S t Jt
y x
Jt I S
y x z
x y z
z z
cos( ) sin( ) cos( )cos( ) cos( )sin( )
sin( )cos( ) sin( )sin( )
( )
ω ω ω π ω π
ω π ω π
π
2
2
LECTURE COURSE: NMR SPECTROSCOPY
Eighth Chapter: The product operator formalism Pg.111
Certain terms that are of negligible intensity can be removed during the calcu-
lation thereby largely reducing the number of operators.
1.5 The effect of 180 degree pulses:
180 degree pulses are often used to
• refocus chemical shift
• refocus scalar couplings
When a 180 degree pulse is placed in the centre of a delay it will refocus chemi-
cal shift evolution of transverse magnetization (see left part of the following
figure).
180 degree pulses will flip spins from the α- into the β-state:
The effect of 180 degree pulses are summarized in the following figure:
We have seen before that the two dublet lines arising from spin,spin coupling
are due to different spins that have neighbouring spins in either the α- or the β-
state. When this coupling partner is flipped from the α- into the β-state or vice
versa the coupling evolution will be refocussed after a time that is the same as
the one during which the system was allowed to evolve the coupling. In this
context it is very important to distinguish two cases:
• both spins I and S experience the 180 degree pulse which is usually the case if
they are both protons (homonuclear case)
• only one of the two nuclei experiences the pulse which is the case for a
1
H,
13
C
pair.
In the first case both spins are simultaneously flipped and no overall effect
occurs. Only the latter leads to decoupling.
FIGURE 6. Effects of 180° pulse(s) on shift precession and evolution of scalar couplings
I I I I
α β β α 180 180
- → - - → -
∆∆∆ ∆
∆∆∆ ∆
I
S
∆∆∆ ∆ ∆∆∆ ∆ ∆∆ ∆ ∆ ∆∆∆ ∆
refocussing of I shift
refocussing of I,S coupling
I shift evolution
refocussing of I,S coupling
refocussing of I shift
evolution of I,S coupling
LECTURE COURSE: NMR SPECTROSCOPY
Eighth Chapter: The product operator formalism Pg.112
The refocussing of chemical shift can be described with the product operator
formalism easily in the following way:
and for evolution of heteronuclear scalar couplings:
However, homonuclear scalar couplings are not refocussed since both spins
are flipped:
1.6 Coherence transfer:
Coherence transfer is the crucial step of
• polarization transfer experiments (INEPT,DEPT)
• multidimensional correlation experiments
In order to transfer coherence couplings must have been evolved. Antiphase I-
spin coherence is then transferred into antiphase S-spin coherence:
When the time t during which scalar coupling takes place is exactly equal to
(2J)
-1
sin(πJt)=sin(π/2) and I-spin coherence has quantitatively been trans-
formed into antiphase coherence. Note that in the homonuclear case steps [2]
and [3] can be achieved with a single pulse. It is also important to realize that
step [2] requires the phase of the 90˚ pulse to be x. Otherwise, multiple-quan-
tum coherences are formed:
Through the coherence transfer step transverse I-spin magnetization has been
transformed into transverse S-spin magnetization.
I I I I
x y
x
y x
∆ ∆
- → - - → -- − - → -
180( )
I I S I S I
x y z
S
y z x
∆ ∆
- → - - → -- − - → - 2 2
180( )
( )
I I S I S I
x y z
I S
y z x
∆ ∆
- → - - → -- − − - → - − 2 2
180( , )
( )( )
I I Jt I S Jt
I S I S a
I S I S a
x
Jt I S
x y z
y z
I
z z
z z
S
z y
z z
x
x
( )
( )
( )
cos( ) sin( )
π
π π - → --- + [ ]
- → -- [ ]
- → -- − [ ]
°
°
2 1
2 2 2
2 2 3
90
90
2 2 2
2 2 3
90
90
I S I S b
I S I S b
y z
I
y z
y z
S
y y
y
x
°
°
- → -- [ ]
- → -- − [ ]
( )
( )
LECTURE COURSE: NMR SPECTROSCOPY
Eighth Chapter: The product operator formalism Pg.113
1.7 Polarization transfer:
Polarization transfer is a common building block in pulse-experiments to
increase sensitivity. The sensitivity is proportional to the number of spins that
can undergo a certain transition. We have seen before that this number
depends on the relative populations of α- and β-states according to the Boltz-
mann distribution. The higher the energy gap between the two states the larger
the population difference and hence the stronger the intensity of the signal.
13
C spectra are much lower in sensitivity because
• the natural abundance of
13
C is 1/100 of that of protons
• the energy separation between α- and β-states is γ(
13
C)/ γ(
1
H)=1/ 4
and hence the number of transitions are much lower.
Polarization transfer is aimed at bringing the population difference from pro-
tons to carbons and hence increasing the sensitivity.
The prototype for the PT sequences is the INEPT experiment:
Using the POF the INEPT sequence can be summarized in the following way:
In principle, one might be tempted to remove the 180˚ pulses on the proton and
carbon channel. However, chemical shift evolution would then take place for
protons transforming
The second term would be transformed into non-observable multiple-quan-
tum coherence through the cascade of the following two 90˚ pulses:
Therefore, we need a 180˚ pulse in the center of the proton delay. However, this
FIGURE 7. Pulse sequence for INEPT experiment (
1
H,
13
C polarization transfer).
1
H
13
C
x y
1/4 J(C,H) 1/4 J(C,H)
I I I S I S I S
z
I
y
J I S
x z
I
z z
S
z y
x
y
x
90
1
2
90
90
2 2 2
°
°
°
- → -- − - → --- - → -- − - → --
( ) ( , )
( )
( )
2 2 2 I S I S t I S t
x z
tI
x z y z
z
ω
ω ω - → - + cos( ) sin( )
2 2
90
I S t I S t
y z
I S
y y
y x
sin( ) sin( )
( , )
ω ω
°
- → --- −
LECTURE COURSE: NMR SPECTROSCOPY
Eighth Chapter: The product operator formalism Pg.114
proton pulse would unfortunately decouple protons from carbons, and we do
need the coupling evolution for the transfer. Hence, a 180˚ pulse on the carbon
channel is additionally required in order to avoid decoupling.
The important achievement of the PT sequence is that the amount of antiphase
carbon magnetization is proportional to the starting I-spin magnetization
which is I
z
=(I
α
-I
β
). At the end of the PT sequence the amount of transverse
cabon magnetization depends on the Boltzmann distribution of the proton lev-
els which is much more favourable!
An experiment that has become even more popular than INEPT is the DEPT
sequence. The DEPT experiment allows to record
13
C spectra that are edited
with respect to the number of protons that are directly bonded to the carbons.
Non-proton bearing carbons are missing in DEPT spectra. The editing is
achieved through suitable choice of the length of the final proton pulse in the
sequence. For β=135 degrees, methyl and methin carbons are positive and
methylen carbons are negative. For β =90 degrees, only CH carbons are con-
tained. The dependence of the signal intensity for CH
3
,CH
2
and CH carbons
on the proton pulse length is shown below:
Since CH and CH
3
carbons can usually be distinguished on the base of their
chemical shifts, a DEPT-135 experiment is mostly sufficient but should be com-
plemented by a DEPT-90 in case of ambiguities for CH
3
/ CH. The DEPT
sequence relies on uniform
1
J (CH) coupling constants, a large variation of cou-
pling constants leads to cross-talk in the edited spectra.
Of course, a double PT 2D experiment can be used to increase the senitivity
FIGURE 8. Transfer amplitudes for CH
n
(n=1-3) groups in DEPT experiments in dependency of the flip angle of
the final proton pulse.
45° 90° 135°
CH
2
CH
CH
3
LECTURE COURSE: NMR SPECTROSCOPY
Eighth Chapter: The product operator formalism Pg.115
further such as the HSQC experiment:
FIGURE 9. Comparison of sensitivity of carbon-detection experiments without PT ( inverse-gated
13
C,
13
C{
1
H}), and with PT (INEPT) and with
1
H detection (2*PT, HSQC)








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LECTURE COURSE: NMR SPECTROSCOPY
Eighth Chapter: The product operator formalism Pg.116
Excurs: The foundations of the product operator formalism:
The wavefunction for the state of a one-spin system can be formulated as
in which the coefficients c
1
and c
2
indicate to which extent the spin occupies the α or
β state. |ψ> is called a state vector and |α> and |β> are the basis states. The basis
states are orthogonal vectors in Hilbert space (a N-dimensional vector space for a
system with N basis states with some special properties). The scalar product of the
two vectors is defined as:
which is the square of the length (norm) of the state vector ψ:
The length of the state vector |ψ> is interpreted as the probability of finding the spin
system in a particular state. The scalar product of two different states is
in which the component printed in bold indicates the amount of interference between
the two states. <ψ'|ψ’’> is interpreted as the probability to go from state ψ’ to ψ’’.
We can now define an operator A that transforms ψ'' into ψ’:
Often in NMR these transformations are rotations in 3D space that do not change the
length of the vectors (so-called “unitary transformations”) and the operator is a rota-
tion matrix. Assume we have two state vectors, one describing the inital state of the
spin system, one describing the final state:
ψ | 〉 c
1
α | 〉 c
2
β | 〉 + =
ψ ψ 〈 | 〉
2
c
1
2
c
2
2
+ =
|α>
|β>
|ψ>
C
1
C
2
|α>
|β>
|ψ>
|ψ>

“ |ψ
tot
>
φ
ψ' ψ'' 〈 | 〉 ψ' ψ' 〈 | 〉 ψ'' ψ'' 〈 | 〉 2 ψ' ψ' 〈 | 〉
1 2 ⁄⁄⁄ ⁄
ψψψ ψ'' ψψψ ψ'' 〈 | 〉
1 2 ⁄⁄⁄ ⁄
φφφ φ cos + + =
ψψψ ψ'' | 〉 A ψψψ ψ' | 〉 =
ψ
i
| 〉 c
1i
α | 〉 c
2i
β | 〉
ψ
f
| 〉 c
1f
α | 〉 c
2f
β | 〉 + =
+ =
LECTURE COURSE: NMR SPECTROSCOPY
Eighth Chapter: The product operator formalism Pg.117
To mathematically express the transformation we can arrange the state vector of the
initial state as a column vector and the state vector ofthe final state in form of a row
vector and write:
The time-evolution of the density matrix is described by the Liouville-van Neumann
Equation:
in which H is the Hamiltonian describing the interaction (coupling, shift etc.). The
commutator
The time evolution of the spin states can be expressed as:
The basic rotations are:
c
1i
c
2i
A
11
A
12
A
21
A
22
c
1f
c
2f
=
t d
d
σ t ( ) i H σ t
0
( ) , [ ] – =
i H σ t
0
( ) , [ ] – i Hσ σH – ( ) – =
C C
if C C
or
C C i C C
if C C
q
C
q
q p
q
C
q q p
q p
p
p
- → -
[ ]
=
- → - +
[ ]
[ ]

,
cos , sin
,
0
0
θ θ
Ix
2IySz
2IzSz
z
x
y
z
LECTURE COURSE: NMR SPECTROSCOPY
Ninth Chapter: 2 dimensional NMR experiments Pg.118
1. TWO-DIMENSIONAL NMR SPECTROSCOPY:
The introduction of two-dimensional NMR spectroscopy has largely increased
the potential power of NMR as a tool for structure elucidation of larger mole-
cules. It's main advantages are:
• dispersion of signals into two orthogonal dimensions and
• identification of correlations
The 2-dimensional NMR experiment is characterized by the introduction of a
second frequency axis, which allows to correlate frequencies:
The two frequency domains are called the direct (F2) and the indirect (F1) fre-
quency domains. Frequencies of signals in the direct dimension have been
directly detected in the receiver coil, those of the indirect dimension were
derived from the second Fourier transform of the amplitude modulated sig-
nals.
Homonuclear 2D spectra are usually symmetric about the diagonal. The diago-
nal contains the one-dimensional spectrum. Off-diagonal peaks at the fre-
quency F2=Ω
A
, F1=Ω
B
are called cross-peaks, and they indicate the spins with
frequencies Ω
A
and Ω
B
are correlated.
Two-dimensional experiments can be classified into certain groups:
FIGURE 1. Appearance of homonuclear COSY spectrum with crosspeaks (C) and diagonalpeaks(D).
F1
F2

ΑΑΑ Α

ΑΑΑ Α

ΒΒΒ Β

ΒΒΒ Β
C
C D
D
LECTURE COURSE: NMR SPECTROSCOPY
Ninth Chapter: 2 dimensional NMR experiments Pg.119
• homonuclear correlated spectra that contain frequencies of similar nuclei in
both dimensions (e.g.
1
H,
1
H COSY, INADEQUATE)
• heteronuclear correlated spectra that contain frequencies of different nuclei
(e.g.
1
H,
13
C correlations) in different frequency dimensions.
Similarly experiments can be subdivided into
• shift-correlated 2D experiments, that link two spins via their chemical shifts
(F2: chemical shift of spin A, F1: chemical shift of spin B for crosspeaks)
• J-resolved experiments, that separate chemical shift and J-coupling information
in two orthogonal frequency dimensions (F2: chemical shift of spin A, F1: J-
coupling of spin A).
Each pulse-sequence for a 2D experiment contains the basic elements
For the example of the F1=Ω
A
, F2=Ω
B
crosspeak the spin A is excited in the
preparation period, then chemical shift labelled during the evolution period.
Subsequently, magnetization is transferred from spin A to spin B in the mixing
period. Finally, magnetization is detected on the spin B.
The 2D data matrix is recorded by performing a set of 1D spectra, in which a
delay called the evolution time is systematically incremented. The signal of the
spin B, which is detected, varies in amplitude from experiment to experiment,
FIGURE 2. Building blocks of 2D experiment.
(Excitation of spin A)
(Chemical Shift labelling of spin A)
(Coherence transfer to spin B)
Detection
Preparation
Evolution
Mixing
LECTURE COURSE: NMR SPECTROSCOPY
Ninth Chapter: 2 dimensional NMR experiments Pg.120
and the modulation frequency of the signal intensity corresponds to the chem-
ical shift of the spin A. The 2D spectrum is yielded from a two-dimensional
Fourier transformation:
1.0.1 The preparation period:
In principle, the preparation period serves to create transverse coherences. In a
proton,proton correlation experiment like the COSY, it is a simple 90 degree
pulse for excitation. Some experiments that correlate carbon (or nitrogen) with
proton frequencies use an initial INEPT polarization transfer from proton to
carbon to increase sensitivity (dramatically). These experiments are the so-
FIGURE 3. Translation of the amplitude modulation of a signal into the frequency of the indirect
dimension through Fourier transform.
LECTURE COURSE: NMR SPECTROSCOPY
Ninth Chapter: 2 dimensional NMR experiments Pg.121
called inverse-detection experiments. In the product operator formalism the
preparation is described as
or in the case of inverse-detection experiments:
1.0.2 The evolution period:
The evolution period is the pulse sequence element that enables frequency
labelling in the indirect dimension. Usually, the corresponding time is called t1
in contrast to t2 in the direct detection dimension. Fourier transform of the t1-
domain data yields the frequency dimension F1 and t2 corresponds to F2. In
order to understand how frequency labelling in the indirect dimension is
achieved, it is useful to recall how the frequencies in the direct dimension are
sampled. The signal is sampled in discontinuous mode:
Consecutive data points are separated by a dwell time. The length of the dwell
time is related to the spectral width (SW, the width of the spectrum in Hz):
The resolution depends on the number of data points sampled and the spectral
width (neglecting relaxation effects).
Frequency labelling in the indirect dimension is done analogously. However,
FIGURE 4. Sampling of data in the direct dimension.
I I
z
x
y
90°
- → -- −
I I I S I S
z
I
y
I S
x z
I S
z x
x y y 90 180
90
2 2
° − −
°
- → -- − - → ---- - → ---
( ) ( , )
( , )
∆ ∆
AQ
DW
(td =16)
dw
SW
=
1
LECTURE COURSE: NMR SPECTROSCOPY
Ninth Chapter: 2 dimensional NMR experiments Pg.122
data points are taken in separate 1D experiments. During a 2D experiment a
series of 1D spectra is recorded which differ by the fact that the evolution time
has been systematically incremented from experiment to experiment. This is
schematically shown in the figure on the following page for signals that lead to
diagonal peaks (no magnetization transfer during the sequence). The signal
precesses during t1. Depending on the length of the evolution period more or
less of the magnetization will be turned onto the z-axis thereby modulating the
intensity of the remaining signal. Since the evolution time is incremented sys-
tematically in successive FIDs the frequency in the indirect dimension is sam-
pled analogously to the one of the direct dimension.
In the product operator formalism frequency labelling is described as:
1.0.3 The mixing period:
The many 2D experiments differ in the way they transfer magnetization from
spin A to spin B, that means in the construction of the mixing process. Possible
transfer-sequences may rely on
• scalar couplings (COSY, TOCSY-type experiments)
• dipolar couplings (NOESY/ROESY type experiments)
• chemical exchanges (EXSY type experiments)
In product operator language the mixing for the COSY-type experiments is
described as
Herein, transverse I-spin coherence is transferred into transverse S-spin coher-
ence. Operators like I
x
S
z
evolve with the chemical shift of the spin I whereas
operators like I
z
S
x
evolve with the shift of spin S. Because the mixing step sepa-
rates the t1 and t2 periods, such a transfer step will lead to signals correspond-
ing to crosspeaks after 2D FT. However, depending on the chemical shift
evolution of the I spin in t1, the term just before the transfer step can also be
I
y
S
z
(instead of I
x
S
z
). Application of a 90° pulse with phase y on the I and S spin
will give I
y
S
x
, a mixture of double- and zero-quantum coherence, which cannot
I I t I t
x
t
x I y I
1
1 1
- → - ( ) + ( ) cos sin ω ω
2 2
90
I S I S
x z
I S
z x
y y
°
- → ---
( , )
LECTURE COURSE: NMR SPECTROSCOPY
Ninth Chapter: 2 dimensional NMR experiments Pg.123
be observed.
FIGURE 5. COSY-type mixing in the vector model
P
R
E
P
A
R
A
T
I
O
N
M
I
X
I
N
G
D
E
T
E
C
T
I
O
N
E
V
O
L
U
T
I
O
N
F
T
(
F
2
)
1
3
4
5
F
I
D

i
n

F
2
F
I
D

i
n

F
1
2
LECTURE COURSE: NMR SPECTROSCOPY
Ninth Chapter: 2 dimensional NMR experiments Pg.124
The TOCSY transfer is different in the way that in-phase magnetization is trans-
ferred at twice the rate:
For the NOESY mixing the description is
Some of the more advanced triple-resonance experiments mixing includes
magnetization relay via many nuclei of possibly different nature.
1.0.4 The detection period:
The detection period simply comprises acquisition of the FID with or without
heteronuclear decoupling.
1.0.5 Hetcor and inverse-detection experiments:
The heteronuclear correlation experiments (Hetcor, HMQC, etc.) are in princi-
ple of the COSY-type. However, the mixing pulse must be applied for both
kinds of nuclei (
1
H and
13
C) separately. Inverse detection experiments include
an additional INEPT-type proton-heteronucleus polarization transfer step.
Thereby, the sensitivity is increased according to
In addition, faster pulsing is possible since the proton T1's are usually much
FIGURE 6. Magnetization flow for coherence transfer between spins A and B.
PREPARATION
α
β
MIXING
α
β
α
β
EVOLUTION
Spin A
Spin B
I S
x x
" " 180°
- → --
I S
z z
m
τ
- → - − ( )
Int
ex
∝ γ γ
det
/ 3 2
LECTURE COURSE: NMR SPECTROSCOPY
Ninth Chapter: 2 dimensional NMR experiments Pg.125
shorter than those of
13
C or
15
N.
The prototype inverse detection experiment, the HSQC (heteronuclear single-
quantum coherence) experiment is shown below. The experiment contains two
polarization transfer (INEPT) steps.
1.1 Phasecycling:
A large problem in [
13
C,
1
H] spectra is suppression of protons bound to
12
C.
FIGURE 7. Building blocks of homonuclear (left) and heteronuclear (middle and right) experiments.
FIGURE 8. Building block of HSQC experiment.
homonuclear
Excitation
Evolution
Mixing
Detection
heteronuclear
(
1
H detection mode)
PT-Transfer back to proton
Preparation
Evolution
Detection
PT-Transfer to X-nucleus
Preparation
Evolution
Detection
PT-Transfer to X-nucleus
heteronuclear
(X detection mode)
∆ ∆
t
1


DEC
Preparation
INEPT Evolution
Re-INEPT
Detection
H
z
H
y
2H
x
C
z
2H
z
C
y
2H
z
C
y
cos(ω
C
t
1
)
2H
y
C
z
cos(ω
C
t
1
) 2H
y
C
z
cos(ω
C
t
1
)cos(ω
H
t
2
)
1
H
13
C
LECTURE COURSE: NMR SPECTROSCOPY
Ninth Chapter: 2 dimensional NMR experiments Pg.126
This is achieved through phase-cycling of the first 90˚ pulse on the carbon
channel. The satellite lines (those proton lines, which belong to the
1
H-
13
C
fragment) are inverted when the phase of the first 90˚ carbon pulse is shifted by
180˚. When the receiver phase is inverted too addition of the two FIDs leads to
cancellation of the central proton line (the one that belongs to the
1
H-
12
C frag-
ment). Clearly, unstable measuring conditions will cause incomplete cancella-
tion, and the centre signal will show up as t
1
noise:
1.2 An Alternative: Pulsed Field Gradients
By applying pulsed field gradients the homogeneity of the external magnetic
field is destroyed and spins with the same chemical shift are defocused to a
degree which depends on their location in the probe. Usually the NMR spec-
troscopist spends a considerable amount of time to have maximum field
homogeneity over the sample volume. By detuning the z-shim starting from a
perfectly shimmed magnet a linear B
0
gradient is created along the sample axis
so that spins in the upper part of the tube have higher frequencies than those at
the bottom. If such a gradient would be applied during signal acquisition a
broad signal corresponding to a wide range of frequencies would be observed
instead of a sharp line. The crucial point is that the amount of dephasing is pro-
portional to the coherence level of the spins at the time the gradient is applied.
Double-quantum coherences are dephased by twice the amount than single
FIGURE 9. Coherence selection in HSQC spectra and origin of t
1
noise in HSQC spectra and
1
J
C,H
φ
1
=x
φ
Rec
=x
FID1
φ
1
=-x
φ
Rec
=-x
FID2
Σ


1
H
13
C
∆ ∆
t1
HSQC
DEC
φ
LECTURE COURSE: NMR SPECTROSCOPY
Ninth Chapter: 2 dimensional NMR experiments Pg.127
quantum coherences, zero-quantum coherences are not dephased at all. Usu-
ally at least two gradients are applied during the sequence. In the double-
quantum filtered COSY experiment a gradient is applied during the time dou-
ble-quantum coherence is exists. At the end of the sequence (when single-
quantum coherences are existent) a read-out gradient is used of half the strength
to refocus the gradient. The 2:1 ratio of the two gradients ensures that the
desired coherence pathway has been selected:
The change of the lamor frequency is proportional to the order of coherence p
i
,
the gyromagnetic ratio γ
i
of the spin, the strength and sign of the applied linear
field gradient pulse G
z
, it's coordinate Z
i
in the probe and the duration τ:
By applying a gradient of the same strength but opposite sign, coherences of
the same order are rephased again. Alternatively, proton coherences can be
labelled using a pulsed field gradient, and, after magnetization transfer to car-
bon-13, carbon single quantum coherences can be refocused by a gradient of
opposite sign and appropriate strength. Since dephasing and rephasing is done
within the same scan, no further scans are needed provided the S/ N is suffi-
cient. Because spectra are recorded without addition/ subtraction of scans.
FIGURE 10. Effect of field gradients on isochronous spins at different locations in the probe. (A)
DQF-COSY sequence with application of gradients (B); (C) selected coherence transfer
pathway; (D) vector representation of isochronous spins during the experiment.
t1
BO
Gz
Gz
BO
A
B
C
D
∆υ γ τ ∝ p Z G
i i i z
LECTURE COURSE: NMR SPECTROSCOPY
Ninth Chapter: 2 dimensional NMR experiments Pg.128
instrumental instabilities are less pronounced and therefore two-dimensional
experiments tend to contain much less t
1
noise. Furthermore, solvent suppres-
sion is superior, no saturation transfer due to fast exchanging protons is possi-
ble and signals with identical chemical shifts to those of the solvent can easily
be observed. Whenever dephasing and rephasing intervals are separated by a
long delay, as is the case for NOESY or TOCSY experiments, diffusion leads to
a significant loss of magnetization. A second disadvantage stems from the rela-
tively long duration of gradients and the time required for re-establishing the
homogenous field.
1.3 Hybrid 2D techniques:
Hybrid experiments are very similar to three-dimensional NMR experiments,
in which the second time variable is kept constant. Classical examples are
HMQC/ HSQC experiments coupled with a subsequent TOCSY or NOESY
(ROESY) transfer step. In these experiment, not only the direct (
1
J(C,H) connec-
tivities are observed, but also connectivies to other (mostly vicinal) protons of
the proton spin system. This is especially helpful in case of overlap of proton
frequencies. One obviously useful field for application lies in oligosaccharide
NMR. For example, a [
13
C,
1
H] HSQC-TOCSY experiment correlates not only
the anomeric proton with its carbon but also with the neighboring protons.
Obviously, the sensitivity of the correlations is reduced when compared with
the HSQC experiment. For small molecules with small NOE enhancements, a
HSQC-NOESY on natural abundance is very insensitive. In case of isotropic
enrichment, such a HSQC-NOESY can be a rather sensitive experiment for
larger molecules (those that give strong NOE enhancements).When the mixing
time is limited (e.g. 12ms) coherence transfer in HSQC-TOCSY experiments is
limited to neighboring protons. Then, information from such an experiment is
similar to that of COSY spectra but signals are dispersed along the carbon
dimension making it a very valuable experiments for (oligo)saccharides or
peptides.
LECTURE COURSE: NMR SPECTROSCOPY
Ninth Chapter: 2 dimensional NMR experiments Pg.129
1.4 Overview of 2D experiments:
homonuclear shift correlated spectra
via scalar couplings
(DQF)-COSY vicinal/ geminal protons correlated
COSYlr COSY optimized for small couplings (long-range
couplings)
INADEQUATEmostly used for carbon, carbon correlation experiments
for nat. abundance samples.
relay-COSY COSY with additional relay step
TOCSY experiment with multiple proton relay, for long
mixing times all protons within the same spinsystem are
correlated
double-quantum spectroscopy
identification of degenerate methylene protons
TQF-COSY identification of glycine residues in peptides
X-filtered Exp. normal 2D experiment, but only spins that have an
additional coupling to a heteronucleus are displayed
via dipolar couplings
NOESY correlation via dipolar interaction
ROESY rotating frame analogue of the NOESY
exchange spectroscopy
EXSY correlates exchanging protons (chemical and conforma
tional exchange)
heteronuclear shift correlated spectra via scalar coupling
FIGURE 11. Building blocks of HSQC-TOCSY experiment and information content of the spectra.


1
H
13
C
∆ ∆
t1
H
C
HSQC-TOCSY
DEC
spinlock
spinlock
t1
TOCSY
∆ ∆
1
H
13
C
∆ ∆
t1
H
C
HSQC
DEC

Α
F
1
=
1
3
C

Α
F2=
1
H
HSQC
C
A
-C
B
-C
C
H H
H
F2=
1
H
F
1
=
1
3
C

Α

Β Ω
C

Α
HSQC-TOCSY
C
A
-C
B
-C
C
H H H
LECTURE COURSE: NMR SPECTROSCOPY
Ninth Chapter: 2 dimensional NMR experiments Pg.130
13
C detected experiments
hetcor correlation of directly bonded protons and carbons
COLOC proton, carbon correlation via long- range (
2
J,
3
J) couplings
1
H detected experiments
HMQC,HSQCcorrelation of directly bonded protons and carbons
HMBC proton, carbon correlation via long- range (
2
J,
3
J) couplings
the following experiments include an additional TOCSY/ NOESY/ COSY
transfer step:
H(S)MQC-TOCSY
H(S)MQC-NOESY
H(S)MQC-COSY
via dipolar couplings
HOESY correlation via heteronuclear dipolar interaction (via
NOE)
Experiments for measurement of J-couplings
homonuclear j-resolved experiments
heteronuclear j-resolved experiments
ECOSY
HMQC-J
1.5 Original references for 2D experiments:
COSY:
Aue, W. P.; Batholdi, E.; Ernst, R. R. J. Chem. Phys. 1976, 64, 2229-2246.
COSY-DQF:
Piantini, U.; Sørensen, O. W.; Ernst, R. R. J. Am. Chem. Soc. 1982, 104, 6800-6801.
Rance, M.; Sørensen, O. W.; Bodenhausen, G.; Wagner, G.; Ernst, R. R.;
Wüthrich, K. Biochem. Biophys. Res. Commun. 1983, 117, 479-485.
COSY-LR:
Bax, A.; Freeman, R. J. Magn. Reson. 1981, 44, 542-561.
E.COSY:
Griesinger, C.; Sørensen, O. W.; Ernst, R. R. J. Chem. Phys. 1986, 85, 6837.
LECTURE COURSE: NMR SPECTROSCOPY
Ninth Chapter: 2 dimensional NMR experiments Pg.131
TOCSY:
Bax, A.; Davis, D. G. J. Magn. Reson. 1985, 65, 355-360.
Braunschweiler, L.; Ernst, R. R. J. Magn. Reson. 1983, 53, 521-528.
NOESY:
Jeener, J.; Meier, B. H.; Bachmann, P.; Ernst, R. R. J. Chem. Phys. 1979, 71, 4546.
Wüthrich, K. NMR of Proteins and Nucleic Acids; 1st ed.; Wiley: New York, 1986.
INADEQUATE:
Bax, A.; Freeman, R.; Kempsell, S. P. J. Am. Chem. Soc. 1980, 102, 4849-4851.
Bax, A.; Freeman, R.; Frenkiel, T. A. J. Am. Chem. Soc. 1981, 103, 2102-2104.
ROESY:
Bothner-By, A. A.; Stephens, R. L.; Lee, J.-M. J. Am. Chem. Soc. 1984, 106, 811-
813.
Bax, A.; Davis, D. G. J. Magn. Reson. 1985, 63, 207-213.
HMQC:
Bax, A.; Griffey, R. H.; Hawkins, B. L. J. Magn. Reson. 1983, 55, 301-315.
Müller, L. J. Am. Chem. Soc. 1979, 101, 4481-4484.
HSQC:
Bodenhausen, G.; Ruben, D. J. Chem. Phys. Lett. 1980, 69, 185-189.
HMBC:
Bax, A.; Summers, M. J. Am. Chem. Soc. 1986, 108, 2093-2094.
LECTURE COURSE: NMR SPECTROSCOPY
Eleventh Chapter: Solid-State NMR spectroscopy Pg.132
1. SOLID STATE NMR SPECTROSCOPY:
Solid-State NMR spectroscopy is increasingly being used for a number of reasons:
• it allows to probe properties in the solid state (-> material sciences)
• it enables to structural characterize insoluble compounds such as (synthetic)
polymers
• it has per se no moleccular size limit and therefore is of advantage when looking
at very large systems (e.g. membrane-proteins embedded in bilayers)
However, a number of additional interactions do appear that complicate spectra to an
extend that they become essentially useless unless they are experimentally removed.
Although similar interactions are also encountered in the liquid state they are averaged
out due to rapid tumbling of the molecules. We will therefore shortly review basic
interactions that are important for solid-state NMR applications. The typical range of
various interactions is listed in the table below (from Ref. Williamson et al.):
1.1 The chemical shift
It has been recognized very early on that the resonance frequency of a nucleus is influ-
enced by the surrounding electrons. For nuclei with non-spherical electron distribu-
tions the shielding effect depends on the orientation of the electron cloud with respect
to the static field B
0
. For non-sp
3
hybridized carbons the anisotropy can be as large as
150 ppm and even larger values are encountered for heavier elements.
interaction nuclei typical magnitude
chemical-shift range
1
H ~15 ppm
13
C ~200 ppm
15
N ~200 ppm
anisotropy of CSA
1
H < 10 ppm
13
C < 140 ppm
15
N < 200 ppm
one-bond dipolar coupling
1
H-
13
C ~22 kHz
1
H-
15
N ~20 kHz
13
C-
13
C 4.5 kHz
13
C-
15
N 2 kHz
15
N-
15
N < 1 kHz
LECTURE COURSE: NMR SPECTROSCOPY
Eleventh Chapter: Solid-State NMR spectroscopy Pg.133
The chemical shift tensor σσσ σ denotes the tensor required to transform the B
o
field vector
into the vector B
eff
representing the effective field:
By suitable choice of the coordinate system the chemical shift tensor only contains the
diagonal elements σ
xx
, σ
yy
and σ
zz
. Such a system is called the principal axis system
(PAS). For the shielding tensor the z-axis points into the direction of the largest elec-
tron density. The trace of the tensor (by convention σ
zz
≥ σ
xx
≥ σ
yy
)
denotes the isotropic value of the shielding tensor, is rotationally invariant and corre-
sponds to the shift observed in isotropic solution.
The parameter δ is the anisotropy and reflects the deviation from cubic symmetry
and η the asymmetry, which reflects the deviation from axial symmetry:
The orientation of the shift tensor is depicted below:
Beff
x
Beff
y
Beff
z
σ
xx
σ
xy
σ
xz
σ
yx
σ
yy
σ
yz
σ
zx
σ
zy
σ
zz
0
0
B
0
⊗ =
σ σ
xx
σ
yy
σ
zz
+ + ( ) 3 ⁄ =
δ σ
zz
σ
3
---

\ !
( \
=
η σ
xx
σ
yy
+ ( ) δ ⁄ =
z
y
x
O
C
13
13
C
O
O
C
13
B
o
B
o
B
o
z
x
y
x
y
δ
δ
zz
δ
yy
δ
xx
z
LECTURE COURSE: NMR SPECTROSCOPY
Eleventh Chapter: Solid-State NMR spectroscopy Pg.134
In a non-crystalline powder sample the nuclei are randomly oriented and the observed
chemical shift tensor corresponds to the statistical average over all possible orienta-
tions. The powder lineshapes are characteristic for the magnitudes of anisotropy δ and
asymmetry η. The examples depicted at the left correspond to axially symmetric ligand
fields. For nuclei with cubic symmetry (e.g.
15
N in NH
4
) even sharper signals are
observed:
Note that in crystalline material orientations are non-random! Sample preparation is
very important for solid-state NMR applications:
The figure above displays
13
C and
15
N MAS spectra of antamanide from a) lyophilized
powder, b) and c) microcrystalline powder obtained by evaporation of solvent with dif-
ferent protocols (see ref. Williamson et al.). Structural disorder or inhomogeneity rep-
resents a major issue in solid-state NMR applications!
σ
yy
σ
zz
σ
xx
σ
xx
σ
yy σ
yy
σ
yy
σ
yy
σ
yy
σ
zz
σ
zz
σ
zz
σ
zz σ
zz
σ
xx
σ
xx
δ < 0
δ > 0
η=0
η=0
η=0.5
η=0.5 η=1
η=1
10 20 30 40 50 60 70
(a)
(b)
(c)
13
C
15
N
ppm 100 110 120 130 140
LECTURE COURSE: NMR SPECTROSCOPY
Eleventh Chapter: Solid-State NMR spectroscopy Pg.135
1.2 Dipolar couplings:
Dipolar couplings depend on the
orientation of the vector that connects the
two nuclei relative to the static field, on the
separating distance and on the
gyromagnetic ratios of the two nuclei
involved.
For dipolar couplings the Hamiltonian is:
is homonuclear couplings
H
IS
= -d (3 cos
2
β-1) I
Z
S
Z
; d = (µ
o
/4π) hγ
I
γ
S
/r
IS
3
and for hetereonuclear couplings:
H
II
= -d/2 (3 cos
2
β-1) 3I
1Z
I
2Z
- I
1
I
2
; d = (µ
o
/4π) hγ
I
2
/r
II
3
In solution, dipolar couplings are averaged to zero due to rapid (rotational) motion of
the molecules (but give rise to the important relaxation phenomena). In the solid state
no such rapid rotation exists and hence the dipolar couplings give rise to line splittings
which can easily exceed 10 kHz in magnitude. Because these dipolar couplings can be
so large they are not only observed between direct neighboring nuclei but also longer-
reaching interactions are encountered. Note that dipolar couplings have recently also
been introduced into solution NMR by the use of weakly aligned systems for recording
residual dipolar couplings (RDCs).
The scalar (J) couplings do not fundamentally differ from the quantities observed in
isotropic (solution) phase. However, it is very important to remove heteronuclear scalar
couplings to increase resolution (and hence sensitivity) in the spectra. RF irradiation
schemes similar to those used to remove heteronuclear couplings in solution are
applied. For spins with I≥1, quadrupolar couplings exist, but those will not be
described here.
Solid-state NMR experiments fundamentally suffer from the additional dipolar interac-
tions and from the chemical shift anisotropy. Due to the increased line-widths sensitiv-
ity is an important issue in SS-NMR, and the quantities required are usually much
larger than for solution-state NMR.
β
µ
A
µ
B
r
LECTURE COURSE: NMR SPECTROSCOPY
Eleventh Chapter: Solid-State NMR spectroscopy Pg.136
1.3 Magic Angle Spinning (MAS)
The effects from chemical shift anisotropy and dipolar couplings lead to excessively
broad lines. To a large extend this line-broadening can be removed by spinning the
sample about the magic angle 54.74° (magic-angle spinning, MAS). For this angle the
second-order legendre polynomial (3cos
2
β-1)/2, which describes the angular depen-
dence in both the dipolar coupling as well as in the chemical shift Hamiltonians, van-
ishes. In MAS, the sample is placed in a cylindrical rotor which is rapidly spun (up to
30-50 kHz) about an axis that is tilted by 54° away from the direction of the static field.
The tremendous line-narrowing effects due to MAS are displayed in the powder
13
C
spectra of
13
C,
15
N labeled glycine below (from ref. Williamson et al.):
At the lower frequencies spinning sidebands fall into the spectral regions of interest.
Upon rising the spinning frequencies those bands occur outside the spectral region. The
broad lines observed in the powder spectrum collapse into rather sharp lines which
occur at the position of the isotropic chemical shift.
Unfortunately spinning the samples at high frequencies does heat up the sample (tens
of degrees!) and the heating effect must be removed by cooling the rotor appropriately.
1.4 Sensitivity Enhancement:
Solution-state NMR normally utilizes proton detection experiments due to the high
gyromagnetic ratio of protons which makes this nucleus very sensitive. In SS-NMR
applications proton detection is less favorable due to the large number of homonuclear
dipolar interactions, and mostly carbon detection is used instead. Carbon, however, is a
much less sensitive nucleus. Polarization-transfer techniques are therefore employed to
270 240 210 180 150 120 90 60 30 0 -30
δ [ppm]
θ
m
54.7° =
ω
r
B
0
static
5 kHz
10 kHz
LECTURE COURSE: NMR SPECTROSCOPY
Eleventh Chapter: Solid-State NMR spectroscopy Pg.137
transfer the much more favorable proton polarization onto the carbon nuclei.
1
Nowadays Hartmann-Hahn Cross Polarization (CP) is used. In this technique B
1
fields
are simultaneously applied to the proton and carbon spins such that the precession fre-
quencies of the two spins are approximately equal (γ
Η
B
H
≈ γ
C
B
C
). Thereby, carbon
polarization can be enhanced by up to a factor of four (γ
Η

C
), and advantage can be
taken from the much shorter T1 of protons (higher repetition rate).
The extend by which magnetization can be transferred to the heteronucleus by Hart-
mann-Hahn cross polarization transfer depends on the mixing time, but also on the dis-
tance between the nuclei. This technique may therefore be use to derive distance
information of pairs of nuclei:
1.5 Recoupling techniques in SS-NMR:
Whereas magic-angle spinning (MAS) leads to significant line-narrowing in 1D spec-
tra, the removed interactions need to be re-introduced in order to yield distance or
(dihedral) angle information. One way to yield information on spin-interactions is to
spin the sample more slowly and extract spin interaction parameters from spinning
side-band amplitudes.
A more commonly technique used nowadays is to re-introduce spin-interactions by
recoupling techniques. The basic idea behind recoupling techniques is that the averag-
ing of spatial-dependent parameter such as dipolar couplings or chemical shift aniso-
tropy under MAS can be removed if RF pulses are applied in rotor-synchronized fash-
1. Due to the four-fold higher γ of protons the energy difference between α and β-states is much larger
for protons and hence the population difference is also larger.
I
S
1.5
2.5
3.5
Mixing time [ms]
3 6
Distance in Å
Fig. Left: Pulse sequence for hetero CP. Right: Signal buildup curves for various dura-
tions of mixing time and distances. A two spin system has been used and interactions
other than dipolar couplings are neglected.
LECTURE COURSE: NMR SPECTROSCOPY
Eleventh Chapter: Solid-State NMR spectroscopy Pg.138
ion:
For heteronuclear dipolar recoupling rotational echo double resonance (REDOR) has
been used. Herein,
15
N,
13
C dipolar couplings are re-introduced during the mixing time
leading to dephasing of the signal by the dipolar coupling. Note that during signal
acquisition the dipolar couplings are removed by MAS so that narrow signals are sam-
pled:
ω
r
ω
r
1/ 2ω
r
1/ 2ω
r
( )
n
0
0
S
H
IS
H
IS
S=
0 1 2 3 4 5 6 7 8
1
H
13
C
15
N
0 1 2 3 4 5 6
0
0.2
0.4
0.6
0.8
1
dephasing period (ms)
decoupling
t/τ
r
∆S
S
0
-------
a)
b)
π/2
Fig.: a) REDOR pulse sequence for recording
13
C,
15
N dipolar couplings. b) Relative signal intensity
change against mixing time for a one-bond dipolar coupling (from ref. Williamson et al.)
CP
CP
LECTURE COURSE: NMR SPECTROSCOPY
Eleventh Chapter: Solid-State NMR spectroscopy Pg.139
Usually, a reference spectrum without the rotor-synchronized
15
N pulses is additionally
acquired and the intensities in both spectra are compared. The curves reflecting signal
intensity versus time depend on the magnitude of the heteronuclear dipolar couplings,
which in turn depend on their distance, and precise values for these can be extracted
from the data by comparison of the experimental data with simulations. Note that
strictly speaking the RF pulses are applied to the spin-part of the dipolar Hamiltonian
(I
z
S
z
) whereas MAS only influences the spatial part (3cos
2
θ-1).
Homonuclear recoupling techniques have also been developed. Whereas its implemen-
tation is similar to the heteronuclear variants in principle, it is complicated by the fact
that the spin-interactions need to be reintroduced selectively. (A transformation I
z
S
z
-->
I
z
(-S
z
) is easily accomplished for a heteronuclear pair of spin by just applying a 180°
pulse to the S spin but usually difficult for homonuclear spin pairs which will both be
flipped unless the 180° pulse is selective). Selectivity in the homonuclear recoupling
techniques is achieved by adjusting a chosen property such as the spinning (rotor) fre-
quency to the zero- or double-quantum frequencies of the spin pair of interest (ω
zq
= ω
a
-
ω
b
, ω
dq

a
plus ω
b
). For example, in rotational resonance (R
2
) the rotor frequency is
set to a submultiple of the chemical shift difference. The dipolar coupling is then mea-
sured in form of an exchange experiment: A resonance A is selectively inverted and the
exchange between the two sites is monitored:
Cross
Polarization
DANTE
Inversion
τ
m
π/2 π/2
π/2
Decoupling
a) b)
c)
δ (ppm)
70 60 50 40 30 20 10
ω
r
= 3411Hz
0 10 20 30
τ
m
(ms)
0.0
0.2
0.4
0.6
0.8
1.0
<
I
1
z
-
I
2
z
>
0ms
5ms
10ms
15ms
20ms
25ms
Fig.: a) Pulse sequence for a rotational resonance experiment. b) 1D spectra taken at various set-
ting of the mixing time τ
m
. Note the change in signal amplitude of the signal at 53 ppm after the
resonance at 20 ppm has been selectively inverted. c) Change in intensity vs. mixing time.
CP
CP
LECTURE COURSE: NMR SPECTROSCOPY
Eleventh Chapter: Solid-State NMR spectroscopy Pg.140
The condition for rotational resonance is fulfilled only for one (or at least a very few)
spin pairs.
Other techniques use double quantum transitions (HORROR, DREAM, DRAMA etc.),
and largely utilize rotor-synchronized RF pulses.
J-couplings are much smaller and transfer times are much longer. In addition, all other
interactions need to be sufficiently eliminated. Therefore, methods relying on scalar
couplings are rather new and their use has been motivated by the fact that they allow to
trace along covalent networks (spin systems) leaving less ambiguity in the assignment
process.
1.6 SS-NMR of oriented samples:
SS-NMR spectra are complicated by the fact that
all kind of orientations with respect to the external
field are possible. Some classes of molecules, e.g.
crystalline materials or peptides/proteins embedded
in phospholipid membranes, however, can be ori-
ented either by deposition on glass plates or by
magnetic alignment. Assuming a unique associa-
tion with the membrane the nuclei therefore do not
adopt all possible orientations with respect to the
external field. This effect is demonstrated in the fig-
ure displayed on the left: The spectra were
recorded on
15
N fd coat protein on unoriented lipid
bilayers (C), magnetically-oriented lipid bicelles (A), and lipid bilayers oriented on
glass plates (B) (taken from ref. Opella et al.).
It has recently become clear that the orientation of helices with respect to the mem-
brane normal may be probed from a combination of chemical shift and the one-bond
dipolar
15
N,
1
H couplings in the so-called PISEMA spectra:
LECTURE COURSE: NMR SPECTROSCOPY
Eleventh Chapter: Solid-State NMR spectroscopy Pg.141
.
The figure above displays the chemical shift of a
15
N amide resonance in dependence of
the orientation of the helix. In addition, the orientation of axes in the PAS are depicted.
Peaks belonging to amide moieties from a single helix in PISEMA spectra occur at
characteristic places, and the exact position and pattern can be rather easily related to
the angle the helix makes with the membrane surface (and hence with the field):
In the figure above, A) displays peak position for various angles the helix makes with
Β
ο
220 140
σ{15Ν}
C
O
C
C
H
σ
11
σ
22
σ
33
Ν
α−1
α
θ=17
ο
A
C
B
β
LECTURE COURSE: NMR SPECTROSCOPY
Eleventh Chapter: Solid-State NMR spectroscopy Pg.142
the membrane-normal. In B) experimental peak positions are assigned to the helical
wheel positions for
15
N labeled AchR M2 peptide (a channel-forming peptide) in ori-
ented bilayers and compared to a simulated PISEMA spectrum calculated for a tilt
angle of 12°. In C) typical PISEMA spectra are displayed for the AchR M2 peptide
(right) together with the HSQC spectrum recorded in solution on the DPC-micelle-
bound form.
1.7 Labeling strategies for solid-state NMR applications:
The easiest (and most often used) remedy to reduce the vast number of interactions in
the solid state is the use of selectively labeled material, in which NMR active isotopes
(
13
C,
15
N) are only introduced at specific sites.
Whereas selectively labeled small molecules usually need to be synthesized from suit-
able precursors, peptides can be subsequently labeled at cysteine sites with methylio-
dide. Alternatively, biosynthetic routes to prepare alternatingly labeled peptides (only
every second position is labeled) or selectively at methyl position have been developed.
Assigning polypeptides from uniformly labeled material still presents a major chal-
lenge. For that purpose a series of triple-resonance experiments relying on transfer
pathways similar to those used for solution studies have been suggested.
Another common problem is that signals are inherently broadened due to the structural
disordered in non-crystalline solids. Hence, microcystalline solids are usually required
and much attention needs to be paid to sample preparation.
References:
• P.T.F. Williamson, M. Ernst, B.H. Meier: MAS Solid-State NMR of
Isotropically Enriched Biological Samples in BioNMR in Drug Research, Ed.
O. Zerbe, Wiley 2003.
• R. Tycko, Biomolecular Solid State NMR: Advances in Structural Methodology
and Applications to Peptide and Protein Fibrils, Annu. Rev. Phys. Chem. (2001),
52, 575-606.
• D.D. Laws, H.-M. Bitter, A. Jerschow, Solid-State Spectroscopic Methods in
Chemistry, Angew. Chem. (2002), 41, 3096-3129.
• S.J. Opella, C. Ma, F.M. Marassi, Nuclear Magnetic Resonance of Membrane-
Associated Peptides and Proteins, Meth. Enzymol. (2001), 339, 285-313.

LECTURE COURSE: NMR SPECTROSCOPY
Scalar couplings: 60 Direct couplings (1J): 62 Geminal couplings (2J): 63 Vicinal couplings (3J): 63 Long-range couplings: 65 Couplings involving p electrons: 65 The number of lines due to scalar spin,spin couplings: 65 Strong coupling: 67 68 T1 relaxation: 68 T2 relaxation: 69 The mechanisms of relaxation: 70 Other relaxation mechanisms: 72 Chemical shift anisotropy (CSA): 72 Scalar relaxation: 72 Quadrupolar relaxation: 73 Spin-rotation relaxation: 73 Interaction with unpaired electrons: 73 The motional properties: 73 The dependence of the relaxation rates on the fluctuating fields in x,y or z direction: 75 Excurs: The Lipari-Szabo model for motions: 77 The nature of the transitions: 78 Measurement of relaxation times: 80

Relaxation:

The Nuclear Overhauser Effect (NOE): 84 Experiments to measure NOEs: 86 The steady-state NOE: 87 Extreme narrowing (hmax >0): 87 Spin-diffusion (hmax <0): 88 The transient NOE: 89 The state of the spin system and the density matrix: 90 The sign of the NOE: 92 Why only zero- and double-quantum transitions contribute to the NOE 94 Practical tips for NOE measurements: 96 Chemical or conformational exchange: Two-site exchange: Fast exchange: The slow exchange limit: The intermediate case: Investigation of exchange processes: EXSY spectroscopy: Saturation transfer: Determination of activation parameters: 99 99 101 102 102 103 103 104 105

2

LECTURE COURSE: NMR SPECTROSCOPY
The product operator formalism (POF) for description of pulse-experiments: 106 RF pulses: 107 Chemical shift precession: 107 Scalar spin,spin coupling: 108 A simple one-dimensional NMR experiment: 110 The effect of 180 degree pulses: 111 Coherence transfer: 112 Polarization transfer: 113 Two-Dimensional NMR Spectroscopy: The preparation period: The evolution period: The mixing period: The detection period: Hetcor and inverse-detection experiments: Phasecycling: An Alternative: Pulsed Field Gradients Hybrid 2D techniques: Overview of 2D experiments: Original references for 2D experiments: Solid State NMR Spectroscopy: The chemical shift Dipolar couplings: Magic Angle Spinning (MAS) Sensitivity Enhancement: Recoupling techniques in SS-NMR: SS-NMR of oriented samples: Labeling strategies for solid-state NMR applications: 118 120 121 122 124 124 125 126 128 129 130 132 132 135 136 136 137 140 142

3

determination of optical purity Biopolymers up to about 20-30 kDa determination of the 3D solution structure provided the primary sequence is known! investigation of the interaction of molecules (complexes) investigation of the dynamics of proteins 1H. liquid-state) determination of the dynamics in the solid-state Imaging techniques spin tomography "In vivo" NMR spectroscopy distribution of metabolites in the body 4 .trans isomerism.LECTURE COURSE: NMR SPECTROSCOPY APPLICATION FIELDS OF NMR SPECTROSCOPY High-resolution NMR spectroscopy Analytics "small" molecules determination of the covalent structure determination of the purity Elucidation of the 3D structure "small" molecules determination of the stereochemistry: cis.1H or 15N relaxation measurements oder 1H.15N NOE measurements Determination of the kinetics of reactions Solid-state NMR spectroscopy insoluble compounds (synthetic polymers) very large compounds (requires specific labels) determination of the structure in the solid-state (vs. 13C 1H.

The torque that acts to rotate the needle may be described as ∂J = r×F ∂t in which J is defined as the angular momentum which is the equivalent for rotaT = First Chapter: Physical Basis of the NMR Experiment Pg.LECTURE COURSE: NMR SPECTROSCOPY 1. Such a circular current builds up a magnetic moment µ whose direction is perpendicular to the plane of the conducting loop.5 . In the following we will look at a mechanical equivalent represented by a compass needle that aligns within the gravitational field: N φ FIGURE 2. The faster the charge travels the stronger is the induced magnetic field. when placed into a magnetic field. When such a compass needle is turned away from the north-pole pointing direction to make an angle φ a force acts on the needle to bring it back. Such dipoles. THE PHYSICAL BASIS OF THE NMR EXPERIMENT Imagine a charge travelling circularily about an axis. For the case of a dipole moment that has been created by a rotating charge this force is proportional to the strength of the field (B) and to the charge (m). This is similar to a current that flows through a conducting loop: µ FIGURE 1. a magnetic dipole has been created. are expected to align with the direction of the magnetic field. In other words.

) Inertia Force (Torque) Momentum Work Kinetic energy Power x v = dx/dt a = dv/dt m F p = mv W = Int F dx K = 1/2 mv P=Fv 2 Pure Rotation (fixed axis) θ ω =dθ/dt α = dω/dt I T=r xF J=rxp W = Int T dθ K = 1/2 Iω2 P=Τω Note that the direction of the momentum is tangential to the direction along which the particle moves.6 . it is the axis of rotation which is perpendicular to the plane. Left: linear momentum. Rotation of the nuclear momentum about its own axis (blue) and about the magnetic field axis (red).LECTURE COURSE: NMR SPECTROSCOPY tional movements of the linear momentum. J=rxp p=mv FIGURE 3. The torque is formed by the vector product between the radius and the momentum (see additional material) and is described by a vector which is perpendicular to both radius and momentum. In fact. The corresponding potential energy is ϕ E pot = – ∫ T dϕ 0 In contrast to the behaviour of a compass needle the nuclear spin does not exactly align with the axis of the external field: ω B FIGURE 4. Right: angular momentum Excurse: Corresponding parameter for translational and rotational movements PureTranslation (fixed direction) Position Velocity Acceleration Translational (Rot. First Chapter: Physical Basis of the NMR Experiment Pg.

LECTURE COURSE: NMR SPECTROSCOPY This is a consequence of its rotation about its own axis. The frequency of the precession is proportional to the strength of the magnetic field: ω=γB The proportionality constant is called the gyromagnetic ratio. the gyroscope precesses about the axis perpendicular to the ground with a frequency ω that is called the precession frequency (right side) and takes a well-defined angle φ with respect to the rotation axis: ω φ The frequency ω is expressed in terms of a angular velocity (see additional material). The precession frequency ω0 = ν ο 2 π is called the Lamor frequency.13C. It rotates (spins) about its own axis (the blue arrow) and precesses about the axis of the magnetic field B (the red arrow). However. When the this gyroscope is placed with the shaft perpendicular to the ground and released it will fall down (see Fig. In contrast to a compass needle which behaves "classically" in the way that it can adopt a continous band of energies depending only on the angle φ it makes with the field the corresponding angle φ of the nuclear dipole moment is quantitized. left side). when the wheel spins about the axis of the shaft. This property is called spin. Excurse: The movement of a classical gyroscope Imagine a wheel fixed to a shaft. below. Of course. The sum of the dipole moments of identical spins is called magnetization: M = ∑ µi j Pg.19F etc. It is specific for the kind of nucleus and therefore has a different value for 1H. we will later introduce the quantum-mechanical treatment shortly. we do not observe single molecules but look at an ensemble of molecules (usually a huge number of identical spins belonging to different molecules). Hence.7 First Chapter: Physical Basis of the NMR Experiment .

LECTURE COURSE: NMR SPECTROSCOPY 1.8 .1 The Bloch equations: The Bloch’s equations describe the fate of magnetization in a magnetic field. We have stated before that a force ( a torque) acts on a dipole moment when it is placed inside a mgnetic field such that the dipole moment will be aligned with the direction of the static magnetic field. Mathematically this is decribed by forming the vector product between dipole moment and magnetic field (see add. First Chapter: Physical Basis of the NMR Experiment Pg. In the absence of an additional B1 field the components of the field along the cartesian axes are: Bx = 0 By = 0 Bz = Bo which leads to the following set of coupled differential equations: ∂ M ( t ) = γ My B0 – Mx ⁄ T2 ∂t x ∂ M ( t ) = –γ Mx B0 – My ⁄ T2 ∂t y ∂ M ( t ) = –( Mz –M0 ) ⁄ T1 ∂t z In order to drive the system into the equilibrium state (no transverse coherence. relative population of the α/ β states according to the Boltzmann distribution) additional terms have been phenomenologically introduced such as Mx/T2 for the Mx component. material for the mathematics involved): T Considering that (see page 2) T = and that M = ∑ µi = ∑ γ Ji i i ∂J ∂t = M×B we find that ∂ ∂M = γ J = γT = γ ( M × B ) ∂t ∂t which describes the time-evolution of the magnetization.

.I-1. Therein. the z-component of the angular momentum J is quantitized and can only take discrete values Jz = m h 2π where m is the magnetic quantum number. For spins with I=1 nuclei three different values for Jz are allowed: First Chapter: Physical Basis of the NMR Experiment Pg.LECTURE COURSE: NMR SPECTROSCOPY The solutions to these equations are given by: M x ( t ) = [ M x ( 0 ) cos ωt – M y ( 0 ) sin ωt ]e M z ( t ) = M eq + [ M z ( 0 ) – M eq ] e ( – t ⁄ T2 ) ( – t ⁄ T2 ) M y ( t ) = [ M x ( 0 ) sin ωt + M y ( 0 ) cos ω t ]e ( – t ⁄ ( T1 ) ) The first two equations describe mathematically a vector that precesses in a plane (see add.2 Quantum-mechanical treatment: The dipole moment µ of the nucleus is described in quantum-mechanical terms as µ= γ J Therein.9 ..0. 1. -I+1. Hz Hz Jz = + Jz = 0 Jz= - I=1/2 I=1 Jz= + h 4π h 4π h 4π Jz = - h 4π FIGURE 5. mat. …. The latter can adopt values of m = I. For I=1/2 nuclei. When looking at single spins we have to use a quantum-mechanical treatment. I with I being the spin quantum number. Vectorial representation of the z-component of the angular momentum for a spin I=1/2 (left) and spin I=1 (right) nucleus.) and hence give the correct description for what we will be looking at in a rather pictorial way in the following. m can only be +1/2 or -1/2. J is the spin angular momentum and γ the gyromagnetic ratio of the spin... giving rise to two distinct energy levels.

that only transitions with ∆m= Jz= + m= +1/2 β + 1 / 2 γ h / 2π B ∆ E=hν Jz= .and β. Equilibrium state with similarily populated α. is then µzB = γ J B h B 2π The energy difference ∆Epot. The sum of the dipole moments of all nuclei is called magnetization.1 / 2 γ h / 2π B FIGURE 6. which corresponds to the two states with m=±1/ E pot = γ ±1 are allowed): Hz h 4π Ε (the quantum-mechanical selection rule states.h 4π m= -1/2 α Bo = 0 Bo ≠ 0 .states of I=1/2 nuclei 1. In equilibrium the spins of I=1/2 nuclei are either in the α. Energy levels of the α. uncorrelated phases (middle) and no net phase coherence (right).and β-states (left). First Chapter: Physical Basis of the NMR Experiment Pg. Therefore.3 The macroscopic view: The NMR experiment measures a large ensemble of spins derived from a huge number of molecules. However.10 .or β-state and precess about the axis of the static magnetic field. their phases are not correlated. For each vector pointing in one direction of the transverse plane a corresponding vector can be found which points into the opposite direction: Bo=z Bo=z y x x y y ΣΣ y x x y y x x FIGURE 7. we now look at the macroscopic bevaviour.LECTURE COURSE: NMR SPECTROSCOPY E pot = 2.

y plane) is observed. Only transverse magnetization leads to a detectable signal in the receiver coil and hence contributes to the NMR signal.y plane (the vector sum of the transverse components) is vanishing provided that the phases of the spins are uncorrelated.y plane the resulting transverse magnetization is non-vanishing giving rise to a signal in the detection coil.LECTURE COURSE: NMR SPECTROSCOPY Therefore.y plane(middle) and sum vector of the x. application of a radiofrequency (RF) field perpendicular to the magnetic field (e. along the x. This is shown in the following figure in which the vector sum of longitudinal (blue) and transverse (yellow) magnetization of uncorrelated spins which are only in the α-state (A) or in both states (B) is displayed as well as for correlated states (C and D): It is evident that only for correlated states transverse magnetization (magnetization in the x.or β(left) states and the projection onto the x.g.11 . When the motions of spins are described in vector diagrams most frequently only the vector sum of the spins is shown in order to simplify it.y component. However. This state is called coherence. the projection of all vectors onto the x. creates a state in which the phases of the spins are partially correlated. The magnitude and direction of the magnetization vector can be calculated by vectorial addition of the separate dipole moments. the so-called B1 field.or y-axis). Therefore. only the vector sum of the transverse component is First Chapter: Physical Basis of the NMR Experiment Pg. Coherent state of spins in α. Bo=z y x y x y x Σ FIGURE 8. When projecting the vectors onto the x.

y) plane induces the NMR signal it is convenient to look at the vector sum of the transverse components which present a magnetic field that rotates in space: z x y z x z x ∆t y 2∆t y FIGURE 10. which delivers the orthogonal B1 field. Spins precessing at different velocities (and hence have different chemical shifts) are color coded.LECTURE COURSE: NMR SPECTROSCOPY shown to describe the relevant part of the spins: A Bo=z Bo=z B Bo=z Bo=z y x x y x y y x C Bo=z y x Bo=z D Bo=z y x Bo=z y x y x FIGURE 9. When the First Chapter: Physical Basis of the NMR Experiment Pg. Simultaneously this coil serves to pick up the NMR signal. The experiment setup of the spectrometer includes a radiofrequency coil.12 . To understand how the magnetization that rotates in the transverse (x. The magnitude of the current that is induced in the receiving coil depends on the orientation of the magnetization vector with respect to the coil. Different states of the spin system (see text).

Left:Rotating spin with its position at certain time intervals 1-6 are marked. Because the magnetization rotates the induced current follows a sine (or cosine) wave (see additional material). e. Spins with different chemical shift. precess at different rates and hence the frequency of the current is the larmor frequency. The amplitude of the induced current is following a (co) sine wave. Right: Corresponding signal in the receiver coil. In the picture above the induced current is shown for different orientations of the transverse magnetization.g. in the generator the (coil) loop is rotating and the magetic field is stationary.LECTURE COURSE: NMR SPECTROSCOPY magnetization is pointing towards the coild the induced current is at maximum. different larmor frequencies. First Chapter: Physical Basis of the NMR Experiment Pg. the rotating dipoles in NMR create a sine-modulated current. opposite to the situation in a NMR experiment. However. the frequency of the precessing spins: . Left: Conducting loop rotating in a magnetic field with corresponding current induced (right). z 5 4 2 x 6 1 y 3 I Det 1 2 6 3 5 t 4 T FIGURE 11. This situtation is very similar to a conducting loop that rotates in a magnetic field as encountered in a generator: I N S t FIGURE 12. Similarily.13 .

It allows to transform data from the time into the frequency domain: I(t) → FT I( ν ) I(det) t Α Β FT t C ν C Β Α FIGURE 13.14 .4 Fourier Transform NMR: Spins that belong to nuclei with different chemical environment precess with different frequencies. The Fourier Transformation is a convenient mathematical tool for simultaneous extraction of all frequency components. that is perpendicular to the axis of the static field (the so-called B1 field).5 The interaction between the magnetization and the additonal RF (B1) field: When only the static B0 field is present the spins precess about the z-Axis (the axis of the B0 field). For more complex compounds that contain many different spins the signal in the receiver coil is a superposition of many different frequencies. To emphazise that this field is turned on for only a very short period of time usually it is called a (RF) pulse. First Chapter: Physical Basis of the NMR Experiment Pg. the magnetization does not precess in the transverse plane for infinite times but returns to the z-axis. 1. To create spin-coherence an additional RF field is switched on. Signals from 3 spins with different precession frequencies (left) and their corresponding Fourier transforms (right) In reality.LECTURE COURSE: NMR SPECTROSCOPY 1. During the time where B0 and B1 field are both present the magnetization rotates about the axis of the resulting effective field. This phenomenon is called relaxation and leads to decreasing amplitude of signal in the detector with time.

g. This operation transforms from the laboratory frame to a rotating frame. e. right: Rotating frame frequencies. it is very convenient to transform into a coordinate system that rotates with the precession frequency ωo of the B0 field (in the picture above that means that the small "blue" man jumps onto a platform that rotates with the larmor frequency of the spin. the B1 field is not static but rotates about the z-axis (the axis of the static field) with a frequency that is very similar to the precession frequency of the spins about the z-axis. a frame in which the coordinate system is not fixed but rotates with ωο): Bo ω ω0 y x B1 ω − ω0 ω0 Bo ω Bo ω FIGURE 15.15 . To understand the effect of the rotating B1 field. the B0 field corresponds to precession frequencies of hundreds of MHz whereas the B1 field is about 1-20 KHz). For those spins whose lamor frequency is exactly ωο the effective Bo field they First Chapter: Physical Basis of the NMR Experiment Pg. If the B1 field would be applied fixed along the x-axis all the time it would have an negligible influence onto the spins. middle: Laboratory frame frequencies.LECTURE COURSE: NMR SPECTROSCOPY This effective field is calculated by taking the vector sum of the B0 and B1 field: ω0 Bo Bo Bo Beff B1 ω1 B1 FIGURE 14. the B0 field is larger than the B1 field by many orders of magnitude (for protons. left: Static Bo field and rotating B1 field. Bo and B1 field (middle) and vector additon to calculate the effective field formed by Bo and B1 Now. Movement of spins in the presence of only the B0 field (left). However.

LECTURE COURSE: NMR SPECTROSCOPY
experience in such a rotating reference frame is zero. These spins then only feel the effect of the B1 field and precess about the B1 axis as long as the B1 field is turned on. Spins that have a slightly different precession frequency ω the strength of the B0 field is B’=B0-ω/γ (For ω=ω0, B’ is zero). During RF pulses spins which are exactly on-resonance (e.g. whose precession frequency is equal to the precession frequency of the B1 field about the z-axis) only feel the B1 field. These spins precess about the axis of the B1 field until the B1 field is turned off again:

B 0 - ω/γ

B’
Beff

Beff

B’

Beff B1

Beff

B1
B1

ωo

ωo

ωo

FIGURE 16. 1st : Vectorial addition of B1 and Bo field. 2nd: Direction of the effective field for spins exactly onresonance, 3rd more off-resonance, 4th far off-resonance.

The overall flip-angle they have experienced during that time tp is α = γ B1 tp Usually the pulse lengths tp are choosen such that the flip angle α is 90 or 180 degrees. As stated above the effect of the B1 field is to create phase coherence amongst the spins. The macroscopic effect of coherent spins is transverse magnetization. 1.6 Description of the effect of the B1 field on transverse and longitudinal magnetization using the Bloch equations: We have seen before that ∂M = γ (M × B) ∂t Now, Bx = B1cosω0t
First Chapter: Physical Basis of the NMR Experiment Pg.16

LECTURE COURSE: NMR SPECTROSCOPY
By = B1sinω0t Bz = Bo and hence ∂ M ( t ) = γ ( M y B 0 + M z B 1 sin ω 0 t ) – ( M x ⁄ T 2 ) ∂t x ∂ M ( t ) = – γ ( M x B 0 – M z B 1 cos ω 0 t ) – ( M y ⁄ T 2 ) ∂t y ∂ M ( t ) = – γ ( M x B 1 sin ω 0 t + M y B 1 cos ω 0 t ) – ( M z – M 0 ) ⁄ T 1 ∂t z To solve these equations they are conveniently transformed into a reference frame that rotates at the frequency ω0 about the z-axis. Therein M x = M x cos ω 0 t – M y sin ω 0 t M y = M x sin ω 0 t + M y cos ω 0 t In this "primed" coordinate system the equations become: ∂M x ′ ′ = ( ω 0 – ω )M y – ( M x ⁄ T 2 ) ∂t ′ ∂M y ′ ′ = –( ω0 – ω ) Mx + γ B1 Mz –My ⁄ T2 ∂t ′ ∂M z ′ = –γ B1 My – ( Mz – M0 ) ⁄ T1 ∂t The solutions are rather involved and will not presented here since the signals are usually recorded when only the B0 field is present nowadays. However, it is important to see that in this frame the effect of the B1 field on transverse magnetization aligned along the y' axis is to rotate it about x' with a frequency of ω1= γ B1.
′ ′ ′

1.7 The excitation profile of pulses: A pulse is a poly-chromatic source of radiofrequency and it covers a broad band of frequencies. The covered band-width is proportional to the inverse of the pulse duration. Short pulses are required for uniform excitation of large bandwidths, long (soft) pulses lead to selective excitation. Usually the non-selective (hard) pulses have B1 fields of the order of 5-20 kHz and pulselengths of 5-20 µs, whereas selective (soft) pulses may last for 1-100 ms with an appropriately
First Chapter: Physical Basis of the NMR Experiment Pg.17

LECTURE COURSE: NMR SPECTROSCOPY
attenuated RF amplitude:

FIGURE 17. Left: Excitation profile of a “hard” pulse, right: Ex. profile of a “soft” (long) pulse

1.8 Relaxation: The magnetization does not precess infinitely in the transverse plane but turnes back to the equilibrium state. This process is called relaxation. Two different time-constants describe this behaviour: a) the re-establishment of the equiilibirum α/β state distribution (T1) b) dephasing of the transverse component (destruction of the coherent state, T2). The T2 constant characterizes the exponential decay of the signal in the receiver coil:

FIGURE 18. Right: Signal in absence of transverse relaxation, right: real FID (free induction decay)

The precessing spins slowly return to the z-axis. Instead of moving circularily in the transverse plane they slowly follow a spiral trajectory until they have

First Chapter: Physical Basis of the NMR Experiment

Pg.18

19 . It charac- First Chapter: Physical Basis of the NMR Experiment Pg. Because of frictional energy loss the oscillation is damped so that after some time the spring is not oscillating anymore: FIGURE 20. The damping time-constant is called T2 or transverse relaxation time.z-axis: FIGURE 19.y. left: Trajectory of the magnetization. The oscillation occurs periodically so that the displacement from the equilibrium position follows a cosine time-dependence. Monitoring the position of a weight fixed to a spring depending on the time elapsed after release can be described by an damped oscillation. right: individual x.LECTURE COURSE: NMR SPECTROSCOPY reached their inital position aligned with the +/.z component A mechanical equivalent is a spring oscillating in time.

the strength of the dipolar interaction with other I=1/2 nuclei.9 The intensity of the NMR signal: If the α and β states would be populated equally.LECTURE COURSE: NMR SPECTROSCOPY terizes the time it takes so that the signal has decayed to 1/e of its original magnitudeThe transverse relaxation constant T2 is related to the linewidth of the signals. Eβ-Eα First Chapter: Physical Basis of the NMR Experiment Pg. The transverse relaxation constant T2 of spin I=1/2 nuclei is mainly governed by . The width of the signal at half height is given by: ∆ν 1 ⁄ 2 = 1 ⁄ ( πT 2 ) Fast decay leads to broad signals. 1. slow decay to sharper lines: FIGURE 21. rapidly decaying ones to broad lines (right).the overall tumbling time of the molecule which is related to its size.20 .the homogeneity of the magnetic field ( the "shim") . no netto change in energy could be observed. depending on the number and the distance of neighbouring nuclei . Slowly decaying FIDs lead to narrow lines (left). The signal intensity is proportional to the population difference of the two states. The relative population of the states can be calculated from the Boltzmann distribution: (E β − E α ) kT N = e Nβ α with T being the measuring temperature and k the Boltzmann constant.

Furthermore. the energy difference in NMR experiments is very small. and therefore the signal is much weaker. To be more precise the signal that is induced in the receiver coil depends on both the gyromagnetic ratio of the excited and detected spin: Int prop γex * γdet3/2 First Chapter: Physical Basis of the NMR Experiment Pg. much smaller than in IR or UV spectroscopy. the required quantities of sample are much larger.37 100 Since γ of is approx. The energy difference ∆E depends on the gyromagnetic ratio γ: E=γ nucleus 1H 13C 19F 15N 31P h Bo 2π Srel 1.2712 1.517 -0. [%] 99. 10 times larger for 1H than for Nα/Nβ is much larger and the signal much more intense. ∆E also depends on Bo. Abd.11 100 0.673 2. the natural abundance of 1H is 300 times larger than for 15N. Unfortunately. Higher fields lead to dramatically reduced measurement times. Direct observation of 15N nuclei requires high concentrations and long measuring times.675 0. In other words.21 .76 3.00 1.0665 15N IN 1/2 1/2 1/2 1/2 1/2 1H γ [108 T-1s-1] 2.083 Nat.and the β-state.83 0.98 1.85 10-4 10-6 0.LECTURE COURSE: NMR SPECTROSCOPY is the energy difference between the α.

coils and probehead Second Chapter: Practical Aspects Pg. The helium dewar is surrounded by a liquid nitrogen dewar to reduce loss of the expensive helium: room-temperature shim tube liq. Schematic drawing of the magnet. Therein. He dewar Main Coil Probehead FIGURE 1.1 The magnet system: Usually the static magnetic field nowadays is provided by a superconducting (supercon) magnet. THE COMPONENTS OF A NMR INSTRUMENT The NMR instrument consists mainly of the following parts: • • • • • • • • the magnet probehead(s) radiofrequency sources amplifiers analog-digital converters (ADC's) the lock-system the shim system a computer system 1. N2 dewar liq.LECTURE COURSE: NMR SPECTROSCOPY 1. the main coil that produces the field is placed in a liquid helium bath so that the electric resistance of the coil wire is zero.22 . showing He and N2 dewars.

1.LECTURE COURSE: NMR SPECTROSCOPY Additional so-called cryo-coils are placed in the He-bath to correct partially for field in homogeneity.2 The probehead: The probehead contains the receiver/transmitter coil (actually only a single coil for both purposes): ˜ ˜ Spinner Transmitter/ Receiver Coil ˜ ˜ Resonance Circuit Cables to Preamp FIGURE 2. most probes contain two coils: An inner coil tuned to deuterium (lock) and a second frequency and an outer coil tuned to a third and possibly a fourth frequency. On its surface the r. shim coils are located.23 . It has high proton sensiSecond Chapter: Practical Aspects Pg. The inner coil is more sensitive (higher S/N) and gives shorter pulselengths. View of the spinner with sample tube placed in probehead However. The deuterium channel is placed on most probes on the inner coil. The sample that is mostly contained in a deuterated solvent inside a 5mm glastube is placed inside a spinner and then lowered through the r.t. These are the ones that have to be adjusted by the user. shim tube so that it enters the probehead from the top. The magnet is vertically intersected by the room-temperature shim tube. An inverse carbon probe has the inner coil tuned to 2H and 1H and the outer coil to 13C.t.

Part of them are often modulaters and phase shifters that change the shape and the phase of the signals. The analog-digital converters (ADC's) are required because the signal is recorded Second Chapter: Practical Aspects Pg.LECTURE COURSE: NMR SPECTROSCOPY tivity and is well-suited for inverse detection experiments like HSQC or HMBC. The receiver coil is in the center of the magnetic field. The resonance circuit inside the probe also contains the capacitors that have to be tuned when changing the sample (especially when the solvent is changed). Once the spinner is lowered the NMR tube is positioned such that the liquid inside is covered by the receiver coil completely. The amplifiers are low-noise audio-amplifiers which boost the outgoing and incoming signals. The receiver/transmitter coil should not be confused with the cryo-coils (coils placed in the He bath) that produce the static field. N 2 Inlet liq.Frequency resolution is usually better than 0.1 Hz.24 . The preamplifier also contains a wobbling unit required for tuning and matching the probe: liq. The frequency synthesizers nowadays are completely digital. They are in the range of 50-100 Watts for protons and 250-500 Watts for heteronuclei. Magnet and preamplifier system The radiofrequency sources (frequency synthesizers) are electronic components that produce sine/cosine waves at the appropriate frequencies. He System Probehead Preamp FIGURE 3. The probehead is then connected to the preamplifier which is usually placed close to the magnet and which performs a first amplification step of the signal. A carbon dual probe has the inner coil tuned to 2H and 13C and the outer to 1H and is dedicated for carbon experiments with proton decoupling.

LECTURE COURSE: NMR SPECTROSCOPY
in analog form (superposition of various damped harmonic oscillations) but must be in digital form in order to be accessible to Fourier transformation by the computer. In modern nmr spectrometers 16 or 18 bit digitizers are used. This means that the most intensive signal can be digitized as 218. This has severe consequences for the dynamic range because it implies that signals with less than 1/218 of the signal amplitude cannot be distinguished in intensity. Therefore, the receiver gain (the amplification of the signal) should be adjusted such that the most intense signal almost completely fills the amplifier. However, some care has to be paid in experiments that utilize water suppression: Sometimes the most intense signal in a 2D experiment does not occur in the first increment because the water may be (due to radiation damping) stronger in later increments. It is advisable to set the evolution time to longer values (e.g. 100ms) and observe the intensity of the water signal. The computer system is an industry-standard UNIX machine with lots of RAM. However, off-side processing on PCs is also possible and the PC is also started being used as host computers on the spectrometer (unfortunately). 1.3 The shim system: Considering that the precession frequencies are proportional to the magnetic field strength the magnetic field has to be highly homogenous across the sample volume in order to be able to observe small frequency differences (small couplings). If the field would not be highly homogenous, the effective field strengths in different volume compartments inside the sample would be different and the spins therefore would precess at different rates. This would lead to considerable line-broadening (inhomogeneous broadening). The shimsystem is a device that corrects for locally slightly different magnetic fields. The shimsystem consists of two parts: (A) the cryo-shimsystem and (B) the room-temperature shims. The basic principle behind them is the same. Small coils are supplied with regulated currents. These currents produce small additional magnetic fields which are used to correct the inhomogeneous field created by the main coil. There are a number of such coils of varying geometry producing correction fields in different orientations. In the cryo-shim system the coils are placed in the He bath, they are usually only adjusted by engineers during the initial setup of the instrument. The room-temperature shim system is regulated by the user whenever a new sample is placed in the magnet or when the temperature is changed. The room temperature shim system is grouped into two sets of shims • • the on-axis (spinning) shims (z,z2,z3,z4..) the off-axis (non-spinning) shims (x,y,xy...)

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The on-axis shims only correct for inhomogeneity along the z-axis. They are highly dependent on the solvent and the solvent filling height. At least the lower order gradients (z, z2 and z3) should always be adjusted. The z4 gradient depends very much on the filling height and its adjustment is tedious. Therefore, in order to speed up the shimming process, the filling height should (if possible) always be the same (e.g. 500 or 550 µl) and a shimset for that height and probehead should be recalled from disk. The off-axis shims usually do not have to be adjusted extensively (only x, y, xz and yz routineously). Wrong offaxis shims lead to spinning side-bands when the sample is rotated during measurement. Their contribution to the lineshape is largely removed with spinning but this unfortunately introduces disturbances. It should therefore be avoided during 2D and NOE measurements. The name of the on-axis shims is derived from the order of the polynomial that needs to be used to correct for the field gradient along the z-axis:

Bo

z

z2

z3

z4

FIGURE 4. Field dependence of on-axis shims

The z-shim delivers an additional field that linearly varies along the sample tube. The z2 shim has its largest corrections to the field at the top and the bottom of the sample.
For the more experienced spectroscopist the misadjusted on-axis shim can mostly be recognized from the signal lineshape. Misadjusted shims with even exponentials (z2,z4,z6) give asymmetric signals, those with odd exponentials (z1,z3,z5) show up as a symmetrical broadening. This is due to the symmetry of the function needed to correct of it. Z4 for example increses the field strength at the the top and the bottom of the sample and hence gives only frequencies larger than the correct frequency. Z3 in contrast increases the freuqnecy at the top and decreases the frequency at the bottom of the sample. Therefore, in the case of z4, there is a proportion of singal shifted to higher frequencies and hence to one side of the signal, whereas z3 give proportions of the signals shift to lower and higher frequencies resulting in asymmetric and symmetric errors for the former and latter, respectively. The closer the bump is to the base of the signal the higher the gradients needs to be to correct for it.

Shimming is usually performed by either observing the intensity of the lock

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signal (vide infra) or by monitoring the shape of the FID.:

FIGURE 5. Misadjusted shims and appearance of corresponding signals after FT.

Another way of controlling the homogeneity of the magnetic field is to watch the shape of the FID. When the field is highly homogenous, the FID should fall smoothly following an exponential. The resolution of the signal determines how long the FID lasts:

FIGURE 6. FID of perfectly shimmed magnet (left) and mis-shimmed magnet (right).

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the received signal is also transformed down to audio frequency. This is achieved by delivering a suitable current to the z0 shim coil. NOE measurements. such that the resonance frequency of the solvent deuterium line remains constant. The system has a feedback loop.LECTURE COURSE: NMR SPECTROSCOPY 1. Similarly. Usually the lock system has to be activated when the sample has been placed in the magnet. which generates corrections to the magnetic field strength Bo. Modern digital lock system allow to adjust the regulation parameters of the lock channel. one can determine how fast the lock circuit reacts (the damping of the lock).Thereby. The stability is influenced by many factors of which the temperature instability has the largest influence. The deuterium lock measures the frequency of the deuterium line of the solvent.4 The lock-system: Stability of the magnetic field is achieved by the deuterium lock system. that means distinguish frequencies of spins rotating slower than the carrier frequency from those that precess at higher rates: a) single detector -ν 0 +ν -ν 0 +ν FIGURE 7. all other resonance frequencies are also kept constant. mostly 2D measurements and even more importantly.28 . Bottom: Signal due to positive frequency. deuterated solvents have to be used for FT-NMR. In addition we require quadrature detection: A single coil cannot distinguish positive and negative frequencies. The stability of the lock system is critical for many experiments. Top: Signal due to negative frequency. Consequently. Second Chapter: Practical Aspects Pg. the carrier frequency.5 The transmitter/receiver system: It is much more convenient to handle audio-frequencies than handling radiofrequencies. Hence. When the lock-system is not activated the naturally occurring drift of the magnetic field leads to varying resonance frequencies over time and hence to linebroadening. that coincides with the center frequency of the recorded spectrum. We have seen before that the B1 field rotates about the axis of the static field with a certain frequency. To provide good sensitivity of the lock the lock power should be adjusted just below saturation (lock-line must still be stable!). For experiments utilizing pulsed-filed gradients the lock should be highly damped in order to avoid that the lock tries to correct each time the field recovers from the gradient! 1.

modulated and the other the sine-modulated component of the signal. that both the transmitter and the receiver system effectively work in the rotating frame. However. However. Thereby. the frequency with which the B1 field rotates. detection 0 +ν One could would then detect the cosine. Sine-and cosine-modulated components of the signal result from a different trick: The signal that comes from the receiver coil (which of course is HF (MHz)) is split into two.29 . What we actually measure are therefore not MHz-frequencies but frequency-offsets (differences to) the carrier frequency. Adding sine.y plane and in the receiver system by subtracting the transmitter frequency from the signal. Fourier transform of a sin (top) and cosine wave (bottom). These can be handled in the following electronics much easier. The signal coming from Second Chapter: Practical Aspects Pg.LECTURE COURSE: NMR SPECTROSCOPY In principle.and cosine modulated components of the signal cancels the “wrong” frequency component: FT sin ωt cos ωt FT Σ FIGURE 9. Both parts are mixed with the transmitter (carrier) frequency [for Bruker machines: SFO1]. The rotating frame was introduced in the transmitter system by having the B1 field rotating in the x. such a separation could be achieved by using two receiver coils which differ by 90° in phase (a quadrature detector): b) quadrature detector -ν 0 +ν -ν FIGURE 8. Sign discrimination from quad. In addition. We do see now. we have introduced quadrature detection: Transmitting and receiving is done on the same coil. the radiofrequencies (MHz range) are transformed into audiofrequencies (kHz range). the phase of the transmitter frequency that is added differs by 90 degrees for the two parts. probeheads contain only one coil.

LECTURE COURSE: NMR SPECTROSCOPY
the coil is blanked for a short time after the pulses (the so-called pre-scan delay) and then used for detection. The transmitter/receiver system contains mainly analog parts.

Splitter 90° pase-shifter

HF (MHz)
cos ωt

sin ωt

Mixer

SFO1 (300.13 MHz)

+
Amplifier Analog-Digital Converter ADC

Audio ( 0-KHz)

FT
FIGURE 10. Scheme of the RF path for a 300 MHz NMR spectrometer (proton detection).

When cosine and sine-modulated signals are slightly differently amplified so-called quadrature images remain. They are usually observed for intense signals when few scans are recorded and can be easily recognized because they are mirrored about the
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zero-frequency (the middle of the spectrum). Therefore, modern instruments utilize “oversampling”. A much larger spectral width is sampled, such that the quadrature images do not fall into the observed spectrum any longer. Prior to processing the noninteresting part of the spectrum is removed.

2. BASIC DATA ACQUISITION PARAMETER
The following paragraph summarizes the parameters that govern the acquisition of 1D spectra and hence have to be properly adjusted before the measurement. The 1D spectrum is characterized by the frequency in the center of the spectrum and by its width. Remember that the B1 field rotates about the axis of the static field with a certain frequency:

Bo

ω ω0 y x B1

ω Bo ω0

ω1

FIGURE 11.

Exactly this frequency is mixed with the signal that comes from the receiver coil and therefore is effectively subtracted from the signal frequency. Hence, the signal is measured in the rotating frame and the frequencies will be audio frequencies (0- kHz). If the precession frequency of a particular spin is exactly the same as the frequency with which the B1 field rotates it will have zero frequency and appear in the center of the spectrum. The frequency of the rotating B1 field is called the (transmitter) carrier frequency:
spectral width (sw)
- sw/2 0 transmitter frequency (sfo1) + sw/2

FIGURE 12. Basic parameter for specifying the acquired spectral region

sfo1: spectrometer frequency offset of the first (observe) channel this parameter determines the carrier offset. Frequencies larger than sfo1 will be on the left side of the spectrum, smaller frequencies on the right side. sfo1 is the absolute frequency (in MHz). If you want to make a small change of the carrier position, you can change the offset o1
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sfo1 = bf1 + o1 bf1 is the so-called basic-spectrometer frequency, e.g. 500.13 MHz and o1 is the offset, a frequency in the audio (0-> KHz) range. sfo2: spectrometer frequency offset of the second (decoupler) channel like sfo1, required for example for acquisition of proton decoupled carbon spectra. The proton frequency is then defined on the second channel and should correspond to the center of the proton spectrum. Now, the next question is, how to adjust the spectral width (the width of the spectrum in Hz). This done by proper choice of the dwell time. The signal is sampled stroboscopically and neighboring data points are separated by the dwell time. The Nyquist theorem says that at least one point per period must be sampled in order to characterize the frequency correctly. Since the highest frequency is sw (in Hz), the dwell time must be dw = 1/sw

(td =16)
DW

AQ

FIGURE 13. Left: Sampled data points. Right: Black: Sampled data points. Red: Missing sampling point for a frequency of twice the nyquist value..

Signals that have a higher frequency have made more than a 360 degree rotation between the sampling points. On older instruments (AMX spectrometers) they are attenuated by the audio-filters. They are recognized from the fact that they cannot be phased properly, usually. On the modern instruments (those with oversampling, DRX series), signals outside the spectral width completely disappear. Therefore, it is always recommended to record the spectrum over a very large spectral width initially to make sure that no signals at unusual places (e.g. OH protons at 20 ppm or signals below 0 ppm) are lost.

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ns: number of scans S ∝ ns the number of FIDs which are co-added. aq: acquisition time determines the total time during which a single FID is sampled aq = td * dw for 1D spectra. td: time domain data points The number of points that are sampled is called "time domain" data points (td).33 . aq is set such that the signals have completely decayed towards the end of the FID (which corresponds to the transverse relaxation time T2). RD: relaxation delay time between end of sampling of the FID and start of the next experiment. Sometimes. only noise will be sampled at the end of the FID. the resolution is lower. dw: dwell time is the time spacing between sampling of two consecutive data points.LECTURE COURSE: NMR SPECTROSCOPY sw: spectral width gives the width of the acquired spectrum (on Bruker instruments. The complete measuring time for a simple 1D spectrum is approx. The effective time for relaxation is given by the repetition rate Second Chapter: Practical Aspects Pg. the minimum number of ns is determined by the phase-cycle of an experiment. dw = 1/sw or dw = 1/2sw The dwell time is determined by the inverse of the spectral width (or the inverse of twice the spectral width. ttot = ns (RD+aq) in which ns is the number of scans and RD the relaxation delay (vide infra). On Bruker instruments. The longer the FID is sampled the better will be the resolution in the spectrum provided there is still signal in the FID. if aq is >> T2. and therefore the experimental time is unnecessarily prolonged. If aq is set to a shorter value. swh in units of Hz). sw is in units of ppm. The signal to noise ratio of a measurement N increases as which means that in order to improve the S/N by a factor of two the measurement time must be increased by a factor of 4. depending on the quadrature detection mode). the relaxation delay is characterized by the parameter d1.

The following conventions are made in pulseprograms: • • • • p190˚ transmitter pulse length p2180˚ transmitter pulse length p390˚ decoupler pulse length p4180˚ decoupler pulse length Pg. it is in the kHz range (or smaller).. However. For automatic adjustment of the receiver gain on spectrometers use rga..LECTURE COURSE: NMR SPECTROSCOPY tr = aq + d1 AQ tr FIGURE 14.p2. ω1.256. If the receiver gain setting is too high. the first points of the FID are clipped. The B1 field rotates about the z-axis with the frequency ωo. p1.. D1 rg: receiver gain This is the amplification of the signal. 1. Settings are possible in powers of 2 (e. the dynamic range of the instrument is not exploited fully and very small signals may be lost...34 Second Chapter: Practical Aspects . We have seen before that if the frequency ω with ωo=SFO1 which the spin precesses about the z-axis is identical to ωo it does not feel B0 in the rotatω1=(4*(PW90) ) -1 ing frame. If the receiver setting is too low. Definition of the recycle delay.. The receiver gain has to be set such that the maximum intensity of the FID fills the ADC (analog-digital converter).32k).length of pulses [in µs] ω Bo length of pulses in µs.g. which will lead to severe baseline distortions.. The strength of the B1 field is correlated to the time required for a 360 degree rotation PW360 via ω1= γB1 / 2π = 1/(PW360) Usually either 90 or 180 degree rotations are required in NMR. is much smaller.128.It will then precess about the axis of the effective field which in that case corresponds to the axis of the B1 field. This is the duration that the B1 field is switched on. the precession frequency about the B1 axis..

31P .). heteronuclear pulsing is done in the high-power mode and cannot be regulated (always full power).hl6 (hl= 1H level). power setting parameters are tl0.35 .dl6 (decoupler level 1..dl1. at which the B1 field is applied: Φ = τp γB1 For proton pulses.. For pulses on the heteronuclei (13C.hl2.. the power level is given by the parameters hl1. In the default mode.. Second Chapter: Practical Aspects Pg.tl1.2.LECTURE COURSE: NMR SPECTROSCOPY The flip angle of the pulse Φ is determined not only by the length of the pulse τp... On the newer DRX instruments the power levels are specified as pl1:f1 (power level 1 on channel 1).. 15N.tl6 (transmitter level 1.) for the low power mode.hl3.) or dl0.2. but also by the power level...

When the length of the pulse is set corresponding to a 180˚ pulse. for 15N:300W). The length of the pulses has therefore to be determined for a given power setting. a spectrum is acquired with setting the length of the pulse corresponding to a small flip angle. The length of the 90˚ pulse can be calculated to be half of the length of Third Chapter: Practical Aspects II Pg. phasing of the spectrum. as well as for the 360˚ pulse.36 . higher power setting must be applied (typically for 1H: 50 W.1 Calibration of pulse lengths: The flip-angle θ of pulses is proportional to the duration (τp) and strength of the applied B1 field: θ = γB1τp It is also obvious that for nuclei with lower γ. 20 ppm) acquisition of the final spectrum with sufficient S/N and optimized spectral width • • • • • • • • • 1. ACQUISITION OF 1D SPECTRA Acquisition of simple 1D spectra comprises the following steps • • • changing the probehead Setting the correct temperature for measurement Correct positioning of the tube in the spinner and insertion of the sample into the magnet recalling a shimset with approximately correct shims for the solvent and probehead activation of the field/frequency lock system adjustment of the homogeneity of the magnetic field (shimming) recalling a parameter set for the desired experiment (tuning of the probehead) (calibration of the pulse lengths) determination of the correct receiver gain setting performing a preliminary scan with large spectral width (1H only. For calibration of proton pulses. approx. a zero-crossing of the signal is observed. and then increasing the pulse-length in small steps.LECTURE COURSE: NMR SPECTROSCOPY 1.

) 5us 1us J(C. all magnetization is converted into multiple-quantum coherences.2. The length of the proton pulse is incremented by a fixed amount for each new spectrum.LECTURE COURSE: NMR SPECTROSCOPY the 180˚ pulse: FIGURE 1. Calibration of pulse length. Resulting spectra from the sequence of Fig.37 . Third Chapter: Practical Aspects II Pg.H) 13C FIGURE 2. Pulse sequence to determine the 90° carbon pulse with proton detection When the carbon pulse is exactly set to 90˚. and no signal is observed: 15us 10 us (90 deg. 13C pulses are most easily determined on a 13C-labeled sample such as an acetate sample (labeled at the Me carbon).H) FIGURE 3. Calibration is performed in the socalled inverse-detection mode with the following sequence detecting the proton signal (which is split by the 13C coupling into an anti-phase doublet): 1H 1/2J(C.

2 Tuning the probehead: The purpose of the radiofrequency circuit inside the probe is to deliver a rotating B1 field and to detect the signal. respectively. A resonance circuit has two basic components: a capacitor (C) and a coil (or inductance. An oscillating electromagnetic field is also part of a radio and hence the resonance circuit inside the probe has much in common with the one found in a radio: L C E B FIGURE 4. L).38 . Care has be taken when solvents with high salt contents are used: Even in the case of perfect matching and tuning the pulselengths can be considerably longer (about 1. the probe has optimum sensitivity and the pulse lengths for example do not have to be measured on the sample but pre-determined values can be used instead. although this effect largely depends on the nucleus and is most pronounced for proton frequencies. Tuning and matching can be performed in different ways: (A) the reflected power Third Chapter: Practical Aspects II Pg.5 times for protons when using 150mM NaCl). Basic principle of the probehead circuit. that if the sample is introduced into the inner of the coil the dielectric constant in that part and hence the impedance of the coil changes. The reason for this is. A large influence to the tuning and matching is caused by the dielectric constant of the sample. The frequency of oscillation is ω = 1 ⁄ ( LC ) in which L is the inductance of the coil and C the capacity. When properly tuned and matched. In order to get best sensitivity and the shortest pulselengths the probe has to be • • 13C tuned to the transmitter frequency the impedance should be matched to 50 Ω.LECTURE COURSE: NMR SPECTROSCOPY 1. The energy is interchangingly stored in form of an electric or magnetic field in the capacitor or in the coil.

1. Third Chapter: Practical Aspects II Pg. the time spacing between recording of two consecutive data points (vide supra). Wobbling curve of a detuned probe (thick line). and consequently.LECTURE COURSE: NMR SPECTROSCOPY of the probe during pulsing can be minimized. Modern probes usually have two coils. so-called cryo-probes have been introduced. the thermal noise level is largely reduced (the amount of signal is even a little less than for a conventional probe) and the signal/noise in the absence of salt increased by almost a factor of four. Arrangement of coils for inverse and direct carbon detection probeheads Recently. Thereby. the minimum is moved along the horizontal axis and by matching the minimum becomes deeper. an inner coil and a outer coil. The optimum setting is shown as a dotted line. An inverse probe. and the inner one has higher sensitivity.39 510 . The dual probe has higher sensitivity for 13C.3 Adjusting the bandwidth of the recorded spectrum: The bandwidth of the spectrum is determined by the dwell time (dw). the inner coil is used for 13C: ≈ ≈ Inverse Dual 1H 13 C 13C 1H FIGURE 6. which is optimized for 1H detection has 1H frequency on the inner and 13C frequency on the outer coil. By tuning. (B) Nowadays wobbling is used during which the frequency is swept continuously through resonance covering a bandwidth of 4-20 MHz: matching tuning 490 SFO1 FIGURE 5. For these probes the RFcoil and the preamplifier is at He-temperature.

4 Data processing: Once the analog signal that comes from the coil has passed the amplifiers. care has to be taken on the newer instruments that use oversampling and digital filters. The resulting numbers which represent signal intensity vs. the signal will still be sampled but will have a wrong frequency after Fourier transformation.LECTURE COURSE: NMR SPECTROSCOPY If the sampling rate is too low. signals may easily become lost. when the offset is varied slightly. Effect of folding (aliasing) of signals. they may well be in the spectrum. frequency [f(ω)] by use of the Fourier Transformation. Folded peaks can be recognized. it is converted into a number by the analog-to-digital converter (ADC). However. The Fourier theorem states that every periodic function may be decomposed into a series of sine. On the other hand. they change their position in the spectrum. The best way to prevent folding or loosing of signals is to record a preliminary experiment with a very large bandwidth (e. Although analog or digital filter decrease the intensity of folded peaks. 30 ppm for 1H) and then adjusting offset and spectral width to cover all signals.g.and cosine functions of different frequencies: ∞ ∞ n=1 f ( x ) = a0 ⁄ 2 + ∑ an cos nx + ∑ bn sin nx n=1 The Fourier decomposition therefore tells us which frequencies are present to Third Chapter: Practical Aspects II Pg. Usually 10% are added to the edges because the audio filters tend to decrease signal intensity of signals close to the edge. In this case the frequencies outside the sampled region will be almost completely removed by the digital filters! 1. Alternatively.40 . FIGURE 7. if the spectral width is set too small. because usually they are not in-phase after adjustment of zero and first order phase correction. time [f(t)] are then converted into a spectrum that represents signal intensity vs.

that the number of points the spectrum has must be a power of 2 (2n).and sine terms corresponding to the cosine and sine transforms.LECTURE COURSE: NMR SPECTROSCOPY which amount (with which intensity).41 . the FT can be used to transform from the frequency. so that ∞ ∫ f ( t )e –∞ ∞ iωt dt = Re [ f ( ω ) ] + Im [ f ( ω ) ] ∞ = ∫ f ( t ) cos ωt dt + i ∫ f ( t ) sin ωt dt –∞ –∞ Note that in FT-NMR the signal is sampled as discrete points. Usually. The consequence of using this algorithm is. the integral is split up again into the cosine. Hence. Third Chapter: Practical Aspects II Pg. which transforms a N-point time series consisting of values dk into a N-point spectrum f: N–1 fn = 1 ⁄ ( N ) ∑ dk e k=0 – 2πikn ⁄ N The discrete FT is implemented in form of the very fast Cooley-Tukey algorithm. Using the integral form of the equation above ∞ f ( ω ) = 1 ⁄ ( 2π ) a ( t ) = 1 ⁄ ( 2π ) b ( t ) = 1 ⁄ ( 2π ) ∫ –∞ ∞ a ( t ) cos ( ωt ) + b ( t ) sin ( ωt ) dt ∫ f ( x ) cos ( tx ) dx –∞ ∞ ∫ f ( x ) sin ( tx ) dx –∞ ∞ – iωt and utilizing the Euler relation the equation can be re-written as: f ( ω ) = 1 ⁄ 2π ∫ F ( t )e –∞ dt This is the recipe to transform the signal function F(t) which for a single resonance is F(t) = e – iωt – t ⁄ T2 •e into the spectrum F(ω). the discrete FT has to be utilized. Analogously.into the time-domain: ∞ F ( t ) = 1 ⁄ ( 2π ) ∫ f ( ω )e –∞ – iωt dω Note that this transformation is the continuous FT (used for continuous functions).

Results of different functions after Fourier transformation in frequency space. The FT of a cosine-wave gives two delta-functions at the appropriate frequency (A). A gaussian function yields a gaussian function after FT. In fact the FT of (C) can be thought of a convolution of (A) and (B). Signals that have not decayed to zero are common in 2D Third Chapter: Practical Aspects II Pg. The FT gives a signal at the appropriate frequency but containing the wiggles arising from the sinc function (E). The FT of a properly shimmed sample containing a single frequency gives two signals at the appropriate frequency with lorentzian lineshape (C). A FID that has not decayed properly can be thought of as a convolution of a step function with an exponential which is again convoluted with a cosine function.42 . The FT of a step function gives a sinc function sin c ( x ) = sin ( x ) ⁄ x The sinc function has characteristic wiggles outside the central frequency band (D).LECTURE COURSE: NMR SPECTROSCOPY The next figure will summarize the FT of some important functions (the socalled Fourier pairs): A B C FT D E F FIGURE 8. The FT of a decaying exponential gives a lorentzian function with a characteristic shape (B).

If the oscillation of the signal of interest is purely cosine-modulated. 1.5 Phase Correction We have seen that the complex Fourier transform can be decomposed into a cosine transform and a sine transform that yield the real and imaginary parts of the signals. In these cases suitable window functions are used to force the signal to become zero towards the end of the FID. Therefore. In practice. Signal in pure absorption or dispersion mode Purely absorptive signals have a much narrower base. respectively. It will do the following manipulations: Re ( ∆Φ ) = – Im ( ∆Φ = 0 ) sin φ + Re ( ∆Φ = 0 ) cos Φ Im ( ∆Φ ) = Re ( ∆Φ = 0 ) sin φ + Im ( ∆Φ = 0 ) cos Φ with Re(∆φ=0) and Re(∆φ) being the real part of each data point before and after the phase correction. a phase-correction φ is needed to yield purely absorptive signals. If the signal starts as a pure sine-modulated oscillation.43 . However. the real part that is used for displaying the spectrum does not necessarily need to be purely absorptive: 1/ π T2 dispersion mode absorption mode FIGURE 9. the signal will have pure absorptive line shape. respectively. The phase of the signals after Fourier Transformation depends on the first point of the FID.LECTURE COURSE: NMR SPECTROSCOPY NMR were the number of data points sampled is restricted. so that differentiation of peaks very close to each other is easier if they have been phased to yield purely absorptive line shape. the line shape will be purely dispersive: Third Chapter: Practical Aspects II Pg. real and imaginary parts of the signal are stored in separate memory locations.

In a theoretical 1D experiment. whose amount increases linearly with the distance to the reference signal (marked with an arrow in the figure below): PC "0 th order" PC "1 st order" FIGURE 11. The first order phase correction applies a phase change. A) Ideal FID.44 . Third Chapter: Practical Aspects II Pg. B) Introduction of the pre-scan delay to enable pulse power ring-down. The linear dependence of the phase of the signals has a more complicated reason. The relative phase of the magnetization with respect to the receiver coil determines the phase of the signal after Fourier transformation There are two different types of phase-correction. What is the origin of the varying phase in the spectra? The zero-order arises because the absolute phase of the signals at the detector depends on the cable lengths etc. However. acquisition of the FID would start immediately after application of the pulse. Top: The zero order phase correction changes the signal phase for all signals by the same amount. Lower: For the first order phase correction the applied correction depends on the frequency difference to the reference signal (marked by an arrow). in a real experiment there is a protection delay (called de on Bruker instruments). to wait for the pulse ring-down (pulsing and detection of the signal is done on the same coil.LECTURE COURSE: NMR SPECTROSCOPY t=0 t=0 FIGURE 10. so that there must be a protection delay after the pulse): A B DE FIGURE 12. The zero-order phase correction applies the phase change to all signals in the same way.

LECTURE COURSE: NMR SPECTROSCOPY During the protection delay de. (A) normal FT with phase correction. When spectra cannot be phased a magnitude calculation or the power spectrum (PS=M2) is used: Third Chapter: Practical Aspects II Pg. All other but folded signals will then be in phase. To adjust the phase. The precession frequency depends on the offset of the signal frequency. the spins start to precess. the distance of the signal from the middle of the spectrum. define a signal at one end of the spectrum as the reference phase. e. go into the phase correction mode. FIGURE 14.g.45 . use the zero-order phase correction to phase it to absorption and then use the first order phase-correction to phase the signal at the other edge of the spectrum. (C) Magnitude calculation.(B) Power spectrum. The first-order phase correction reverses the phase change due to shift evolution during de and is therefore linearly dependent on the frequency of the signal: A B ≈ ≈ B FIGURE 13. Precession of spins with different frequencies during the pre-scan delay.

Both. Provided that the FID has decayed to zero towards its end it is useful to Third Chapter: Practical Aspects II Pg. Fast transverse relaxation may also be caused by field inhomogeneity (inhomogenous broadening).LECTURE COURSE: NMR SPECTROSCOPY M = Re + Im 2 2 The magnitude calculation yields much broader peaks at the base. the signal can not be digitized properly. Left:Effect of increasing number of data points after FT.6 Zero-filling and the resolution of the spectrum The resolution that can be obtained from a spectrum is determined by two factors: • the natural line width that is related to the transverse relaxation time (homogenous broadening) and which is due to efficient dipolar coupling of the spins. 1. If the number of points after FT (on Bruker instruments the parameter SI) is smaller than the number of acquired data points (on Bruker instruments the parameter TD).46 . The theoretical resolution obtainable from the FID can be calculated as Res = SW (Hz) / TD neglecting relaxation effects. the number of points which are used to digitize the signal. Right: Spectrum without zero-filling (lower trace) and after zero filling with 5*TD (upper trace). magnitude and power calculation lead to a severe loss in resolution. and the resolution is very low: • FIGURE 15.

S/N is rarely a problem. the resolution is determined by the amount of signal which remains towards the end of the FID. A long transverse relaxation time leads to a slowly decaying. Conversely. When the FID has not decayed to zero. Application of the window function amounts to multiplying the FID data point dk by dk’=dk*ak in which k runs from 0 to TD (the total number of data points). but good resolution is required. fast relaxation to a quickly decaying FID. and data could be multiplied with an increasing exponential (em with LB< 0).LECTURE COURSE: NMR SPECTROSCOPY append zeros to the FID. FIGURE 16. e. adding more zeros gives only cosmetic effects but does not add more information. Any data manipulation. Adding zeros once (that means making si = 2*td) gives a significant improvement in resolution. Data processing of 13C spectra therefore usually is performed with exponential multiplication with a decaying exponential (em with LB>=1).7 Resolution enhancement and S/N improvement The resolution is determined by the transverse relaxation time T2 of the spins.47 . In 13C nmr. Top: Resulting FT of a FID that did not decay to zero in comparison to a fast decaying FID (bottom) 1. multiplying the FID with a increasing exponential (et/x) will improve the resolution. whereas resolution is rarely a problem. In 1H nmr. S/N is comparably bad. There are number of so-called window functions that are aimed at either improving resolution or S/N and their effect on a spectrum is shown in the figure below: Third Chapter: Practical Aspects II Pg. Therefore. Most manipulations that improve resolution lead to a loss in S/N.g. the S/N is determined by the amount of signal at the beginning of the FID. adding zeros introduces a step function that causes sinc-type artifacts (wiggles).

the maximum of the Third Chapter: Practical Aspects II Pg. whereas gb determines the center of the maximum of the gaussian curve.(F)90 degree shifted sine-bell.7. When gb is set 0. frequently used window functions are 1.1 Exponential multiplication: The line broadening constant lb can be positive (sensitivity enhancement) or negative (resolution enhancement).(E) 45 degree shifted sine-bell. but LB=1. It is mainly used for processing 13C data. (D) sinebell.2 Lorentz-to-Gauss transformation: This a combination of exponential and gaussian multiplication.LECTURE COURSE: NMR SPECTROSCOPY FIGURE 17. Important.48 . ak = e πlbk∆t •e – gb ( k∆t ) 2 The factor lb determines the broadening. for which sensitivity enhancement is desired but where resolution is rarely a problem (use lb = 1-2 Hz).7. (A) raw spectrum after FT. (B)Multiplication with exponential. A lorentzian line of width W will have a width of W + LB Hz after apodization.(C) as (B). ak = e – πlbk∆t 1.LB=5.33.

A pure sine-bell is used for such experiment in which the FID does not have maximum signal in the first points (such as COSY) or for improving magnitude data (HMBC): FIGURE 19. which has a narrower base: FIGURE 18. the Lorentzian lineshape is converted into a gaussian lineshape.7. Left: Lorentzian lineshape. However. Left: FID of COSY with shifted sine-bell.3 Sine-Bell apodization: Sine-bell apodization is frequently used in 2D NMR processing. By this multiplication.49 . 1. Shifting the sine-bell by 90 degrees (a cosine-bell) means that the function used starts of the maximum of the first lobe and extends to zero towards the end of the FID. HSQC). Right: Gaussian lineshape.Right: FID of NOESY with cosine-bell Third Chapter: Practical Aspects II Pg. such a function also sets the first data points to zero and hence leads to severe loss of S/N and introduces negative wiggles at the bases of the signals in addition to a strong improvement in resolution. This is usually used for FIDs that have maximum signal in the first data points (NOESY. A pure sinebell corresponds to the first half-lobe of a sine-wave and multiplies the FID such that it brought to zero towards the end.LECTURE COURSE: NMR SPECTROSCOPY function occurs after 1/3 of the acquisition time.

Such a problem can be circumvented if the FID is multiplied with a function that decays to zero at the end of the FID. This is the case. that the receiver gain has been set too high. An often encountered problem is truncation of the signal.g.8 Baseline Correction Baselines that are not flat are a major problem in FT-NMR. Different window functions. peak-picking routines need a threshold for minimal signal intensity and such peak-picking for tiny signals is not possible when the baseline is not flat. those spectra are difficult to phase. which means. that means. or when one very slowly decaying line is present in the spectrum. If the signal intensity is larger. an decaying exponential or a cosine bell function. an exponential and a square function. that the signal is not sampled until it has completely decayed. π/4. Secondly. in 2D NMR. π/4. e. in spectra with baseline roll small signals may not be recognized.g. The contribution from the square function will introduce wiggles at the base of the signals which are originating from the sinc function. A frequent source is receiver overload.LECTURE COURSE: NMR SPECTROSCOPY The influence of the parameters on the window functions is shown below: FIGURE 20. baseline distortions are caused by distortions of the first points of the FID. when the data matrices. that means that the FID must fit into the acquisition window completely. B) Lorentz-Gaussian transformation with LB=-5 and GB =0. e. C) Sine-bell shifted by 0. Firstly. the first points of the FID are clipped: Third Chapter: Practical Aspects II Pg. the number of data points. On the Bruker instruments. In general. 1.g. D) Sine-bell squared shifted by 0. π/2.50 . 0.3.1.5Hz. π/2. e. There are many reasons for bad baselines.3. must be kept to a reasonable low value. Then the signal can be described by a superposition of an oscillation. spectra with non-flat baselines give wrong integrals. π/8. π/8. A: exponential multiplication with LB=1. The ADC (analog-to-digital converter) can only digitize a certain maximal signal intensity.5 Hz. Furthermore. 0. Thirdly.

lower trace: spectrum after FT of an FID with correctly adjusted receiver gain. Provided that S/N is good the number of points can be doubled with LP (or the measuring time can be halved to achieve the same resolution).51 . A wrong first data point leads to an offset. Frequently. etc. Other baseline problems. Such a baseline cannot be corrected. and the measurement must be repeated with a lower receiver gain setting.LECTURE COURSE: NMR SPECTROSCOPY FIGURE 21. Predicting more points severely changes the lineshape of the signals and is not recommended. In principle. spectra with (a few) wrong first data points can still be used.9 Linear prediction: For exponential decaying signals that are sampled at constant spacing (as is usually the case for NMR) new data points can be predicted. Especially in the case of the Third Chapter: Practical Aspects II Pg. The reason behind this is that one can assume that new data points can be represented as a fixed linear combination of immediately preceding values. 1. on Bruker machines either automatically (with the command abs) or manually. Top: Spectrum after FT of a clipped FID. like baseline-drift (non-horizontal but flat baseline) or baseline-curvature can be corrected. if linear back-prediction of the first data points is used. LP provides a means of fitting a time series to a number of decaying sinusoids. LP gives very good results for COSY and HSQC data. Oversampling has shown to reduce baseline problems in the directly sampled frequency dimensions dramatically. a wrong second one to a half-wave. one can recognize which data point is distorted from the shape of the baseline. a wrong third one to a full wave.

FIGURE 22. In the case of constant-time experiments. Linear prediction in these cases not only increases the resolution but also increases the amount of signal! With modern computing power it is performed rather quickly and the results can be astonishing good. Remember that in order to double the resolution in the indirect dimension the number of experiments in a 2D spectrum and hence the acquisition time has to be doubled. ct-HSQC spectra (A) 240 points. antiphase signals cancel when the resolution is low.LECTURE COURSE: NMR SPECTROSCOPY COSY. Third Chapter: Practical Aspects II Pg. Linear prediction may achieve the same goal in a few seconds.52 .(D) mirror -image LP to 240 points.(B) 64 points. mirror-image linear prediction may be applied which is capable to predict N points to 4*N points.(C) LP to 128 points.

The direction of the induced field is opposed to the static field and acts to decrease the strength of the latter: Fourth Chapter: Chemical shifts and scalar couplings Pg.LECTURE COURSE: NMR SPECTROSCOPY 1. The static magnetic field Bo causes the electrons to precess about the axis of the magnetic field. the field strength to be considered is not exactly the strength of the applied magnetic field in vacuo but is locally modified by the electronic environment of the nucleus. What is really important is the effective field strength at the nucleus site. a current is created that itself builds up a magnetic field. As we have seen before.53 . THE CHEMICAL SHIFT: Soon after the discovery of the phenomenon of nuclear magnetic resonance scientists realized that more than a single line was observed for protons in a organic molecule such as ethanol. this splitting of lines is caused by the chemical shift due to the Zeeman interaction and to scalar spin. Many different mechanisms are known that may influence the exact strength of field at the nucleus: σ = σdia(local) + σpara(local) +σm + σrc + σef + σsolv Herein is • • • • • • σdia the diamagnetic contribution σpara the paramagnetic contribution σm the neighbor anisotropy effect σrc the ring-current contribution σef the electric field effect σsolv the solvent effect 1. In liquid (isotropic) phase. the resonance frequency depends on the strength of the applied static field and on the gyromagnetic ratio of the nucleus: ω = γB However.1 The diamagnetic effect: The nucleus is surrounded by an electron cloud.spin couplings. Thereby.

2 The paramagnetic term: The paramagnetic term serves to correct for the disturbance of the spherical rotation of electrons. It is therefore the dominant term for proton shifts but less important for the heavier nuclei. This may be caused by the formation of bonds. The diamagnetic shielding describes the behavior of spherically distributed electrons such as electrons from the s-orbital of protons. r the distance of the electron from the nucleus. the paramagnetic term may be calculated by finding the way by which the electron wave functions are modified by the magnetic field. This effect is called the Lamb Shift. 1. Quantummechanically speaking. One important statement of this so-called Biot-Savart Law is that the electron density at larger distances from the nucleus is of importance for the counter-acting field.LECTURE COURSE: NMR SPECTROSCOPY Bo FIGURE 1. It can be calculated as ∞ σ iso = µ 0 e ⁄ 3m e • ∫ rρ ( r ) dr 0 2 in which ρ(r) is the electron density. Such a modification of the wave function takes place because properties Fourth Chapter: Chemical shifts and scalar couplings Pg.54 . e the charge and me the mass of the electron.

This is obvious from the huge shift ranges (e. lowest unoccupied molecular orbital) are mixed into ground state wave (esp. the HOMO. Reactivities of compounds are often related to HOMO/LUMO energy separations and chemical shifts have therefore been successfully used to screen for reactive compounds. Since the paramagnetic shift is inversely proportional to the energy gap. The shift range due to the paramagnetic contribution is larger than for the diamagnetic shift. the shift is large when the gap is small. highest occupied molecular orbital) functions through application of the static field.55 . The calculation of the diamagnetic shift is rather involved and requires the exact knowledge of the excited wave functions. Substituents influence the chemical shift because they change the electron denFourth Chapter: Chemical shifts and scalar couplings Pg.LECTURE COURSE: NMR SPECTROSCOPY of exited states (contributions from the LUMO. Very low-lying ground-state wavefunctions are usually paired with rather high lying excited state wave functions such that the resulting energy separation is comparably large.g. The electron distribution in such an excited state wavefunction is very different from that encountered in the ground state giving rise to a large change in the shielding: LUMO Bo HOMO FIGURE 2. The paramagnetic term requires non-spherical electron distribution (a nonvanishing angular momentum) and can hence only be applied to nuclei that have non-s orbital electrons. For 13C it is given as σi para = ( µ 0 µ B ) ⁄ 2π∆E 〈 r 〉 Q i + 2 –3 i≠j ∑ Qj In this formula. 15 ppm for 1H). ∆E is the energy difference between HOMO and LUMO . Mixing of excited state wavefunction into ground-state wavefunctions through the Bo field. several thousand ppm for 57Fe compared to approx. It is the dominant term for all nuclei other than protons. r the radius of the 2p orbital and the Q describe electron densities and bond orders.

Due to the shielding the direction of the effective field Beff may deviate from the direction of the static Fourth Chapter: Chemical shifts and scalar couplings Pg. This is fairly evident from a comparison of a oxygen and a carbon bound proton: C e.1 ca 1-2 ppm O H e.56 . to external field The chemical shielding is described by the chemical shift tensor.= 3. mat. Shielding of carbonyl carbon in dependence of orientation of zz-axis w.= 2.= 2.5 H e.) The zz axis is usually taken as the axis with the largest shielding.5 e. For sp2 carbons such as aromatic or carbonyl nuclei the shielding highly depends on the orientation of the bond relative to the static field: σzz σzz C O C O FIGURE 4.LECTURE COURSE: NMR SPECTROSCOPY sity at the proton nucleus via inductive effects. Dependence of chemical shielding upon orientation of carbonyl bond toi the external field 1. The magnitude of the shielding therefore depends on the relative orientation of the nucleus with respect to the static field.1 ca 4 ppm FIGURE 3. which transforms the static field into the effective field (see add.= 2. For sp3 carbons the nuclei are tetrahedrally coordinated and the electron distribution is almost invariant under rotation.r.3 Chemical shift anisotropy: The distribution of the electrons about the nucleus is usually non-spherically.

4 Magnetic anisotropy of neighboring bonds and ring current shifts: Some types of neighboring bonds create an additional magnetic field which is anisotropic in space. The π electrons of the triple bond form an electron cloud that extends around the bond axis in form of a tube. Such anisotropies can dramatically change the appearance of proton spectra. An example is a triple bond. in order to give substantial effects the influenced protons Fourth Chapter: Chemical shifts and scalar couplings Pg. when rotation is hindered. Left: Coordinate system used for the chemical shift tensor. Chemical shift anisotropy values can be measured from solid-state NMR. However. Right: Direction of the static and the effective field. However. the line is significantly broadened. σzz Bkorr Bo Beff σxx σ yy FIGURE 5. The value of the chemical shift for the isotropic case can be taken as 1/3 of the trace σ iso = 1 ⁄ 3 ( σ xx + σ yy + σ zz ) 1. They usually increase the dispersion of proton spectra. as is the case in the solid state. and is the major relaxation mechanism for non-protonated carbons. The magnetic field forces the electrons to rotate about the bond axis creating a magnetic field whose direction is along the bond axis and which again counteracts the static field.LECTURE COURSE: NMR SPECTROSCOPY field Bo. A similar counteracting field is formed in the πcloud of aromatic systems. Since the molecule rotates quickly in solution the observed chemical shift is a average over the shifts coresponding to the different orientations (isotropic chemical shift). In liquids this effect contributes to relaxation. xx and yy orthogonal to zz.57 . The zz axis points along the value of the largest shielding.

Fig:Left: Anisotropy from a benzene π system. Aliphatic Protons that are fixed in space above the plane of an aromatic ring can be shifted to values below 0 ppm. Fourth Chapter: Chemical shifts and scalar couplings Pg. those in the plane to values higher than 10 ppm.58 . Bo Bo C C e- e- FIGURE 6.LECTURE COURSE: NMR SPECTROSCOPY must be sterically fixed in relative to the anisotropic group. The following figure shows regions of increasing (+) or decreasing (-) field: + + FIGURE 7. depending on the exact postion of the proton. Right: Anisotropy from a triple bond. Chemical shift anisotropies of various π-systems - - C C + - + + C C . Therefore. The direction of the induced electron flow is indicated below The observed shifts can be either up-field or down-field. This is the case for folded proteins that do adopt a unique structure.C + C - These effects can be dramatically. one can sometimes judge from the signal dispersion of 1D proton spectra whether a protein is folded or random coil.

Their shift is highly temperature. This is used in protein NMR to identify β-sheets or α−helices that display extended hydrogen bond networks.59 . Protons that are hydrogen bonded usually be easily recognized from their shift. H-bond and will therefore be down-field shifted. The hydroxyl group at the top of the molecule is part of a sym.6 Hydrogen bonds: Hydrogen bonds decrease the electron density at the involved proton site and hence leads to a high-frequency shift. 1.5 Electric field gradients: Strongly polar groups create intramolecular electric fields. Protons that are part of hydrogen bonds do exchange much more slowly with labile solvent deuterons and can therefore be differentiated from others. 3 O H O HO FIGURE 8. Fourth Chapter: Chemical shifts and scalar couplings Pg. the effect depends strongly on the distance and orientation. 1. The effect is especially pronounced for symmetric hydrogen bonds (those in which the distance of the proton is equal to both acceptors). concentration and solvent dependent. As can be seen from the formula.LECTURE COURSE: NMR SPECTROSCOPY The chemical shift anisotropy for a triple bond can be calculated as ∆σ = 1 ⁄ 3r [ ( χ II – χ ⊥ ) ( 3 cos θ ) ]1 ⁄ ( 4π ) where theta is the angle with respect to the bond axis. This has the effect of distorting electron density in the rest of the molecule and will hence influence the chemical shifts. r the distance to the centre and χ the magnetic susceptibilities parallel and perpendicular to the bond axis.

proton coupling is removed rapidly (self-decoupling). Such selective effects may be the case when not all parts of the molecule can be accessed by the solvent. also known as shift reagents. Suitable solvents for causing large changes in chemical shifts are benzene or acetone. Thereby. the splitting due to the electron. a 2 ppm shift range for aliphatic protons can be dispersed over 6 ppm after addition of the shift reagent. the chemical shift can also be influenced. When paramagnetic impurities are contained in the sample. the lines are usually considerably broadened for solvent excessible protons. 1.7 Solvent effects: It is very important to realize that different solvents may have different effects on the chemical shifts. This effect is moderate.8 Shifts due to paramagnetic species: Paramagnetic compounds have unpaired electrons. Quite often an overlapping signal can be resolved when changing the solvent. This effect is especially pronounced when benzene selectively complexes parts of the molecule due to the ring-current effect from the aromatic ring. since electron density of the unpaired electron at the observed nucleus (which is usually not in the same molecule) is required. which may completely change the appearance of a spectrum that has been acquired in chloroform. 2. serve to disperse proton spectra. so that comparably sharp lines can be observed. This orientation rapidly changes in solution due to molecular tumbling and the dipolar coupling there- Fourth Chapter: Chemical shifts and scalar couplings Pg. This is so because the dipolar coupling depends on the orientation of the connecting vector to the static field. Paramagnetic reagents.LECTURE COURSE: NMR SPECTROSCOPY 1. Since relaxation times of electrons are very short.60 . The mechanism is Fermi-contact interaction (see section scalar couplings) between the nuclear spin and the unpaired electron. SCALAR COUPLINGS: Two types of interaction between spins are known: • • dipolar coupling scalar coupling The contributions from dipolar coupling usually cannot be observed in isotropic (liquid) phase. However.

Electrons that occupy an orbital that has a non-vanishing electron density at the nucleus (such as s-electrons) have the electron spin antiparallel to the nuclear spin (Hund's rule). The second nuclear spin can now have its spin parallel or antiparallel to the spin of the second electron depending on whether it is in the α. ∆T is the triplet excitation 2 2 2 2 2 Fourth Chapter: Chemical shifts and scalar couplings Pg. The scalar coupling leads to a splitting of resonance lines. However.61 . Is the atom bonded to another atom. then the two sorbitals of the separate atoms form a σ-orbital.LECTURE COURSE: NMR SPECTROSCOPY fore averages to zero. The effect is mediated via the electrons and its magnitude therefore rapidly decreases when the number of intervening bonds increases. |ΨA(0)|2 is the electron density at the site of the nucleus A and cA the coefficient of the contribution of the atomic orbital A to the σ MO. it can be observed in the solid state or in liquid crystals. The magnitude of the coupling is expressed as the scalar coupling constant and can be calculated as: J = ( 2µ 0 g e µ B ⁄ 3 ) γ A γ B Ψ A ( 0 ) Ψ B ( 0 ) c A c B ( 1 ⁄ ∆ T ) where γA and γB are the gyromagnetic ratios of the involved nulcei.or β.state. The basic mechanism that propagates the coupling is the Fermi-contact interaction. Spin states of nuclear (red) and electron (blue) spins for hydrogen atom (a) and singlet hydrogen molecule (b) and triplet hydrogen (c) with corresponding energy diagram. which is occupied by two electrons with antiparallel spin (Pauli principle). This effect describes the coupling between the nuclear and the electron spin: E b c a a c b ∆E= hν = hJ FIGURE 9. The antiparalell alignment is energetically favourable and hence gives a signal at lower frequency.

1 Direct couplings (1J): In order to be able to detect scalar spin.514 .LECTURE COURSE: NMR SPECTROSCOPY energy that measures the energy required to promote an electron from the singlet into the triplet spin state (parallel alignment): ∆T FIGURE 10. meaning that they don’t have the same chemical shift. This is very clear from the 1J 1H. When hydrogen is substituted by deuterium. Singlet-triplet transition The scalar coupling constant is usually given the symbol nJ. the magnitude of coupling depends on the amount of overlap of the involved electron orbitals.spin couplings it is necessary that the two protons are not isochronous. The one-bond coupling constant usually has a positive sign.13C coupling constants which can be roughly categorized as: •sp3: 140 Hz •sp2: 160Hz •sp: 250 Hz The sp orbital has the highest content of s-character and hence gives the largest coupling. in which n indicates the number of intervening bonds. The s-character of orbitals depends heavily on the hybridization of the involved nuclei.62 . As we will see later. the corresponding coupling to another proton is scaled by the factor γD/γH=1/6. The coupling also depends on the gyromagnetic ratios of the involved nuclei. Therefore. Fourth Chapter: Chemical shifts and scalar couplings Pg. which are defined as: κ ik = ( J ik ⁄ h ) ( 2π ⁄ γ i ) ( 2π ⁄ γ k ) 2. the couplings are sometimes reported in form of the reduced couplings.

63 .2 Geminal couplings (2J): Geminal proton couplings largely depend on the hybridization of the involved carbon nuclei: H2C H 109 H H 120 H .4. Various geminal couplings +2. has been successfully exploited to determine the stereochemistry of compounds.3 Hz H2C=C H 120 H -12.3 Vicinal couplings (3J): Vicinal couplings display a characteristic dependence upon the involved dihedral angle: 3J (Hz) H b φ H a φ/rad FIGURE 12.9 cosφ + 3.83 cos2φ This relationship.0 cosφ + 5 cos2φ for protons.1.5 Hz To be able to observe these couplings the geminal bonded protons need to be diastereotopic in order to give separate proton frequencies.81 .0.13C couplings a similar equation has been suggested: 3J= 3. also known as the Karplus relation. Of course. right: Definition of dihedral angles according to the relation: 3J= 7 . For 1H.4 Hz FIGURE 11. 2.LECTURE COURSE: NMR SPECTROSCOPY 2. it Fourth Chapter: Chemical shifts and scalar couplings Pg. Left: Karplus curve.

b ≈ 11 Hz R' Ha R Hb R' 3 Ja . The angular dependence comes into play. Vicinal couplings of systems with hindered rotation about C-C bonds For example. rapid averaging of dihedral angles (rotatable bonds) leads to averaging of coupling constants.b ≈ 18-19 Hz H2e H2a 3 Ja. in sugars the vicinal coupling between the anomeric proton and the neigbouring proton determines whether the sugar is α or β. e = 2-5 Hz FIGURE 13.g.g. Overlap of adjacent orbiatals for φ=0° (left) and φ=90° (right).e = 2-5 Hz 3 Ja. e. a = 10-13 Hz 3 Je. which for that case corresponds to the arithmetic mean from the mainly populated rotational states.LECTURE COURSE: NMR SPECTROSCOPY requires the dihedral angle to assume a certain value fixed over time.64 . Open-chain aliphatic compounds therefore mostly display vicinal couplings of about 7 Hz. Therefore. gauche and trans rotamers. The reason for the dependence of the vicinal coupling on the dihedral angle is the follwoing: The scalar coupling is propagated via electrons. the coupling is very useful to determine the stereochemistry or derive structural constraints: H1a R Ha Hb 3 Ja. because the dihedral angle determines how large the overlap of the molecular orbitals and thereby the efficiency of transfer is: φ FIGURE 14. cyclic systems or macromolecules with defined secondary structure such as proteins). For systems where the bond cannot be rotated (e. Fourth Chapter: Chemical shifts and scalar couplings Pg.

LECTURE COURSE: NMR SPECTROSCOPY Further effects on the vicinal couplings are: • • • electron negative substituents decrease 3J increasing HCC bond angles decrease 3J increasing C--C bond lengths decrease 3J 2.4 Long-range couplings: 4J couplings are rarely observed.g.spin couplings: In principle. cisoid and transoid couplings are of similar magnitude.6 The number of lines due to scalar spin. each coupling doubles the numbers of lines.65 . Therefore. However. spin-correlation between σ and π electrons is required: π H C σ H H H H H H C FIGURE 16. Scalar couplings involving σ. some lines overlap. π electrons cannot propagate scalar couplings because π orbitals have nodes at the position of the nuclei.5 Couplings involving π electrons: In principle. The orientation of the double bond in 4J couplings is not important. e. For saturated systems they require the atoms to be coplanar and in zigzag (W) conformation: H H4e H2 e H FIGURE 15.π transfers Since π electron systems are highly delocalized. Systems with 4J couplings. when couplings are of similar magnitude. 2. these interactions can be propagated over many bonds. In the absence of geminal couplings (no diastereotopic protons) all couplings are usually due to vicinal Fourth Chapter: Chemical shifts and scalar couplings Pg. 2.

Jac Jab Jac J ab J ac Jac Ωa Ωa FIGURE 17. In this case the total number of lines of a single resonance due to the coupling with N neighbouring protons is N+1.LECTURE COURSE: NMR SPECTROSCOPY protons. intensities 0 1 2 3 4 5 6 0 1 2 3 1 (singlet) 2 (doublet) 3 (triplet) 4 (quartet) 5 (quintet) 6 (sextet) 7 (septet) 1 (singlet) 3 (triplet) 5 (quintet) 7 (septet) 1 1:1 1:2:1 1:3:3:1 1:4:6:4:1 1:5:10:10:5:1 1:6:15:20:15:6:1 1 1:1:1 1:2:3:2:1 1:3:6:7:6:3:1 Fourth Chapter: Chemical shifts and scalar couplings Pg. In cyclic or structurally well-defined compounds where the couplings may be much different the total number is 2(N-1) .66 . In open-chain compounds single bond dihedral angles are rotationally averaged so that all vicinal couplings are around 7 Hz (vide supra)´. Coupling of a proton a with two other protons b and c for the case of different (left) or similar (right) couplings. The intensities of the lines in the case of overlapping lines (similar magnitude of couplings) can be derived from the coefficient in the Pascal triangle: Number of coupled nuclei I=1/2 I=1 Number of lines rel.

8 ppm 5. In order to derive coupling constants or chemical shifts from strongly coupled spins these parameters may not be extracted from the spectrum but have to be derived from a simulation and comparison to the measured spectrum. However. 1(3) and 0(4). Fourth Chapter: Chemical shifts and scalar couplings Pg.8 ppm 4. Whereas in the limit of weak coupling a spin-flip of spin A does not cause spin B to flip there is a probability to do so in the strong coupling case. For the case of two dublets due to two strongly coupled protons the inner lines are larger then the outer ones ("roof effect"). Thereby it is possible to decide which signals are coupled with each other. when the chemical shift difference is not very large compared to the scalar coupling constant (∆δ> 10 J).9 4.9 4. JBX =4Hz) 1 2 3 4 5.0 ppm FIGURE 18.0 4. AB−System (JAB =10Hz) ABX−System (JAB =10Hz. The simulations were calculated using νA−νB/J=15(1). A practical consequence is that a resonance line cannot be referred to belong to a spin A or B. these rules do not apply anymore. In the case of the ABX system the X-part is shown separately.7 Strong coupling: The rules for line multiplicities and intensities described above are only valid in the case of weak coupling.LECTURE COURSE: NMR SPECTROSCOPY 2. In the strong-coupling case spin properties are mixed. Second order effects depending on the chemical shift difference. 3(2).0 4.67 . JAX =6Hz.

left: equilibrium state. The corresponding time constant of that process is called T1. longitudinal relaxation (or T1 relaxation) that describes the return of the zcomponent of longitudinal (z-)magnetization to its equilibrium value. β -state is governed by the Boltzman distribution: # (α ) # (β ) Sixth Chapter:Relaxation Pg. What relaxation describes is the behaviour of magnetization which is defined as the sum of the magnetic moments from all spins. the spins are uncorrelated in phase such that no transverse magnetization exists. Analogously. The process that brings the spins back to thermal equilibrium is called relaxation: Bo=z Bo=z y x y x FIGURE 1. Phenomenologically. to understand the mechanisms of relaxation we will look at the fate of individual spins. transverse relaxation (or T2 relaxation) that describes the decay of transverse (x. phases are correlated It is important to note that a particular spin can be only in either the α. RELAXATION: As stated in the first chapter thermal equilibrium is a state in which the population of α. 2. However. Furthermore. However.68 = e − ( Eα − E β ) / kT .y) magnetization.LECTURE COURSE: NMR SPECTROSCOPY 1. when RF pulses are applied the state of the spins is pertubated away from equilibrium distributions. relaxation is categorized into 1.or the βstate.and β-states corresponds to the Boltzmann distribution. 1.1 T1 relaxation: The equilibrium distribution of α vs. the corresponding time constant is called T2. right: non-equilibrium state.

1. Return of the z-component of magnetization to the equilibrium value. It is often referred to as spin. T1 relaxation is an enthalpic process. Note that the vectors shown in the figure above represent the magnetization vectors rather than magnetic moments from individual spins. The initial state may have been created through population inversion arising from an 180˚ pulse.LECTURE COURSE: NMR SPECTROSCOPY Since α and β -states correspond to different energies changing the relative populations of these states changes the energy of the system.69 . Degassing the sample will remove paramagnetic oxygen which otherwise facilitates T1 relaxation. T2 relaxation is merely a entropic process.5 to a few seconds. Longitudinal magnetization decays exponentially according to Mz (t ) = M z (t0 ) e − t / T 1 The T1 relaxation time determines the pulse repetition rate. T1 times for quadrupolar nuclei (I > 1/2) can be rather short (ms range).spin relaxation: Sixth Chapter:Relaxation Pg. Therefore. The surrounding of spins is often called the lattice and hence T1 relaxation is often referred to as spin-lattice relaxation: z y x z y x z y x z y x z y x FIGURE 2. Since dephasing in the spins does not cause any changes in the relative population of α− and β-state. Therefore. it is not changing the energy of the system. the delay that has to be inserted between individual scans. degassing samples is useful when measuring small NOE effects. The energy is transferred to or taken from other spins. T1 times for protons are in the range of 0.2 T2 relaxation: The transverse relaxation determines how fast phase coherence between spins is lost.

Top: Dephasing of transverse coherence leading to T2 relaxation.LECTURE COURSE: NMR SPECTROSCOPY X X X X X X y y y ∆t y y y I Det I Det e. It can be shown that the probability for spontaneous relaxation is far too low to account for it. T1 relaxation takes place if spins change from the α.t/T 2 t t FIGURE 3. Lower: Influence of T2 relaxation on the appearance of the FID. 1. The T2 time and hence the linewidth also determines the theoretically achievable resolution. Once the transverse relaxation time T2 passed by transverse magnetization has decayed to 1/e of its original value: M x . The shorter T2 the broader the signals. y (t ) = M x . The linewidth at half height of the signals can be expressed as: ∆ν 1 / 2 = 1 πT2 There is no reason to sample the signal for times much longer than T2 because only noise will then be added to the FID. relaxation is caused by additional fields that happen to have exactly the frequency that corresponds to the required transition. For example.to the β-state or vice versa.70 . Sixth Chapter:Relaxation Pg.3 The mechanisms of relaxation: In principle the spin system may return to equilibrium via stimulated relaxation (some kind of energy exchange process that initiates relaxation) or by spontaneous relaxation. y (t0 ) e − t / T 2 The transverse relaxation time determines the linewidths of the signals. Mechanistically.

LECTURE COURSE: NMR SPECTROSCOPY The energy difference between these states correspond to a specific frequency ∆E = Eα − Eβ = hν and this frequency matches to a field fluctuating at ν = γB 2π There are two major mechanisms by which these fluctuating fields are formed: • • dipole-dipole interaction between two different spins chemical shift anisotropy Both processes are connected to the movement of spins in space due to overall tumbling of the molecules or due to internal motions. For protons that relax mostly through dipole. It is often found that isolated protons (those that do not have other protons on the neighbouring carbons) display incorrect integrals in 1D proton spectra. Left: definition of the vector connecting two spins and its orientation φ with respect to the external field. Dipole-dipole induced relaxation: Spin A close in space to spin B causes a (small) dipole moment at the nucleus B: Bo 1H Bo r φ 15N φH N FIGURE 4. Right: Overall tumbling changes φ.71 . This is due to the fact that T1 relaxation for these protons is Sixth Chapter:Relaxation Pg. Through molecule tumbling the angle φ permanently changes its magnitude causing a fluctuating field. The induced local field can be expressed as: Bloc = µ (3 cos2 φ − 1) r3 The magnitude of the induced field depends on both the distance of the two interacting nuclei and on the angle formed between the interatomic vector and the static field.dipole interaction with other protons the transverse relaxation time T2 and thereby its linewidth is determined by a) how far the next protons are in space and b) the overall tumbling time of the molecule.

4 Other relaxation mechanisms: Any particular event that will cause a fluctuating field at the site of the nucleus may contribute to relaxation provided that it delivers spectral density at any of the possible NMR transitions. The distance between geminal protons depends on the bond geometries but for all other protons it is determined by the structure. a method that depends on relaxation properties of spins and helps to elucidate the three-dimensional arrangement of protons (see next chapter).spin coupling to another nucleus fluctuates rapidly.g.72 . The line-broadening of signals due to slow overall tumbling is obvious from the linewidth of spectra from large proteins that display very broad lines. occurring for sp2 hybridized carbon nuclei) will cause a fluctuating field upon rotation of the nucleus which serves as a efficient source for relaxation: σzz σzz C O C O FIGURE 5.4.1 Chemical shift anisotropy (CSA): Non-spherical distribution of electron density (e. It is also the major relaxation source for non-proton bearing carbon nuclei such as carbonyl or olefinic carbons.4. Dependence of electron shielding for carbonyl carbons on the orientation of the external field relative to the pz orbital The efficiency of CSA relaxation increases with the square of the magnetic field and is the major relaxation source for amide nitrogen nuclei at fields higher than 600 MHz. 1. An important application therefore is the NOE effect.LECTURE COURSE: NMR SPECTROSCOPY inefficient and therefore these protons do not have completely relaxed in between different scans.2 Scalar relaxation: Relaxation may also be induced when the scalar spin. 1. 1. This could be caused by • chemical exchange of the coupled nucleus (scalar relaxation of the first kind) Sixth Chapter:Relaxation Pg.

4. 1. 1. An practical example is the case of nitrile carbons in which the carbon is mostly coupled to the quadrupolar 14N nucleus and is usually significantly broadened.3 Quadrupolar relaxation: Nuclei with a spin > 1/2 rapidly relax under the influence of a electric field gradient. This is seen for 14N. Scalar relaxation is much more likely to effect T2 than T1 relaxation times. carbonyl nuclei may have T1's of 20-30sec) to allow faster pulsing.5 Interaction with unpaired electrons: The interactions can be either of dipolar or scalar nature.4. This effect is usually of minor importance. Therefore.4. Scalar relaxation of the first kind is observed for protons coupled to quickly exchanging hydroxyl protons. The time-dependence of the motions is of prime importance since it determines the frequency at which the induced local fields fluctuate and therefore whether they may contribute to relaxation or not.73 . Scalar relaxation of the second kind is frequently encountered for protons coupled to quadrupolar nuclei. 1.4 Spin-rotation relaxation: Rapidly rotating groups such as methyl groups induce a fluctuating field at the frequency of rotation.5 The motional properties: In this section we will see how the dependence on the motional properties is expressed mathematically. 1. The following figure displays the correlation function for functions with no (left). oxygen (which is paramagnetic. T1 and T2 relaxation is very fast for these nuclei provided that the ligand environment of the nucleus is non-symmetrical. which gives a narrow resonance in the tetrahedral NH4+ ion but much broader lines in asymmetrical environment such as pyrrole.diradical) is often removed through thaw and freeze cycles to increase T1. For 13C NMR relaxation reagents like Cr(acac)3 are added in very small quantities to bring the T1's down to about 1s (otherwise. The effects are dramatic such that small contaminations with paramagnetic impurities may severely broaden the lines. little (middle) or Sixth Chapter:Relaxation Pg. In order to describe how the angle φ changes with time we use the correlation function g(τ): g(τ ) = f (t ) f (t + τ ) that describes how quickly a function changes with time.LECTURE COURSE: NMR SPECTROSCOPY • rapid T1 relaxation of the coupled nucleus (scalar relaxation of the second kind).

shape etc. Therefore. Sixth Chapter:Relaxation Pg. However. It can be calculated as: J (ω ) = 2τ c 1 + ω 2τ c 2 The dependence of the spectral densities on the frequencies are shown in the figure below for large (left). A very approximate formula valid for globular proteins in water is τc ≈10-12 M (M = molecular weight in Dalton) but depends highly on temperature. smaller molecules may rotate faster than larger molecules so that the highest possible frequency is lower for larger molecules. This can be rationalized in the following way: The overall power from all frequencies (the integral under the spectral density function) must remain the same for all molecules. g(τ) is believed to be exponential: g(τ ) = e −τ / τ c τc is the correlation time which is defined to be the time required for a 360˚ rotation of the molecule.74 . We are not interested so much into the time it takes for a molecule to change its spatial arrangement but rather on the frequency with which these changes take place. typical correlation functions for no decay (left). Since the NMR signal decays exponentially (this can be derived from the lineshape which must be lorentzian for exponential decay). the spectral densities. It is clear that the densities at low frequencies increase with increasing correlation times (larger molecules). are preferred. which are the Fourier transform of the correlation function. slow decay (middle) and fast decay (right. The spectral density J(ω) tells us how much power is available from the motion of the molecule to cause fluctuations at the frequency ω.LECTURE COURSE: NMR SPECTROSCOPY rapid (right) time dependence: FIGURE 6. medium-sized (middle) and small molecules (right).

We will see later that the frequencies that match possible NMR transitions determine how quickly a nucleus may relax. Small molecules therefore posses a broad band of rotational frequencies whereas the larger molecules have more spectral density at the lower frequencies (in fact. Spectral density functions for no decay (left).75 .or ydirections cause spins to flip from the α-to the β-state or vice versa. fields in x.y or z direction: An additional field in z-direction means that the spins additionally precess about the z-axis with the frequency of that field. 1. the highest spectral density is at frequency zero).In contrast. Sixth Chapter:Relaxation Pg. medium decay (middle) and fast decay (right).5. The motional fate of a molecule can be described by the following scenario: A molecule rotates with a certain frequency.1 The dependence of the relaxation rates on the fluctuating fields in x.LECTURE COURSE: NMR SPECTROSCOPY FIGURE 7. After the crash the molecule starts to rotate again until it has reached its highest possible frequency or has hit another molecule: H H N H N N N N H H ν ν ν ν FIGURE 8. Then it hits another molecule and the rotation is slowed down or stopped.

Sixth Chapter:Relaxation Pg. the dephasing effect from it would be reversed and averaged out. The longitudinal relaxation time depends on the frequency of α.LECTURE COURSE: NMR SPECTROSCOPY Bo=z y x FIGURE 9. fields along z change the precession frequency since they alter the strength of the static field (which is also along z): 1 T2.76 . Obviously. The transverse relaxation time is determined by the amount of dephasing of transverse magnetization. x 1 T2. The contribution of lifetime broadening to T2 is the same as to T1 since it uses the same mechanism and hence similar spectral densities are required.to β-transitions) will reduce the lifetime of the state (lifetime broadening). This can be seen from the Heisenberg principle which states that the shorter the lifetime is the larger the uncertainty in energy is. y 2 2 = γ 2 ( Hz J (0) + H y J (ω )) 2 2 = γ 2 ( Hz J (0) + H x J (ω )) This mechanism is represented by the field term along z in the equations above. It can therefore only be effective if that field stays in the +z direction and hence the spectral density at zero frequency is important. Dephasing at J(0) is effective because if the z-field would fluctuate.to β-state transitions and therefore on the fields along x or y: 1 T1 2 2 ∝ γ 2 ( H x + H y ) J (ω ) In order to be effective these fields must precess with frequencies comparable to the larmor frequency about z. say from the +z-direction to the -z-direction. rotations about the x. This is analogous to the case of the B1 field which can only influence spins when the field precesses about the z-axis. In addition.or y-axis (causing α.

Assuming free diffusion in a cone the half-angle θ expressing the spatial restriction of the internal motion can be calculated as S ( θ max ) = 0. τe is the effective correlation time for that internal motion. The spectral densities in this model is expressed as: J ( ω ) = S ( τ R ⁄ ( 1 + ωτ R ) ) + ( 1 – S )τ e ⁄ ( 1 + ωτ e ) 2 2 2 2 The strength of the Lipari-Szabo interpretation is that it gives an impression about the relative “floppiness” of parts of the molecule in absence of any specific model about the exact nature of the internal motion.4 into a half angle of 45°: 2 2 Sixth Chapter:Relaxation Pg.6 Excurs: The Lipari-Szabo model for motions: The Lipari-Szabo model (also sometimes referred to as the “modelfree” approach) factorizes the autocorrelation function into a correlation function for overall tumbling and one for internal motions: g ( t ) = go ( t ) • gi ( t ) The overall correlation is assumed to decay exponentially –t ⁄ τR go ( t ) = e The correlation function describing internal motions is described as g i ( t ) = S + ( 1 – S )e 2 2 –t ⁄ τe The generalized order parameter S2 describes the spatial restriction of the internal motion with respect to a molecule-fixed coordinate system.LECTURE COURSE: NMR SPECTROSCOPY 1.77 .5 cos ( θ max ) ( 1 + cos θ max ) which translates for an S2 of 0. A value of 1 means that a particular vetor does not move relative to the molecular frame and a value of zero indicates that movement of a vector is completely uncorrelated to overall tumbling which is the case for highly flexible loop regions in globular proteins for example.

Furthermore one spin may go from the α. It can be seen from the figure below that for T2 relaxation spectral density at J(0) is important in contrast to T1 and NOE. Hence T2 times are very short for large molecules leading to very broad lines.LECTURE COURSE: NMR SPECTROSCOPY 1.to the βstate and another one from the β. A transition that involves a single spin going from the α. As we have seen before J(0) steadily increases with increasing molecular size and for larger molecules such as proteins almost all spectral density is at J(0).to the α-state in a correlated fashion (zeroquantum transition). zero. Sixth Chapter:Relaxation Pg. For homonuclear spin systems the zero-quantum frequencies are very low (kHz range) and the double quantum frequencies very high.to the β-state is called a single-quantum transition: ββ ββ βα αβ βα αβ αα αα i -Spin single -quantum transitions S-Spin FIGURE 11.7 The nature of the transitions: So far we have only been talking about a single spin changing his state due to interaction with the surrounding spins.78 .and double quantum transitions double -quantum transition For T1 and T2 processes spectral densities at frequencies corresponding to different transitions are utilized. Right: S-spin single quantum transitions Alternatively two spins may simultaneously go from the α. left: I-spin single quantum transitions. ββ ββ βα αβ βα αβ αα αα zero -quantum transition FIGURE 12. The frequency for the double quantum transition corresponds to the sum of the frequencies of the individual spins whereas the zeroquantum frequencies are formed from the difference of their corresponding frequencies.to the β-state (double-quantum transition).

Sixth Chapter:Relaxation Pg. Fore large molecules. relaxation is mainly due to 1H. single quantum nitrogen coherences and heteronuclear (15N.LECTURE COURSE: NMR SPECTROSCOPY Note that the parameters in the figure below are given for 15N relaxation data (the mechanism is dipolar relaxation with 1H). For 1H relaxation. T2 relaxation is very fast.15N dipolar interactions and 15N chemical shift anisotropy.1H) double and zero-quantum coherences: 1 = R N (N Z ) = T1 2 2 γ H γ N h2  J ( ω H − ω N ) + 3 J ( ω N ) +    6 4r N . and this is the principal reason why large molecules display very broad nmr lines. that the rates of T1 and T2 relaxation differ in the contribution of J(0) for T2.H 6 J ( ω H ) + 6 J ( ω H + ω N )  N 2 ∆2 ω N  2 1   J (0 ) + J ( ω N ) 3 3 2  + in which ∆ denotes the chemical shift anisotropy of nitrogen. T2 and NOE upon spectral densities at various frequencies. Note.ωH ωH T1 T2 NOE FIGURE 13. Dependence of T1. For 15N magnetization. It depends on spectral density of single quantum proton coherences.H 6 J ( ω H + ω N )  + 2 ∆2 ω N J (ω N ) 3 1 = R N (N x .79 ω N + ωH ωN o . Hence. the zero quantum frequencies (which are the difference of the chemical shifts) are in the 0-10 KHz range and therefore very close J(0) whereas for 15N nuclei the zeroquantum frequencies are not so much away from the proton frequencies (MHz range).y ) = T2 2 2 γ H γ N h2 4 J (0 ) + J ( ω H − ω N ) + 3 J ( ω N ) +    8r 6 . J(0) contains almost all spectral density. ω N .

8 Measurement of relaxation times: T1 relaxation times are usually determined from the inversion recovery sequence: 180 deg pulse…delay…90 deg pulse…delay ..LECTURE COURSE: NMR SPECTROSCOPY The dependence of transverse and longitudinal relaxation upon the correlation time is shown in the next figure. T1 however passes a minimum.80 . Dependence of T1 and T2 upon the overall tumbling time 1. (T1 relaxation does not depend upon spectral density at J(0): T1 T2 FIGURE 14. T2 continuously gets shorter with increasing molecular size due to the increase in spectral density at J(0). Following the point where spectral density at the zero-quantum frequencies decreases T1 is getting larger again.acquisition Sixth Chapter:Relaxation Pg.

A delay follows during which T1 relaxation takes place bringing the -z magnetization back towards +z.81 . The magnitude and sign of the x-magnetization at the end of the sequence depends on a) the T1 constant and b) the relaxation delay ∆. Inversion recovery. magnetization is inverted by application of a 180 degree pulse. Transverse relaxation time is determined from a Carr-Purcell Spin echo. In principle.LECTURE COURSE: NMR SPECTROSCOPY z y x 180 deg z y ∆t x z 90 deg z z y x 90 deg z 2∆t FIGURE 15. one is not interested into the contribution from field inhomogeneity (this would mean that the transverse relaxation time would depend on the quality of shimming) and therefore the CarrPurcell sequence that eliminates the additional T2 relaxation due to field inhomogeneity is applied: Sixth Chapter:Relaxation Pg. Afterwards a 90 degree pulse along y turns the magnetization onto the x-axis into observable signal. In this sequence. one could simply measure the decay of transverse magnetization following a 90 degree pulse. Usually. inhomogeneity of the static field leads to accelerated transverse relaxation. However.

Carr-Purcell spin echo. the inversion recovery and the Carr-Purcell sequence a set of 1D (or 2D) spectra is recorded with different relaxation periods.82 . The effect of the 180˚ pulses is to refocus differential precession due to field inhomogeneity. For both experiments.LECTURE COURSE: NMR SPECTROSCOPY z y x 90 deg z ∆t z y x z z y x 180 deg z y x ∆t FIGURE 16. Mostly these plots yield decaying exponentials and by fitting procedures (least squares fit to the experimental data) it is possible to extract the time constant for the decay: Sixth Chapter:Relaxation Pg. The sequence is also referred to as an spin-echo. In this sequence 180 degree pulses are applied during the T2 relaxation delay equally spaced by delay periods. The intensities of the remaining signal is measured and plotted against the relaxation delay.

Sixth Chapter:Relaxation Pg.4 0.6 2. Analytical formula to describe the decay of longitudinal (left) and transversal (right) magnetization.LECTURE COURSE: NMR SPECTROSCOPY T1 Intensity Intensity T2 [sec] 0.83 .2 1.0 [msec] 80 160 240 I(t) = A e -R1/t + B I(t) = A e -R2/t + B FIGURE 17.8 1.

the NOE is the major tool for elucidation of stereo-chemistry of molecules in solution. This phenomenon is called nuclear Overhauser effect or NOE. The NOE effect is the method for elucidation of 3D structural features and stereochemistry using NMR together with information from scalar spin.84 . The efficiency through which the NOE is transferred from spin I to spin S depends strongly on the distance of the two protons involved and on the tumbling properties of the molecule: η = f (τ c r −6 ) Because of the distance dependence. it characterizes the rate of Seventh Chapter: The NOE Effect Pg. THE NUCLEAR OVERHAUSER EFFECT (NOE): If one resonance A is irradiated.spin couplings. Physically speaking. The NOE depends on the relaxation rates of zero. The NOE enhancement factor η is defined as η = fI {S} = (I − I ) o Io in which I and Io is the observed intensity of the resonance of spin I with and without irradiation of spin S. an increase (positive NOE) or decrease (negative NOE) of signal intensity of other resonances such as resonance C is observed when spin C is close in space to spin A: A B C Reference positive NOE A C B negative NOE FIGURE 1. Irradiation of resonance A leads to a increase of peak intensity of the neighboring spin C (positive NOE) or to a decrease of peak intensity (negative NOE).LECTURE COURSE: NMR SPECTROSCOPY 1.and double quantum transitions: fI {S} = γ S σ IS γ I ρ IS σIS is the cross-relaxation rate. respectively.

In a two-spin system is ρIS equals to 1/T1. It is the rate constant for direct dipolar relaxation of spin I by spin S. It corresponds to the rate of recovery of I-signal after selective inversion. In multispin systems. The smaller the angle α the closer the third spin C is and the more efficient dipolar relaxation of spin A by spin C becomes thereby dramatically reducing the magnitude of the NOE between spins A and B. It can be expressed as: σ IS = W2 QC − WZQC Therein. however. dipolar relaxation with other spins contributes to 1/T1 and then ρIS is not equal to 1/T1.LECTURE COURSE: NMR SPECTROSCOPY dipole-dipole transitions that give rise to the NOE. The important point to note here is that the magnitude of a NOE between two particular spins not only depends on their distance (and on the tumbling of the molecule) but also on the fact how many other protons are in close distance: fA{B} α FIGURE 2. Note that the distance rAB remained unchanged! Seventh Chapter: The NOE Effect Pg. Dependence of the strength of the NOE on spin A caused by irradiation of spin B on the bond angle α. W2QC and WZQC are the rates for double-quantum and zero-quantum transitions. In the case of multispin systems R1 = 1 = ρ IS + ∑ ρ IX + ρ I* T1 x ρIX corresponds to dipolar interaction with all other spins X and ρ* to other relaxation mechanisms for spin I such as CSA. ρIS is the longitudinal-relaxation rate.85 . This is nicely demonstrated in the figure above which shows the magnitude of the NOE between two protons A and B.

The famous NOESY (or ROESY) is the 2D variant.states of a spin system are different from the equilibrium value. • Seventh Chapter: The NOE Effect Pg. This can be accomplished by • an inversion pulse (180 degree pulse) that inverts the relative populations of α. In this experiment a resonance is selectively inverted with a selective 180˚ pulse.5s).and β.86 .states saturation of a resonance line that causes the corresponding α.LECTURE COURSE: NMR SPECTROSCOPY 1. Right: Population after saturation of the I-spin resonance. A reference spectrum is recorded without irradiation and subtracted. in which a resonance is selectively irradiated with low power for a time τm sufficiently long to completely saturate the transition and propagate the NOE (approx. one experiment with and one without the selective 180˚ pulse are subtracted from each other. Again. the transient NOE. The difference spectrum shows only signals which have received a NOE (that means. After a delay τm for NOE buildup a 90˚ read pulse is applied and a 1D acquired. Utilizing these two different means of disturbing the populations of spin systems the experiments for measuring NOEs can be categorized into the following • the steady-state NOE experiment.and βstates to be equally populated. a NOE enhancement can be triggered whenever the population of α. > 0. • ββ S βα I αβ S I S I I αα S I S I S FIGURE 3. which have changed their intensity) and the irradiated resonance. Left: Equilibrium population.and β. Middle: Population after selective I-spin inversion pulse.1 Experiments to measure NOEs: In principle.

The enhancement is: − rIS6 − + ∑ rIX6 x fI {S} = ηmax − rIS6   −6  f X {S}rIX  − ηmax ∑ −6  r + ∑ r −6  x IX  IS  x   In this equation the first term represents the direct contribution to the NOE.LECTURE COURSE: NMR SPECTROSCOPY τm NOE τm Ref steady-state tr ansient noe FIGURE 4.2. The influence of the indirect effect is smaller but noticeable. Depending on the correlation time and the sign of the NOE one distinguishes two cases: 1. not only on those saturated and observed. The second term in the equation above describes the indirect NOE transfer.87 • • • Seventh Chapter: The NOE Effect . Pulse-schemes for measuring of steady state NOE (left) and transient NOE(right). In spindiffusion a relay spin that is close to both spins serves to transfer the NOE.2 The steady-state NOE: The steady state NOE depends on the geometry of all protons nearby. The magnitude due to the direct NOE is influenced by nearby protons because they have an influence on T1. depending on the geometry. Pg. The lines are rather sharp (hence the name extreme-narrowing). This is shown in the figure below that displays the contribution due to the 3spin effect depending on the angle α (extreme narrowing).1 Extreme narrowing (ηmax >0): • Most enhancements are positive but some can also be negative. T1 and T2 values are very similar. The indirect transfer is a 3-spin effect. It is also called spin-diffusion. 1.

LECTURE COURSE: NMR SPECTROSCOPY f C{A} total direct α indirect FIGURE 5. 1.B.2. Seventh Chapter: The NOE Effect Pg.88 . f A{B} NOE A 1 B 2 C 1 D fC{B} f D{B} ωτC FIGURE 6. Contributions of direct and indirect (spin diffusion) effects to the overall NOE.C and D are 1:2:1 as indicated in the insert. Steady-state enhancements depending on the correlation time for a four-spin system.2 Spin-diffusion (ηmax <0): • • • In the negative NOE regime (large molecules). Resonance B is irradiated. The lines are broad. The T2 values are very much shorter than T1. The relative distances between spins A. all enhancements are negative.

This is shown in the figure above. • The following figure shows the transient NOE buildup upon irradiation of Seventh Chapter: The NOE Effect Pg.LECTURE COURSE: NMR SPECTROSCOPY Spin-diffusion is very effective and steady-state NOE measurements are completely useless. enhancements are non-symmetrical due to possible relaxation leakage with a third spin: fI {S} ≠ fS {I} 1. in which the irradiation time is limited to short periods. Spin-diffusion can be recognized from the buildup curves of the NOEs (a number of NOESY experiments are recorded with increased mixing times. The NOE enhancement is: fI {S} = σ − ( R' + D )τ m − e − ( R' − D )τ m ) (e D R' = 1 ( RI + RS ) 2 D = 1 2 ( RI − RS )2 + σ IS 4 The transient NOE has some features that are remarkably different from the steady-state NOE: • Enhancements are symmetrical fI {S} = fS {I} irrespective whether spin S has another proton close in space (which quenches the NOE in the steady state case dramatically). When the molecules have gained a certain size the spin-diffusion effect spreads the NOE out to all other protons (see the magnitude of the NOE for ωτc > 100) respectable of what their distance to the irradiated proton is! In order to circumvent the problems associated with spin-diffusion the truncated-driven NOE has been used. 1D transient and NOESY experiments give identical enhancements. Spin-diffusion cross peaks should show a characteristic induction phase). In both regimes. • Using short mixing times NOE information is still useful in the spin-diffusion case.3 The transient NOE: In the transient NOE experiment a resonance is inverted by application of a selective 180 degree pulse or unselectively in a 2D experiment (NOESY).89 . the extreme narrowing and the spin-diffusion limit.

A one-spin system may be in the α or β state or may undergo a transition from the α into the β state (or vice versa). This is in contrast to the use of steady-state NOE's in that case. The Seventh Chapter: The NOE Effect Pg. 1. the αβ. These are states that do not undergo transitions. Lys56 β1-H and β2-H depending on the used mixing time for molecules in the extreme narrowing (τc = 3x10-11 or 3x10-10) or in the spin-diffusion limit (τc = 3x10-9 or 3x10-8): τC=3 x 10 -11 NOE τC=3 x 10-10 τC =3 x 10-9 τC=3 x 10-8 FIGURE 7. the βα or the ββ state or may undergo transitions between them. A two-spin system may be in the αα. In thermal equilibrium all off-diagonal elements are zero. Off-diagonal elements are transitions. The density matrix contains diagonal elements which correspond to populations. In the extreme narrowing the spin-diffusion peak β2-H is of negligible intensity.LECTURE COURSE: NMR SPECTROSCOPY Lys-56 NH of bovine phospholipase A2 and observation of Ala-55 NH (N).90 . In the spin-diffusion limit it can still be distinguished from the genuine NOE peaks at short mixing times. Strength of the spin-diffusion peak (β2) in dependence of the correlation time. The density matrix contains the probabilities for a given state or transition and hence is a convenient way to simultaneously represent all possible states of a spin system.4 The state of the spin system and the density matrix: The density matrix describes the state of the spin-system.

Those are the only transitions which lead to observable signals during detection periods. since only one spin changes its state. Double quantum transitions involve transitions where two spins flip the same way and in zero-quantum transitions the two spins undergo opposite flips.91 . The double quantum coherences: αα  → ββ or ββ  → αα   and the zero-quantum coherences (flip-flop transitions): αβ  → βα  or βα  → αβ  are not directly observable but play a very important role for the theoretical description of the nuclear Overhauser effect (NOE) because their efficiency determines the cross-relaxation rate. zero quantum coherences evolve with the difference of their chemical shifts: αα αα αβ βα ββ αβ βα ββ Populations αα αα αβ βα ββ αβ βα ββ Single-Quantum Transitions ββ ββ βα αβ βα αβ αα I-Spin S-Spin αα FIGURE 8. Occupied states of the density matrix (left) of populations and single-quantum transitions with corresponding transitions.LECTURE COURSE: NMR SPECTROSCOPY αα  → αβ or αα  → βα   αβ  → αα  or βα  → αα  or transitions are called single-quantum coherences. Seventh Chapter: The NOE Effect Pg. Double quantum coherences evolve with the sum of the chemical shifts of the comprising spins.

Occupied states of the density matrix (left) of zero.LECTURE COURSE: NMR SPECTROSCOPY αα αα αβ βα ββ αβ βα ββ Zero-Quantum Transitions ββ βα αβ αα αα αα αβ βα ββ αβ βα ββ Double-Quantum Transitions ββ βα αβ αα FIGURE 9.5 The sign of the NOE: The sign of the NOE can be positive (small molecules.92 . hence the change in the sign of the NOE: Seventh Chapter: The NOE Effect Pg. large molecules relax via zero-quantum transitions whereas small molecules mostly use double-quantum transitions. The dependence on the size of the molecule (to be more specific: on their correlation time) comes into play because the cross-relaxation rate is defined as: σ IS = W2 QC − WZQC For proton. 1. spin-diffusion limit). As we have seen before large molecules have spectral density only at frequencies close to zero. Therefore.proton NOEs the zero-quantum frequencies are close to zero and the double-quantum frequencies are very high. extreme narrowing) or negative (large molecules.and double-quantum transitions with corresponding transitions.

LECTURE COURSE: NMR SPECTROSCOPY J(ω) J(ω ) og ω og ω FIGURE 10. Middle: Max. the so-called spin-lock field. and hence relaxation always takes place via the Seventh Chapter: The NOE Effect Pg. This is the reason. At this size efficiency of zero-quantum and double-quantum transitions is approximately the same and therefore the cross-relaxation rate (which is the difference between the two rates) is close to zero: FIGURE 11. Because the B1 field is much weaker (kHz range instead of MHz range).93 . NOE in dependence of the correlation time. Spectral densities for a small (left) or large (right) molecule. NOE and ROE dependence on the correlation time.wt. is applied along a transverse axis (x.(or y-) axis with a much lower frequency as the magnetization precesses about the z-axis in the NOE experiment. The absolute size of zero. In the rotating frame NOE (ROE) experiment an additional field.and double-quantum transitions depends on the strength of the applied field. at RT). In the ROE experiment magnetization therefore precesses about the x.or double-quantum transitions have much lower frequencies. why NOE spectra give very disappointing results for medium sized molecules (approx.or y-axis). 2000 m. the zero.

even for large molecules. However the spins relax with T1ρ during the spin-lock time (which is similar to T2) and hence the ROESY cannot be used for larger molecules due to rapid relaxation during the mixing time.5 times faster than the NOE buildup and hence shorter mixing times can be used.LECTURE COURSE: NMR SPECTROSCOPY double-quantum transitions and no zero crossing is observed: Bo =z Bo=z y x B1 =y NOE FIGURE 12. β1β2 α1β2 β1α2 α1α2 spin-1 tr an sitions α1β2 Let us assume that we irradiate the resonance of spin 2: Seventh Chapter: The NOE Effect Pg. In contrast. 1. Axis of rotation during NOE (left) and ROE(right) buildup.94 .6 Why only zero. y x ROE The ROE buildup is about 2. relaxation during the mixing time of a NOESY takes place with T1 which is long.and double-quantum transitions contribute to the NOE In a two-spin system the transitions α2->β2 give rise to the spin-2 resonance and the transitions α1->β1 to the spin-1 resonance: β1β2 β1α2 α1α2 spin -2 tr ansiti ons FIGURE 13.

because irradiation of the spin 2 resonances still keeps the populations of the two α2 and β2 states equal leading to β1α2 = β1β2 and α1α2 = α1β2.LECTURE COURSE: NMR SPECTROSCOPY β 1β 2 2/ 4 2/ 4 β1β2 3/3 3/ 6 β 1α 2 4/ 8 4/8 α 1β2 α 1α 2 β1α2 3/ 6 6/ 6 α 1β 2 α1α 2 FIGURE 14. As can be seen from the following figure. only zero. Due to the irradiation the populations of the two states α2 and β2 are equalized.or double quantum transitions:: αα  → αβ or αα  → βα   αβ  → αα  or βα  → αα  or ( SQC ) ( DQC ) ( ZQC ) α1α 2  → β1β 2  α1β 2  → β1α 2  or β1β 2  → α 1α 2  or β1α 2  → α 1β 2  Wo W1 W2 W1 zero-quantu m tr an siti ons single-quantu m tr ansi tions double-quantu m tr an siti ons FIGURE 15. this system tries to go back to the equilibrium state. However.and double-quantum transitions lead to a change of the intensity of the spin-1 transition (and hence to a NOE effect): Seventh Chapter: The NOE Effect Pg. Now. single. It can do so via zero-.95 .

1. oxygen is a biradical). that means if the tumbling time is such that the NOE is near to the zero-crossing. the mixing time has to be optimized for the molecule size. The sample should be concentrated enough but not too concentrated (little lock signal).5 3.5 6.5 3. Use sufficiently long relaxation delays (3-5 times T1). For the same reason. adjust lock power just below saturation to give a strong lock signal.5/ 6.5/ 6.5/ 5.96 .5/ 2. rather not CDCl3 or D2O if possible).5/ 6. Use a solvent. the temperature must be stable. because than the lock is more stable.5/ 5. single-quantum (middle) and double-quantum (right) transitions and subsequent restoring due to spin-2 irradiation. • • • • • • • • Seventh Chapter: The NOE Effect Pg. Especially.7 Practical tips for NOE measurements: • • the conditions for measurement must be very stable (as always true for methods that rely on differences). For observation of NOE's between methyl groups and other protons.5 3/ 6 6/ 6 2. that gives an intense lock signal (DMSO.5 2.5 3/ 3 3/ 6 2. Optimize the lock power. do not use too long mixing times in order to avoid spin diffusion. going from a non-viscous solvent (acetone) to a viscous solvent (DMSO) or measuring at lower temperatures may increase the size of the NOE dramatically (note that at low temperatures the danger is high that the temperature is not stable).5/ 5. If the NOE is very small.5 FIGURE 16. irradiate the methyl group. remove oxygen (degas the sample. so that the lines easily shift when the temperature is not stable. Avoid paramagnetic impurities! If very small effects should be measured. acetone. because relaxation of methyl protons is mainly governed by the other methyl protons.LECTURE COURSE: NMR SPECTROSCOPY 3.5 5. D2O also has a large temperature shift of the solvent line. Populations after zero-quantum (left).5/ 3. never use spinning for NOE measurements! Measuring over night or on weekends is preferred because of less traffic in the building. Pay attention to the choice of the solvent.

However.g. …. After the calculation the 20-50 separately energy-minimized conformers is superimposed for best fit. a process known as “calibration”: –6 V = k⁄d 4–6 These distances will then serve as upper limits to constrain distances between different protons in the calculated structures. Flexible parts of the molecule usually will display less NOE’s are less well defined in the resulting structure bundle. 20-50) randomly chosen conformers is energy minimized under a simulated annealing protocol. that the strength of the NOE between protons depends on their distance. The force itself is expressed as the negative gradient of the potential energy. The NMR constrains in the potential energy function will force the molecule to adopt a structure that is compatible with the NMR data. The inherently different flexibility of different classes of protons in peptides (e. Additionally. Seventh Chapter: The NOE Effect Pg. the coordinate of a atom at time t can be calculated from the force acting on it. nowadays restrained molecular dynamics calculations are performed.LECTURE COURSE: NMR SPECTROSCOPY Excurs I: The use of NOE data for structure calculation of peptides and proteins NMR data can be used for structure calculations of proteins up to about 30 kDa presently. the distance of sequential amide protons in helices is about 3Å). whereas for NOE’s involving methyl protons a r-4 calibration will be applied. To calculate structures from these upper limits and torsion angle constraints distance geometry algorithms have been used in the past. The NOE depends also on the correlation time. In these calculations. The method uses the fact. The constant k can be determined on the basis of known distances (e. Newtons equation of motion is integrated: mi d r ( t ) = Fi ( t ) dt2 i 2 i = 1. This is mostly the case when enough NOE’s are present to define the structure. Backbone atoms are calibrated with a r-6 dependence. scalar vicinal coupling constants may be used to constrain torsional angles. The volume of the NOESY crosspeaks may be expressed as V = 〈 r 〉 f ( τc ) The distance between the two protons may vary due to flexibility of the polypeptide chain.97 . The first step in the procedure is to assign the NOESY spectrum completely.g. compare backbone atoms with methyl-groups) is taken into account by applying different calibration functions for them. The potential energy function is the normal force field expanded by an additional term reflecting the nmr constraints: U pot = U forcefield + U NMR During a structure calculation a number of (typ. Due to the flexible nature of polypeptides no lower limits are used (except for disulfide bridges). N Thereby. The next step is to convert NOESY peak volumes into distances. Peaks are then integrated. A resulting narrow structure bundle indicates good convergence of the calculation.

could show. Usually. the relative orientation of two helices) is difficult to describe from NMR experiments. Relatively newly. Any misassignment will lead to a large errors in the relative orientation. residual dipolar couplings have been used for describe orientations of parts of the molecule that are separated by a large distance. these dipolar interactions are averaged to zero in solution due to rapid tumbling and therefore rapid changes in the angle f. These pospholipid vesicles orient in the magnetic field such that the membrane normal is perpendicular to the direction of the magnetic field. Thereby. that it is possible to partially orient macromolecules in solutions containing bicelles (disk-shaped vesicles). Marcomolecules in these solution are then partially oriented by simple steric reasons: B0 φ χ The dipolar coupling can be calculated as: A δ dip ∝ S ( B 0 )γ A γ B r AB • [ χ A ( 3 cos 2 ( φ – 1 ) ) + χ B ( sin 2 φ cos 2φ ) ] where cA and cB are the axial and rhombic alignment tensors and S the order parameter. only a few NOE’s between the two elements may be used. However. Thereby. a reference frame for all protons (the alignment frame) is available and orientations are possible with respect to that frame irrespective of the number of intervening bonds.LECTURE COURSE: NMR SPECTROSCOPY Excurs II: Use of dipolar couplings to yield structural constraints: Orientations of structural elements with respect to each other (e. 2 –3 Seventh Chapter: The NOE Effect Pg. Bax et al.98 . parts of molecules that are far apart may be oriented relative to each other.g. Dipolar interactions between two protons depend on the orientation of the vecto connecting the two atoms with respect to the external field Bo 1H r Bloc = φ 15N µ (3 cos2 φ − 1) r3 Usually.

sharp line positioned somewhere between the two lines) Intermediate exchange (a single. very broad (or invisible) line. Binding of methanol to protein in the vicinity of a aromatic residue leads to strong shift of methyl signal In such a situation the methyl group of ethanol has different chemical environments in the bound and in the free state. CHEMICAL OR CONFORMATIONAL EXCHANGE: Let us assume that ethanol binds to a target molecule and dissociates of again: -OH CH 2 CH 3 + CH3-CH2-OH Me=1 ppm Me=-0. Alternatively it could be conformational exchange. All these processes are frequently encountered in NMR.1 Two-site exchange: Let as assume the following reaction: +1 A  → B −1 B  → A k k The lifetime of state A is: τA and of state B is = 1 / k+1 = 1 / k−1 τB Fifth Chapter: Chemical and conformational exchange Pg. 1. and therefore the chemical shift will be low-field shifted. In the bound state it is under the influence of the ring current shift of a tyrosine residue for example. In the free state the anisotropy effect due to the ring current shift has disappeared. Three different states can be distinguished: • • Slow exchange (two sets of resonances with reasonable sharp lines) Fast exchange (a single.) • The underlying exchange process may also be chemical exchange.5 ppm FIGURE 1. Depending on the exchange kinetics the methyl signal will appear as a single or as two resonances with more or less exchange broadening.99 . such as exchange between the hydroxyl protons and protons from dissolved water.LECTURE COURSE: NMR SPECTROSCOPY 1.

k << δA . 2nd row from top: coalescence. Fifth Chapter: Chemical and conformational exchange Pg.LECTURE COURSE: NMR SPECTROSCOPY The NMR parameters that characterize both states are a) the chemical shift.JB k << 1/T2A-1/T2B k = δA . b) scalar spin. • The effect of chemical or conformational exchange on the chemical shift is shown below. The ratio is influenced by • increasing temperature accelerates the exchange reaction and therefore pushes the system into the fast exchange regime increasing static fields increases the line separation and therefore drives the system into the slow exchange regime. The NMR timescale is defined by the relation of the exchange rate with respect to the magnitude of the accompanying change in the corresponding NMR parameter: Exchange rates Time scale slow intermediate fast Chemical Shift Scalar Coupling Transverse Relax. a signal in the fast exchange regime is into the slow exchange regime pushed by decreasing the temperature or increasing the field strength. Appearance of two-site exchange spectra in dependence on the exchange rate. At the coalescence temperature a very broad line with a plateau is observed.δB k << JA. fast exchange coalescence Bo slow exchange FIGURE 2.δB k >> JA.JB k >> 1/T2A-1/T2B The exchange time scale is defined by the separation of the two signals relative to the exchange rate.spin couplings and c) the linewidth (transverse relaxation time).δB k= JA.100 Temp .JB k = 1/T2A-1/T2B k >> δA . Bottom: Slow exchange. Top: Fast exchange. Therein.

the faster the reaction or the smaller the frequency difference (provided that a single line is observed.1 Fast exchange: At fast exchange a single resonance line is observed at the frequency δ ave = pAδ A + (1 − pA )δ B It is obvious from the equation above that the resonance position of the averaged signal may not be simply the arithmetic mean of the resonance positions of the two slowexchanging lines because the population of the two states has to be taken into account (usually a unknown). The exchange reaction causes an additional contribution to the linewidth of ∆ν 1 / 2 = 1 π (ν A − ν B ) 2 k+1 2 Thereby. A similar situation exist with averaging of couplings: J ave = p A J A + (1 − p A ) J B An important example for averaging of couplings is found for hydroxyl protons of alcohols that exchange with solvent water protons.101 .1. This mechanism has been termed self-decoupling and is the reason why OH protons in alcohols usually appear as (broad) singlets: H CD3----C D O H + H O H H CD3----C D FIGURE 3.LECTURE COURSE: NMR SPECTROSCOPY 1. only the avaraged line at the center without splitting due to coupling is visible. If this process is fast. O H + H O H Fifth Chapter: Chemical and conformational exchange Pg. Such an increase in reaction rate can be accomplished via a temperature increase and a decrease in frequency separation by lowering the magnitude of the static field. In the figure below. When the exchange is slow both lines of the doublet are visible but for the fast case only the average singlet will be observed. Through chemical exchange that proton is substituted by a proton that comes from water and is in the β-state. the boxed proton feels the vicinal proton to be in the α-state (left side). fast exchange regime) the narrower the line. Exchange of the hydroxyl proton with a proton from water may lead to a change in the spin state of the OH proton.

A detailed investigation shows that it may be described as: g(ν ) = 2τ A (ν A − ν X ) 2 2 ν − 1 ν + ν  + π 2τ 2 ν − ν ( A X ) A A  2   ( ) (ν 2 −νX ) 2 The following figure shows calculated lineshapes for two signals 10 Hz apart (top trace) depending on the lifetime (which is the inverse of the reaction rate) or for two signals with 0.1.5 1.1.LECTURE COURSE: NMR SPECTROSCOPY 1. You Fifth Chapter: Chemical and conformational exchange Pg. one is not interested in recording spectra with exchange-broadened lines.2 τa 0.1sec lifetime depending on the frequency separation (given in Hz): 0.01 0. when the lifetime is long (1s). Top: Two lines. In contrast.0 ∆δ 1 3 4 5 6 10 15 τ a=0. At coalescence the lineshape is characterized by a flat top.102 . Bottom: Calculated for a lifetime of 0.1 sec FIGURE 4. At slightly acidic pH the amide protons give separate.05 0.3 The intermediate case: The lineshape of the signals changes upon passing from the slow into the fast exchange regime. temperature decrease or field increase will lead to a sharpening of the lines. if the lifetime of the separate states is short (0. A typical example where both situations (slow and fast exchange) are simultaneously encountered is exchange of amide and hydroxyl protons of peptides with solvent in aqueous solution.3 0.1 ∆δ =10 Hz 0. 10 Hz separated appear as a singlet.01s) or as two separate lines. exchange between hydroxyl and water protons is so fast that the hydroxyl protons coincide with the water chemical shift and cannot be observed separately. The corresponding lifetime at coalescence is given by τc A = 2 (ν − ν X ) π A Usually.2 The slow exchange limit: When two separate signals are observed the additional contribution to the linewidth due to exchange is: ∆ν = k+1 π Hence. sharp lines and the exchange rate is on the order of 1-10 sec-1.085 0. 1.1 s with varying frequency separations (1-15 Hz).

The following figure shows 1D spectra (expansions) of chinin recorded at 300 and 600 MHz.295K 600MHz. Crosspeaks are due to exchanging (chemical Fifth Chapter: Chemical and conformational exchange Pg. the mixing time is usually chosen shorter.0 ppm FIGURE 5.103 . • If you cannot get spectra with reasonable sharp lines following this procedure it is worth trying to change the solvent which may have a dramatic effect.LECTURE COURSE: NMR SPECTROSCOPY can find out the proper measuring conditions by • recording spectra at higher temperature ==>when the lines get sharper heat until the lines are sufficiently narrow. record spectra at lower field.2.5 2. Appearance of spectra displaying exchange phenomena in dependence on the static field 1. However. Often cyclic compounds display such dynamic behavior due to slow conformational interconversions.310K 300MHz.1 EXSY spectroscopy: The 2D EXSY experiment is in principle identical to the NOESY pulse experiment.0 2. It is obvious that by going from 600 to 300 MHz a considerable improvement in linewidths has been achieved. When that temperature cannot be reached (sample not heat-stable or solvent is volatile).320K 600MHz.5 3. since the exchange rate is normally much faster than the cross-relaxation rate.300K 3. when the lines get broader upon temperature rise cool down or proceed at higher field.2 Investigation of exchange processes: 1. 300MHz.

it recovers with T1.104 .5 7 6 5 4 3 2 ppm 7. The signal is shown after successive time increments for resonance A (left) or resonance B (right).2 Saturation transfer: When a signal is inverted (e.T1=1s FIGURE 7.5 7. Top: No exchange. The top trace shows the case without exchange between A and B (no effect on A). kex =0. bottom: exchange. In this figure resonance B has been inverted. The middle trace displays a dramatic effect on resonance A when exchange occurs. the longitudinal relaxFifth Chapter: Chemical and conformational exchange Pg. by application of a selective 180 deg. ppm 2 4 6 ppm 7.LECTURE COURSE: NMR SPECTROSCOPY or conformational) protons. 2D EXSY:left: Spectrum overview. However. Single-line spectra of resonance A (left) and B (right)after various time increments. However. Middle:Exchange.g. pulse). infinitely long T1.0 7.T1=inf.0 ppm FIGURE 6.2. right:Expansion 1. other protons that are in exchange with the inverted or saturated resonance become also saturated or inverted: A B kex=0 A B kex=0. T1=1s.

105 .∆ H#/R) and intercept (23. = κ kT − ∆H # / RT ∆S # / R e e h κ is the transmission coefficient (usually 1) k the Boltzmann constant T the temperature h the Planck constant A plot of ln(k/T) versus 1/T yields a line with slope (. Hydroxyl protons that exchange with the solvent (e.96 + ln  [ Jmol ] νA −νB   Fifth Chapter: Chemical and conformational exchange Pg. In close agreement the activation energy can be estimated as ∆G # ≈  Tc  −1 RTc  22. From the rate of recovery the exchange rate can be calculated (provided T1 has been determined before). In the lower trace the signal A recovers due to T1 relaxation.3 Determination of activation parameters: The observation of dynamic processes in NMR spectra allows to calculate parameters for the activation parameters of the exchange process. 1. A frequent case where saturation transfer occurs is through presaturation of solvent.76 + ∆ S#/R). water) vanish from the spectrum or largely decrease in intensity when solvent presaturation is applied.LECTURE COURSE: NMR SPECTROSCOPY ation time T1 has been assumed to be infinity. This is related to the reaction rate k via k = κ kT − ∆G # / RT e h Theory of thermodynamics states that ∆G # so that = ∆H # − T∆S # k therein.g. The activation energy for such a process can be calculated according to the Arhenius equation Ea = − RT ln K # in which K# is the equilibrium constant for the formation of the activated complex.

If not necessary. THE PRODUCT OPERATOR FORMALISM (POF) FOR DESCRIPTION OF PULSE-EXPERIMENTS: Simple one-dimensional NMR experiments may be conveniently described using the pictorial vector description. In the POF calculations are done on magnetization. relaxation effects are usually ignored but can be added easily. precession and scalar coupling can be calculated in arbitrary order. However. which is the ensemble property formed by adding up all dipole moments from separate spin. Eighth Chapter: The product operator formalism Pg. The transformations due to shift precession or coupling are described as rotations in three-dimensional cartesian space: x x ∆t=1/4ν y y FIGURE 1. Rotation of a vector after a time 1/4ν We have seen before that a continous rotation can be described as an harmonic oscillation and presents a superpostion of a sine.and cosine modulated function. the POF may only be used to describe spin systems in the weak coupling case (no second order effects). rather than on individual spins. Truly speaking. in order to more deeply understand two-dimensional NMR or multiple-quantum spectroscopy the product operator formalism is required.LECTURE COURSE: NMR SPECTROSCOPY 1. The following events may happen during or after application of radiofrequency (RF) pulses: • • • • chemical shift precession evolution of scalar or dipolar couplings change of the state of the spins due to additional RF fields relaxation In the following we will see how these events are described in the product operator formalism (POF). In the POF.106 .

g. γB1 2π = 1 PW (360°) The sign convention for rotations is that applying a field along the x-axis will rotate in clockwise sense (Field along y: Look down the y-axis and rotate clockwise. Rotation of z-magnetization about the -x-axis. In the POF this will read as follows: Ax A ω→ z Ax cos(ωt ) + Ay sin(ωt ) The symbol over the arrow indicates the axis and the frequency of rotation. The field strength is expressed in terms of the frequency. which is the inverse of the time required for a 360˚ rotation. This will achieve the following conversions: z -> y -> -z -> -y -> z It is described as: Iz βI x → Iz cos β − I y sin β Of particular importance are rotations of 90 and 180 degrees. The frequency of rotation depends on the strength of the field.y plane Eighth Chapter: The product operator formalism Pg.107 . The resulting magnetization vector rotates in the x.2 Chemical shift precession: After application of a 90˚ RF pulse spins are correlated in phase leading to a bunching of phases.LECTURE COURSE: NMR SPECTROSCOPY In the example given above a property aligned along the x-axis rotates about the z-axis onto the y-axis with a frequency ω. from z to -x) 1. 1.y plane: Bo=z Bo= z Bo= z x y x y x y FIGURE 2.1 RF pulses: Application of a RF field along the x-axis will rotate z-magnetization in the z. e.

Ix ω I z → I x cos(ωt ) +  I y sin(ωt ) The precession frequency is ω=2πδ where δ is the offset from the transmitter frequency. DEPT) or the mixing Eighth Chapter: The product operator formalism Pg. After a certain amount of time it will have rotated by a specific angle depending on its offset frequency. Note that chemical shift evolution can only take place for transverse magnetization! Bo =z B o= z x y x y x y FIGURE 3. Left: Equilibrium state. 1.spin coupling: Due to the fermi-contact interaction spins that have a neigbouring spin in the α-state are of slightly different energy than those that have them in the β-state. Middle: State after 90 deg RF pulse. Shift precession amounts to a rotation of the magnetization vector in the transverse plane. When both vectors are 180˚ out of phase the resulting term is I y Sα + ( − I y )S β = 2 I y ( Sα − S β ) = 2 I y Sz This state is of particular importance for coherence transfer which is the crucial step for polarization transfer experiments (e.3 Scalar spin.LECTURE COURSE: NMR SPECTROSCOPY (transverse plane) with a certain angular velocity. In a reference coordinate system that rotates with the center frequency of a dublet the downfield component will rotate with a frequency of +J/2 in one direction and the other component with –J/2 in the other direction.g. Having different energies means that these two different kinds of spins precess with different frequencies because frequency and energy are related to each other. Right: Shift precession in the transverse plane.108 . INEPT.

S JI.X JI.109 . In the product operator formalism the transformation under scalar spin.S JI. to S) 2IzSzlongitudinal two-spin order 2IxSytwo-spin coherence (mixture of zero-and double-quantum coherence.Xt) leads to the following signal: JI. Scalar couplings do occur as in-phase splitting when the operator is Ixcos(πJI.St)cos(πJI.St) The operator 2IySzsin(πJI. Iytransverse x (or y) magnetization Izlongitudinal magnetization 2IxSzantiphase I magnetization (or I magnetization antiphase w.spin coupling is described as: JI πz Sz → I x cos(πJt ) + 2 I y Sz sin(πJt )  JI πz Sz → − I x  Ix ( I( Sα) x x y Ix y Σ= x y I(Sβ) y 2IySz x x y -I x FIGURE 4.LECTURE COURSE: NMR SPECTROSCOPY steps in 2D experiments.S Eighth Chapter: The product operator formalism Pg.r.St) or as anti-phase splitting if the operator is 2IySzsin( πJI. multiple-quantum coherence) Two operators that are both transverse cannot evolve scalar couplings amongst each other! The product operators can be directly related to the appearance of signals. Vectorial representation of the states due to evolution of scalar couplings A number of operators are frequently encountered during the calculations: • • • • • • Ix.

Using the POF we can summarize the events for a 2-spin system. 180 deg.4 A simple one-dimensional NMR experiment: A conventional one-dimensional experiment for recording proton spectra looks like the following: x FIGURE 5. Sx. The events are subsequently calculated: • 90 degree x-pulse: Iz • chemical shift evolution − Iy • ωtI z → − I y cos(ωt ) +  I x sin(ωt ) I 90(→ − I y x ) scalar spin. (In the following. shaded rectangles.spin coupling: I x sin(ωt ) Jt ( I z S z π)→ − I y cos(ωt )cos(πJt ) + 2 I x Sz cos(ωt )sin(πJt )  − I y cos(ωt ) + + I x sin(ωt )cos(πJt ) + 2 I y Sz sin(ωt )sin(πJt ) Note that chemical shift and scalar coupling may be calculated in arbitrary order (but not the effect of pulses and shift/coupling!). Usually.LECTURE COURSE: NMR SPECTROSCOPY 1. During a pulse sequence all possible interactions have to be calculated which may lead to a huge number of terms. 90 degree pulses are drawn as narrow.. However. only a limited number of terms lead to detectable magnetization at the end and only those are of interest because they contribute to the signal: • • • directly observable are only single operators that contain transverse terms (Ix. A 90 degree RF pulse applied along the x-axis is immediately followed by data acquisition.Iy. pulses as black.) antiphase magnetization (such as IySz) evolves into in-phase magnetization (-Ix ) if the corresponding coupling is resolved terms that contain more than one transverse operator are not observable and hence can be ignored in the end of the sequence Pg. one starts with pure z-magnetization. Sy.110 Eighth Chapter: The product operator formalism . wider rectangles). A simple 1D experiment consisting of a 90° pulse followed by sampling of the FID.

13C pair. Eighth Chapter: The product operator formalism Pg.S coupling refocussing of I shift evolution of I. 1. In this context it is very important to distinguish two cases: • both spins I and S experience the 180 degree pulse which is usually the case if they are both protons (homonuclear case) only one of the two nuclei experiences the pulse which is the case for a 1H.or the βstate. When this coupling partner is flipped from the α.LECTURE COURSE: NMR SPECTROSCOPY Certain terms that are of negligible intensity can be removed during the calculation thereby largely reducing the number of operators. Effects of 180° pulse(s) on shift precession and evolution of scalar couplings We have seen before that the two dublet lines arising from spin. 180 degree pulses will flip spins from the α.S coupling FIGURE 6.5 The effect of 180 degree pulses: 180 degree pulses are often used to • • refocus chemical shift refocus scalar couplings When a 180 degree pulse is placed in the centre of a delay it will refocus chemical shift evolution of transverse magnetization (see left part of the following figure).into the β-state or vice versa the coupling evolution will be refocussed after a time that is the same as the one during which the system was allowed to evolve the coupling. Only the latter leads to decoupling.S coupling I shift evolution refocussing of I.spin coupling are due to different spins that have neighbouring spins in either the α. In the first case both spins are simultaneously flipped and no overall effect occurs.111 • .into the β-state: Iα 180→ I β  Iβ 180→ I α  The effect of 180 degree pulses are summarized in the following figure: I ∆ ∆ ∆ ∆ ∆ ∆ S refocussing of I shift refocussing of I.

multiple-quantum coherences are formed: 2 I y Sz 2 I y Sz y  → 2 I y Sz 90° ( I ) [2 b ] [3b] 90°( S x )→ − 2 I y Sy  Through the coherence transfer step transverse I-spin magnetization has been transformed into transverse S-spin magnetization. Eighth Chapter: The product operator formalism Pg. S )→ 2( − I y )( − Sz )  ∆ → − I x  1. Note that in the homonuclear case steps [2] and [3] can be achieved with a single pulse.LECTURE COURSE: NMR SPECTROSCOPY The refocussing of chemical shift can be described with the product operator formalism easily in the following way: Ix ∆ → I y  180( x )→ − I y   ∆ → I x  and for evolution of heteronuclear scalar couplings: Ix ∆ → 2 I y Sz  180( S )→ 2 I y ( − Sz )   ∆ → I x  However. It is also important to realize that step [2] requires the phase of the 90˚ pulse to be x.6 Coherence transfer: Coherence transfer is the crucial step of • • polarization transfer experiments (INEPT. homonuclear scalar couplings are not refocussed since both spins are flipped: Ix ∆ → 2 I y Sz  180( I .DEPT) multidimensional correlation experiments In order to transfer coherence couplings must have been evolved. Antiphase Ispin coherence is then transferred into antiphase S-spin coherence: Ix πJt ) I z S (z →  I x cos(πJt ) + 2 I y Sz sin(πJt ) [1] 2 I y Sz 2 Iz Sz 90°( I x )→ 2 Iz Sz  90°( S x )→ − 2 Iz Sy  [2 a ] [3a] When the time t during which scalar coupling takes place is exactly equal to (2J)-1 sin(πJt)=sin(π/2) and I-spin coherence has quantitatively been transformed into antiphase coherence. Otherwise.112 .

113 .and β-states according to the Boltzmann distribution.7 Polarization transfer: Polarization transfer is a common building block in pulse-experiments to increase sensitivity. We have seen before that this number depends on the relative populations of α. Using the POF the INEPT sequence can be summarized in the following way: Iz 90°( I x )→ − I y  2 J ( I. Pulse sequence for INEPT experiment (1H. However.13C polarization transfer).H) 1H 13C FIGURE 7. this Eighth Chapter: The product operator formalism Pg. we need a 180˚ pulse in the center of the proton delay.H) 1/4 J(C. The higher the energy gap between the two states the larger the population difference and hence the stronger the intensity of the signal. However. The sensitivity is proportional to the number of spins that can undergo a certain transition. The prototype for the PT sequences is the INEPT experiment: x y 1/4 J(C. one might be tempted to remove the 180˚ pulses on the proton and carbon channel. 13C spectra are much lower in sensitivity because • • the natural abundance of 13C is 1/100 of that of protons the energy separation between α. chemical shift evolution would then take place for protons transforming 2 I x Sz ωtI z → 2 I x Sz cos(ωt ) +  2 I y Sz sin(ωt ) The second term would be transformed into non-observable multiple-quantum coherence through the cascade of the following two 90˚ pulses: 2 I y Sz sin(ωt ) y  x →  90° ( I . Polarization transfer is aimed at bringing the population difference from protons to carbons and hence increasing the sensitivity.S  )→ 2 I x Sz  1 y  → − 2 Iz Sz 90° ( I ) 90°( S x )→ 2 Iz Sy  In principle.LECTURE COURSE: NMR SPECTROSCOPY 1.and β-states is γ(13C)/γ(1H)=1/4 and hence the number of transitions are much lower. S ) − 2 I y Sy sin(ωt ) Therefore.

LECTURE COURSE: NMR SPECTROSCOPY proton pulse would unfortunately decouple protons from carbons. Since CH and CH3 carbons can usually be distinguished on the base of their chemical shifts. The dependence of the signal intensity for CH3.CH2 and CH carbons on the proton pulse length is shown below: CH CH3 CH2 45° 90° 135° FIGURE 8. Of course. a 180˚ pulse on the carbon channel is additionally required in order to avoid decoupling. For β =90 degrees. and we do need the coupling evolution for the transfer. The editing is achieved through suitable choice of the length of the final proton pulse in the sequence. Hence. Non-proton bearing carbons are missing in DEPT spectra. Transfer amplitudes for CHn (n=1-3) groups in DEPT experiments in dependency of the flip angle of the final proton pulse. only CH carbons are contained.114 . For β=135 degrees. a DEPT-135 experiment is mostly sufficient but should be complemented by a DEPT-90 in case of ambiguities for CH3/CH. methyl and methin carbons are positive and methylen carbons are negative. a double PT 2D experiment can be used to increase the senitivity Eighth Chapter: The product operator formalism Pg. At the end of the PT sequence the amount of transverse cabon magnetization depends on the Boltzmann distribution of the proton levels which is much more favourable! An experiment that has become even more popular than INEPT is the DEPT sequence. a large variation of coupling constants leads to cross-talk in the edited spectra. The important achievement of the PT sequence is that the amount of antiphase carbon magnetization is proportional to the starting I-spin magnetization which is Iz=(Iα-Iβ). The DEPT experiment allows to record 13C spectra that are edited with respect to the number of protons that are directly bonded to the carbons. The DEPT sequence relies on uniform 1J (CH) coupling constants.

Comparison of sensitivity of carbon-detection experiments without PT ( inverse-gated 13C. 13C{1H}). HSQC) Eighth Chapter: The product operator formalism INEPT Pg. 100% isotopic abundance) γ(13C)5/2 γ(13C)5/2 + NOE γ(1H)(13C)3/2 γ(1H)5/2 RD Decoupling Decoupling Decoupling RD RD inverse-gated 13C 1H 13C 13C 1H RD 13C 13C{1 H} FIGURE 9.LECTURE COURSE: NMR SPECTROSCOPY further such as the HSQC experiment: Sensitivity (fully relaxed.115 HSQC 13C 1H 1H t1 Decoupling . and with PT (INEPT) and with 1H detection (2*PT.

Assume we have two state vectors. The scalar product of two different states is 〈ψ'|ψ''〉 = 〈ψ'|ψ'〉 + 〈ψ''|ψ''〉 + 2 〈ψ'|ψ'〉 1⁄2 1⁄2 〈ψ''|ψ''〉 cos φ in which the component printed in bold indicates the amount of interference between the two states. |ψ> is called a state vector and |α> and |β> are the basis states. The scalar product of the two vectors is defined as: 〈ψ | ψ 〉 2 2 2 = c1 + c2 which is the square of the length (norm) of the state vector ψ: |α> C1 |α> |ψ> “ |ψ> |ψtot> φ C2 ‘ |ψ> |β> |β> The length of the state vector |ψ> is interpreted as the probability of finding the spin system in a particular state. one describing the final state: |ψ i〉 = c 1i |α〉 + c 2i |β〉 |ψ f〉 = c 1f |α〉 + c 2f |β〉 Eighth Chapter: The product operator formalism Pg.LECTURE COURSE: NMR SPECTROSCOPY Excurs: The foundations of the product operator formalism: The wavefunction for the state of a one-spin system can be formulated as |ψ 〉 = c 1 |α 〉 + c 2 |β 〉 in which the coefficients c1 and c2 indicate to which extent the spin occupies the α or β state. We can now define an operator A that transforms ψ'' into ψ’: |ψ''〉 = A |ψ'〉 Often in NMR these transformations are rotations in 3D space that do not change the length of the vectors (so-called “unitary transformations”) and the operator is a rotation matrix. <ψ'|ψ’’> is interpreted as the probability to go from state ψ’ to ψ’’. The basis states are orthogonal vectors in Hilbert space (a N-dimensional vector space for a system with N basis states with some special properties).116 . one describing the inital state of the spin system.

LECTURE COURSE: NMR SPECTROSCOPY To mathematically express the transformation we can arrange the state vector of the initial state as a column vector and the state vector ofthe final state in form of a row vector and write: c 1i c 2i A 11 A 12 A 21 A 22 = c 1f c 2f The time-evolution of the density matrix is described by the Liouville-van Neumann Equation: d σ ( t ) = – i [ H. Cp = 0 or  Cq  p → Cq cosθ C C [ ] + i Cq . shift etc. Cp ≠ 0 [ ] The basic rotations are: z 2IzSz z x y Ix 2IySz Eighth Chapter: The product operator formalism Pg.117 .). σ ( t 0 ) ] dt in which H is the Hamiltonian describing the interaction (coupling. The commutator – i [ H. Cp sin θ [ ] if Cq . σ ( t 0 ) ] = – i ( Hσ – σH ) The time evolution of the spin states can be expressed as: Cq  p → Cq  if Cq .

Two-dimensional experiments can be classified into certain groups: Ninth Chapter: 2 dimensional NMR experiments Pg. which allows to correlate frequencies: ΩΑ ΩΒ ΩΒ C D F1 D C ΩΑ F2 FIGURE 1. TWO-DIMENSIONAL NMR SPECTROSCOPY: The introduction of two-dimensional NMR spectroscopy has largely increased the potential power of NMR as a tool for structure elucidation of larger molecules.118 . Homonuclear 2D spectra are usually symmetric about the diagonal. those of the indirect dimension were derived from the second Fourier transform of the amplitude modulated signals. F1=ΩB are called cross-peaks.LECTURE COURSE: NMR SPECTROSCOPY 1. Off-diagonal peaks at the frequency F2=ΩA. The two frequency domains are called the direct (F2) and the indirect (F1) frequency domains. It's main advantages are: • • dispersion of signals into two orthogonal dimensions and identification of correlations The 2-dimensional NMR experiment is characterized by the introduction of a second frequency axis. The diagonal contains the one-dimensional spectrum. and they indicate the spins with frequencies ΩA and ΩB are correlated. Frequencies of signals in the direct dimension have been directly detected in the receiver coil. Appearance of homonuclear COSY spectrum with crosspeaks (C) and diagonalpeaks(D).

The signal of the spin B. F1: chemical shift of spin B for crosspeaks) J-resolved experiments.LECTURE COURSE: NMR SPECTROSCOPY • homonuclear correlated spectra that contain frequencies of similar nuclei in both dimensions (e. Ninth Chapter: 2 dimensional NMR experiments Pg.g. • Similarly experiments can be subdivided into • shift-correlated 2D experiments. The 2D data matrix is recorded by performing a set of 1D spectra. 1H. varies in amplitude from experiment to experiment. then chemical shift labelled during the evolution period. 1H. magnetization is detected on the spin B. • Each pulse-sequence for a 2D experiment contains the basic elements Preparation (Excitation of spin A) Evolution (Chemical Shift labelling of spin A) (Coherence transfer to spin B) Mixing Detection FIGURE 2.119 . Finally.g. INADEQUATE) heteronuclear correlated spectra that contain frequencies of different nuclei (e. For the example of the F1=ΩA. magnetization is transferred from spin A to spin B in the mixing period.1H COSY. F1: Jcoupling of spin A). that link two spins via their chemical shifts (F2: chemical shift of spin A.13C correlations) in different frequency dimensions. which is detected. Subsequently. that separate chemical shift and J-coupling information in two orthogonal frequency dimensions (F2: chemical shift of spin A. Building blocks of 2D experiment. F2=ΩB crosspeak the spin A is excited in the preparation period. in which a delay called the evolution time is systematically incremented.

1. it is a simple 90 degree pulse for excitation. Some experiments that correlate carbon (or nitrogen) with proton frequencies use an initial INEPT polarization transfer from proton to carbon to increase sensitivity (dramatically). The 2D spectrum is yielded from a two-dimensional Fourier transformation: FIGURE 3. the preparation period serves to create transverse coherences.1 The preparation period: In principle. In a proton. Translation of the amplitude modulation of a signal into the frequency of the indirect dimension through Fourier transform. These experiments are the so- Ninth Chapter: 2 dimensional NMR experiments Pg.120 .proton correlation experiment like the COSY.0.LECTURE COURSE: NMR SPECTROSCOPY and the modulation frequency of the signal intensity corresponds to the chemical shift of the spin A.

S )→ 2 I x Sz  ∆ y  y → 2 Iz Sx  90° ( I .121 . Fourier transform of the t1domain data yields the frequency dimension F1 and t2 corresponds to F2. Frequency labelling in the indirect dimension is done analogously. the corresponding time is called t1 in contrast to t2 in the direct detection dimension. the width of the spectrum in Hz): dw = 1 SW The resolution depends on the number of data points sampled and the spectral width (neglecting relaxation effects). S ) 1.LECTURE COURSE: NMR SPECTROSCOPY called inverse-detection experiments. However. In order to understand how frequency labelling in the indirect dimension is achieved. The signal is sampled in discontinuous mode: (td =16) DW AQ FIGURE 4. Ninth Chapter: 2 dimensional NMR experiments Pg.2 The evolution period: The evolution period is the pulse sequence element that enables frequency labelling in the indirect dimension. Consecutive data points are separated by a dwell time. The length of the dwell time is related to the spectral width (SW. Sampling of data in the direct dimension. Usually. it is useful to recall how the frequencies in the direct dimension are sampled.0. In the product operator formalism the preparation is described as Iz 90° x → − I y   or in the case of inverse-detection experiments: Iz 90°( I x )→  − Iy − ∆ −180 ( I .

TOCSY-type experiments) dipolar couplings (NOESY/ROESY type experiments) chemical exchanges (EXSY type experiments) In product operator language the mixing for the COSY-type experiments is described as 2 I x Sz y  y → 2 Iz Sx  90° ( I . the term just before the transfer step can also be IySz(instead of IxSz). transverse I-spin coherence is transferred into transverse S-spin coherence. Since the evolution time is incremented systematically in successive FIDs the frequency in the indirect dimension is sampled analogously to the one of the direct dimension. This is schematically shown in the figure on the following page for signals that lead to diagonal peaks (no magnetization transfer during the sequence).3 The mixing period: The many 2D experiments differ in the way they transfer magnetization from spin A to spin B. Because the mixing step separates the t1 and t2 periods. a mixture of double. Possible transfer-sequences may rely on • • • scalar couplings (COSY. The signal precesses during t1.0. which cannot Ninth Chapter: 2 dimensional NMR experiments Pg. such a transfer step will lead to signals corresponding to crosspeaks after 2D FT.and zero-quantum coherence.122 . However. During a 2D experiment a series of 1D spectra is recorded which differ by the fact that the evolution time has been systematically incremented from experiment to experiment. depending on the chemical shift evolution of the I spin in t1. Application of a 90° pulse with phase y on the I and S spin will give IySx. that means in the construction of the mixing process. S ) Herein. In the product operator formalism frequency labelling is described as: Ix t1 → I x cos(ω I t1 ) +  I y sin(ω I t1 ) 1. Operators like IxSz evolve with the chemical shift of the spin I whereas operators like IzSx evolve with the shift of spin S. Depending on the length of the evolution period more or less of the magnetization will be turned onto the z-axis thereby modulating the intensity of the remaining signal.LECTURE COURSE: NMR SPECTROSCOPY data points are taken in separate 1D experiments.

LECTURE COURSE: NMR SPECTROSCOPY be observed.123 PREPARATION EVOLUTION MIXING DETECTION FID in F2 . COSY-type mixing in the vector model Ninth Chapter: 2 dimensional NMR experiments Pg. FID in F1 FT(F2) 1 2 3 4 5 FIGURE 5.

) are in principle of the COSY-type. Thereby. 1.0. Magnetization flow for coherence transfer between spins A and B.5 Hetcor and inverse-detection experiments: The heteronuclear correlation experiments (Hetcor.LECTURE COURSE: NMR SPECTROSCOPY PREPARATION EVOLUTION MIXING Spin A α β β α α Spin B β FIGURE 6. The TOCSY transfer is different in the way that in-phase magnetization is transferred at twice the rate: Ix 180° " "→ Sx  For the NOESY mixing the description is Iz τ m → ( − )Sz  Some of the more advanced triple-resonance experiments mixing includes magnetization relay via many nuclei of possibly different nature. Inverse detection experiments include an additional INEPT-type proton-heteronucleus polarization transfer step. HMQC. the mixing pulse must be applied for both kinds of nuclei (1H and 13C) separately. 1. the sensitivity is increased according to Int ∝ γ ex 3/ γ det2 In addition. etc.124 .0. faster pulsing is possible since the proton T1's are usually much Ninth Chapter: 2 dimensional NMR experiments Pg. However.4 The detection period: The detection period simply comprises acquisition of the FID with or without heteronuclear decoupling.

The prototype inverse detection experiment. The experiment contains two polarization transfer (INEPT) steps.1H] spectra is suppression of protons bound to 12 C. Ninth Chapter: 2 dimensional NMR experiments Pg.1 Phasecycling: A large problem in [13C. homonuclear heteronuclear (X detection mode) Preparation heteronuclear (1 H detection mode) Preparation Excitation Evolution Evolution PT-Transfer to X-nucleus Mixing PT-Transfer to X-nucleus Evolution Detection Detection PT-Transfer back to proton Detection FIGURE 7. Building block of HSQC experiment.LECTURE COURSE: NMR SPECTROSCOPY shorter than those of 13C or 15N. Preparation INEPT Evolution Re-INEPT Detection ∆ ∆ t1 ∆ ∆ DEC 1H 13C Hz Hy 2HxCz 2H zC y 2H yCz cos(ωC t1) 2H zC ycos(ωC t1) 2HyCz cos(ωC t1)cos(ω Ht2) FIGURE 8. the HSQC (heteronuclear singlequantum coherence) experiment is shown below. Building blocks of homonuclear (left) and heteronuclear (middle and right) experiments. 1.125 .

which belong to the 1H-13C fragment) are inverted when the phase of the first 90˚ carbon pulse is shifted by 180˚. Usually the NMR spectroscopist spends a considerable amount of time to have maximum field homogeneity over the sample volume.2 An Alternative: Pulsed Field Gradients By applying pulsed field gradients the homogeneity of the external magnetic field is destroyed and spins with the same chemical shift are defocused to a degree which depends on their location in the probe. When the receiver phase is inverted too addition of the two FIDs leads to cancellation of the central proton line (the one that belongs to the 1H-12C fragment). unstable measuring conditions will cause incomplete cancellation. Coherence selection in HSQC spectra and origin of t1 noise in HSQC spectra and 1. and the centre signal will show up as t1 noise: FID1 φ 1 =x φ Rec =x 1 J C.126 . Clearly. If such a gradient would be applied during signal acquisition a broad signal corresponding to a wide range of frequencies would be observed instead of a sharp line. The crucial point is that the amount of dephasing is proportional to the coherence level of the spins at the time the gradient is applied. By detuning the z-shim starting from a perfectly shimmed magnet a linear B0 gradient is created along the sample axis so that spins in the upper part of the tube have higher frequencies than those at the bottom.H φ 1 =-x φ Rec =-x FID2 1 H 13 C ∆ ∆ ∆ ∆ φ t1 HSQC DEC Σ FIGURE 9.LECTURE COURSE: NMR SPECTROSCOPY This is achieved through phase-cycling of the first 90˚ pulse on the carbon channel. Double-quantum coherences are dephased by twice the amount than single Ninth Chapter: 2 dimensional NMR experiments Pg. The satellite lines (those proton lines.

Because spectra are recorded without addition/subtraction of scans. The 2:1 ratio of the two gradients ensures that the desired coherence pathway has been selected: A B C t1 D Gz BO Gz BO FIGURE 10. (A) DQF-COSY sequence with application of gradients (B). carbon single quantum coherences can be refocused by a gradient of opposite sign and appropriate strength. Effect of field gradients on isochronous spins at different locations in the probe. it's coordinate Zi in the probe and the duration τ: ∆υ ∝ pi γ i Zi Gzτ By applying a gradient of the same strength but opposite sign.LECTURE COURSE: NMR SPECTROSCOPY quantum coherences. and. the gyromagnetic ratio γi of the spin. no further scans are needed provided the S/N is sufficient. Alternatively. coherences of the same order are rephased again. At the end of the sequence (when singlequantum coherences are existent) a read-out gradient is used of half the strength to refocus the gradient. (C) selected coherence transfer pathway. Usually at least two gradients are applied during the sequence. (D) vector representation of isochronous spins during the experiment. the strength and sign of the applied linear field gradient pulse Gz. Since dephasing and rephasing is done within the same scan. In the doublequantum filtered COSY experiment a gradient is applied during the time double-quantum coherence is exists.127 . The change of the lamor frequency is proportional to the order of coherence pi. after magnetization transfer to carbon-13. Ninth Chapter: 2 dimensional NMR experiments Pg. proton coherences can be labelled using a pulsed field gradient. zero-quantum coherences are not dephased at all.

LECTURE COURSE: NMR SPECTROSCOPY instrumental instabilities are less pronounced and therefore two-dimensional experiments tend to contain much less t1 noise. A second disadvantage stems from the relatively long duration of gradients and the time required for re-establishing the homogenous field. a HSQC-NOESY on natural abundance is very insensitive. For small molecules with small NOE enhancements. Classical examples are HMQC/HSQC experiments coupled with a subsequent TOCSY or NOESY (ROESY) transfer step. One obviously useful field for application lies in oligosaccharide NMR. solvent suppression is superior. 12ms) coherence transfer in HSQC-TOCSY experiments is limited to neighboring protons. Then. such a HSQC-NOESY can be a rather sensitive experiment for larger molecules (those that give strong NOE enhancements). the sensitivity of the correlations is reduced when compared with the HSQC experiment. This is especially helpful in case of overlap of proton frequencies. not only the direct (1J(C. Obviously. In case of isotropic enrichment. information from such an experiment is similar to that of COSY spectra but signals are dispersed along the carbon dimension making it a very valuable experiments for (oligo)saccharides or peptides. as is the case for NOESY or TOCSY experiments. in which the second time variable is kept constant.1H] HSQC-TOCSY experiment correlates not only the anomeric proton with its carbon but also with the neighboring protons. In these experiment. Furthermore. a [13C.H) connectivities are observed. diffusion leads to a significant loss of magnetization. Whenever dephasing and rephasing intervals are separated by a long delay.g. no saturation transfer due to fast exchanging protons is possible and signals with identical chemical shifts to those of the solvent can easily be observed.3 Hybrid 2D techniques: Hybrid experiments are very similar to three-dimensional NMR experiments. 1. Ninth Chapter: 2 dimensional NMR experiments Pg.128 .When the mixing time is limited (e. For example. but also connectivies to other (mostly vicinal) protons of the proton spin system.

normal 2D experiment. for long mixing times all protons within the same spinsystem are correlated double-quantum spectroscopy identification of degenerate methylene protons TQF-COSY identification of glycine residues in peptides X-filtered Exp. abundance samples. carbon correlation experiments for nat.4 Overview of 2D experiments: homonuclear shift correlated spectra via scalar couplings (DQF)-COSY vicinal/geminal protons correlated COSYlr COSY optimized for small couplings (long-range couplings) INADEQUATEmostly used for carbon. relay-COSY COSY with additional relay step TOCSY experiment with multiple proton relay. but only spins that have an additional coupling to a heteronucleus are displayed via dipolar couplings NOESY correlation via dipolar interaction ROESY rotating frame analogue of the NOESY exchange spectroscopy EXSY correlates exchanging protons (chemical and conforma tional exchange) heteronuclear shift correlated spectra via scalar coupling Ninth Chapter: 2 dimensional NMR experiments Pg.LECTURE COURSE: NMR SPECTROSCOPY 1H ∆ ∆ ∆ ∆ t1 DEC spinlock 1H 13 C H C ∆ ∆ ∆ ∆ spinlock DEC 13 C H C t1 t1 HSQC TOCSY HSQC-TOCSY HSQC HSQC-TOCSY H H H F1=13C C A -CB-CC ΩΑ ΩΑ C A-C B-CC ΩΑ ΩΒ F2=1H ΩC ΩΑ F2= 1H FIGURE 11. 1. Building blocks of HSQC-TOCSY experiment and information content of the spectra.129 F1=13C H H H .

W. 1982.. E.... Wüthrich. U. A.. Chem. Ernst. Chem. J. 104. O. W. Bodenhausen. Ernst. R. 2229-2246. the following experiments include an additional TOCSY/NOESY/COSY transfer step: H(S)MQC-TOCSY H(S)MQC-NOESY H(S)MQC-COSY via dipolar couplings HOESY correlation via heteronuclear dipolar NOE) Experiments for measurement of J-couplings homonuclear j-resolved experiments heteronuclear j-resolved experiments ECOSY HMQC-J interaction (via 1.. R. O. J. J. E. carbon correlation via longrange (2J. 1976.. Soc. Phys. 85. Sørensen. R. 117. C. R. M. Magn. Biochem. Biophys. R. R. Reson. O. COSY-DQF: Piantini. Chem.HSQCcorrelation of directly bonded protons HMBC proton. W. 3 J) couplings 1H detected experiments HMQC. 44. Am. Sørensen.COSY: Griesinger. Commun. R... 6800-6801. 1983. COSY-LR: Bax.. Ernst.5 Original references for 2D experiments: COSY: Aue. 479-485. P. W. G. 6837.130 . Phys. Sørensen. 1986. Batholdi. Freeman.. Ernst. 1981. R. 542-561..LECTURE COURSE: NMR SPECTROSCOPY 13 C detected experiments hetcor correlation of directly bonded protons and carbons COLOC proton. G. K. Wagner. 64. J. R. Res. carbon correlation via long3 J) couplings and carbons range (2J. Rance. Ninth Chapter: 2 dimensional NMR experiments Pg.

Braunschweiler. 521-528. Soc. 1979. Griffey. Chem. Meier. J. 4849-4851. Ernst. R. INADEQUATE: Bax. 103. 1st ed. Summers. Lett. R. A. L.. D. B. G. J. 811813. Davis. M. 2102-2104. Soc. Magn. HSQC: Bodenhausen. Soc.. HMQC: Bax.. B. A. 101. R.. Reson. Magn. 4546.. Reson. Phys. 1981. 1980. 69. Magn. G. 1983. Chem. Lee. 63. 207-213. 1985. Ruben. Wiley: New York. Am. 1979. H. J. Reson. 1983. A. Bax. L. Freeman. J. P. A.. Bachmann. Hawkins.. G.. Ernst. L. Stephens. Chem. L. R. 1986. R. S. 65. Chem. 102. J. ROESY: Bothner-By.131 . 106. Chem. 185-189. Soc. D. 1980. 301-315. 71. J. D. J. P. K.. Am. Magn. 4481-4484. NMR of Proteins and Nucleic Acids. 355-360. J. A. Müller. J. Chem. J. HMBC: Bax.. NOESY: Jeener. A. J.. 1984. Soc. Am.LECTURE COURSE: NMR SPECTROSCOPY TOCSY: Bax. 108. T. A. 1986. A. 1985. Am. 55. Davis. Wüthrich.. Chem. Reson.. J... A.. Ninth Chapter: 2 dimensional NMR experiments Pg. H. Phys.. 53. Kempsell. Freeman. Am. Frenkiel.-M. R. 2093-2094. J. R. R. Bax.

Although similar interactions are also encountered in the liquid state they are averaged out due to rapid tumbling of the molecules. SOLID STATE NMR SPECTROSCOPY: Solid-State NMR spectroscopy is increasingly being used for a number of reasons: • • it allows to probe properties in the solid state (-> material sciences) it enables to structural characterize insoluble compounds such as (synthetic) polymers it has per se no moleccular size limit and therefore is of advantage when looking at very large systems (e.1 The chemical shift It has been recognized very early on that the resonance frequency of a nucleus is influenced by the surrounding electrons. The typical range of various interactions is listed in the table below (from Ref.): interaction nuclei 1H typical magnitude ~15 ppm ~200 ppm ~200 ppm < 10 ppm < 140 ppm < 200 ppm ~22 kHz ~20 kHz 4. For non-sp3 hybridized carbons the anisotropy can be as large as 150 ppm and even larger values are encountered for heavier elements. a number of additional interactions do appear that complicate spectra to an extend that they become essentially useless unless they are experimentally removed. Eleventh Chapter: Solid-State NMR spectroscopy Pg. membrane-proteins embedded in bilayers) • However. Williamson et al.LECTURE COURSE: NMR SPECTROSCOPY 1.g.132 .5 kHz 2 kHz < 1 kHz chemical-shift range 13C 15N 1H anisotropy of CSA 13C 15N 1H-13C 1H-15N one-bond dipolar coupling 13C-13C 13C-15N 15N-15N 1. For nuclei with non-spherical electron distributions the shielding effect depends on the orientation of the electron cloud with respect to the static field B0. We will therefore shortly review basic interactions that are important for solid-state NMR applications.

which reflects the deviation from axial symmetry: η = ( σ xx + σ yy ) ⁄ δ The orientation of the shift tensor is depicted below: z δ xx Bo O 13 C x y z δ yy Bo O 13 x C y z δ zz Bo 13 C x O y δ Eleventh Chapter: Solid-State NMR spectroscopy Pg. For the shielding tensor the z-axis points into the direction of the largest electron density. Such a system is called the principal axis system (PAS). The parameter δ is the anisotropy and reflects the deviation from cubic symmetry σ δ =  σ zz – -.133 . σyy and σzz. The trace of the tensor (by convention σzz ≥ σxx≥ σyy) σ = ( σ xx + σ yy + σ zz ) ⁄ 3 denotes the isotropic value of the shielding tensor.LECTURE COURSE: NMR SPECTROSCOPY The chemical shift tensor σ denotes the tensor required to transform the Bo field vector into the vector Beff representing the effective field: Beff x Beff y Beff z σ xx σ xy σ xz 0 = σ yx σ yy σ yz ⊗ 0 B0 σ σ σ zx zy zz By suitable choice of the coordinate system the chemical shift tensor only contains the diagonal elements σxx.  3 and η the asymmetry. is rotationally invariant and corresponds to the shift observed in isotropic solution.

For nuclei with cubic symmetry (e.5 Note that in crystalline material orientations are non-random! Sample preparation is very important for solid-state NMR applications: 13 C 15 N (a) (b) (c) 70 60 50 40 30 20 10 140 130 120 110 100 ppm The figure above displays 13C and 15N MAS spectra of antamanide from a) lyophilized powder. The examples depicted at the left correspond to axially symmetric ligand fields. Structural disorder or inhomogeneity represents a major issue in solid-state NMR applications! Eleventh Chapter: Solid-State NMR spectroscopy Pg. Williamson et al. The powder lineshapes are characteristic for the magnitudes of anisotropy δ and asymmetry η. 15N in NH4) even sharper signals are observed: σxx σyy δ>0 σzz η=0 σxx σyy σxx σyy σzz σzz η=1 η=0. b) and c) microcrystalline powder obtained by evaporation of solvent with different protocols (see ref.).134 .LECTURE COURSE: NMR SPECTROSCOPY In a non-crystalline powder sample the nuclei are randomly oriented and the observed chemical shift tensor corresponds to the statistical average over all possible orientations.g.5 σxx σyy δ<0 σyy σzz σyy σzz η=1 σzz η=0 η=0.

and for hetereonuclear couplings: HII = -d/2 (3 cos2β-1) 3I1ZI2Z . Eleventh Chapter: Solid-State NMR spectroscopy Pg. For spins with I≥1. it is very important to remove heteronuclear scalar couplings to increase resolution (and hence sensitivity) in the spectra. Due to the increased line-widths sensitivity is an important issue in SS-NMR. d = (µo/4π) hγIγS/rIS3 d = (µo/4π) hγI2/rII3 In solution. Note that dipolar couplings have recently also been introduced into solution NMR by the use of weakly aligned systems for recording residual dipolar couplings (RDCs).2 Dipolar couplings: Dipolar couplings depend on the orientation of the vector that connects the two nuclei relative to the static field.I1I2. but those will not be described here. However. In the solid state no such rapid rotation exists and hence the dipolar couplings give rise to line splittings which can easily exceed 10 kHz in magnitude. and the quantities required are usually much larger than for solution-state NMR. Solid-state NMR experiments fundamentally suffer from the additional dipolar interactions and from the chemical shift anisotropy. on the separating distance and on the β r µA µB gyromagnetic ratios of the two nuclei involved. RF irradiation schemes similar to those used to remove heteronuclear couplings in solution are applied. For dipolar couplings the Hamiltonian is: is homonuclear couplings HIS = -d (3 cos2β-1) IZSZ . dipolar couplings are averaged to zero due to rapid (rotational) motion of the molecules (but give rise to the important relaxation phenomena). Because these dipolar couplings can be so large they are not only observed between direct neighboring nuclei but also longerreaching interactions are encountered. quadrupolar couplings exist.LECTURE COURSE: NMR SPECTROSCOPY 1. The scalar (J) couplings do not fundamentally differ from the quantities observed in isotropic (solution) phase.135 .

To a large extend this line-broadening can be removed by spinning the sample about the magic angle 54.3 Magic Angle Spinning (MAS) The effects from chemical shift anisotropy and dipolar couplings lead to excessively broad lines. the sample is placed in a cylindrical rotor which is rapidly spun (up to 30-50 kHz) about an axis that is tilted by 54° away from the direction of the static field.): static B0 θ m = 54. In SS-NMR applications proton detection is less favorable due to the large number of homonuclear dipolar interactions. is a much less sensitive nucleus.7° ωr 5 kHz 10 kHz 270 240 210 180 150 120 90 60 30 0 -30 δ [ppm] At the lower frequencies spinning sidebands fall into the spectral regions of interest.136 .4 Sensitivity Enhancement: Solution-state NMR normally utilizes proton detection experiments due to the high gyromagnetic ratio of protons which makes this nucleus very sensitive. MAS). For this angle the second-order legendre polynomial (3cos2β-1)/2. however. Upon rising the spinning frequencies those bands occur outside the spectral region. In MAS. vanishes. The broad lines observed in the powder spectrum collapse into rather sharp lines which occur at the position of the isotropic chemical shift. Carbon.LECTURE COURSE: NMR SPECTROSCOPY 1. which describes the angular dependence in both the dipolar coupling as well as in the chemical shift Hamiltonians. The tremendous line-narrowing effects due to MAS are displayed in the powder 13C spectra of 13C. Polarization-transfer techniques are therefore employed to Eleventh Chapter: Solid-State NMR spectroscopy Pg.74° (magic-angle spinning. 1. and mostly carbon detection is used instead. Williamson et al.15N labeled glycine below (from ref. Unfortunately spinning the samples at high frequencies does heat up the sample (tens of degrees!) and the heating effect must be removed by cooling the rotor appropriately.

One way to yield information on spin-interactions is to spin the sample more slowly and extract spin interaction parameters from spinning side-band amplitudes.5 Recoupling techniques in SS-NMR: Whereas magic-angle spinning (MAS) leads to significant line-narrowing in 1D spectra. The extend by which magnetization can be transferred to the heteronucleus by Hartmann-Hahn cross polarization transfer depends on the mixing time. Eleventh Chapter: Solid-State NMR spectroscopy Pg. In this technique B1 fields are simultaneously applied to the proton and carbon spins such that the precession frequencies of the two spins are approximately equal (γΗBH ≈ γCBC). A more commonly technique used nowadays is to re-introduce spin-interactions by recoupling techniques. A two spin system has been used and interactions other than dipolar couplings are neglected. Thereby. the removed interactions need to be re-introduced in order to yield distance or (dihedral) angle information. The basic idea behind recoupling techniques is that the averaging of spatial-dependent parameter such as dipolar couplings or chemical shift anisotropy under MAS can be removed if RF pulses are applied in rotor-synchronized fash1.137 . This technique may therefore be use to derive distance information of pairs of nuclei: Distance in Å 1. and advantage can be taken from the much shorter T1 of protons (higher repetition rate).5 I S 2. but also on the distance between the nuclei. 1. carbon polarization can be enhanced by up to a factor of four (γΗ/γC). Due to the four-fold higher γ of protons the energy difference between α and β-states is much larger for protons and hence the population difference is also larger.5 3.5 3 6 Mixing time [ms] Fig. Right: Signal buildup curves for various durations of mixing time and distances.LECTURE COURSE: NMR SPECTROSCOPY transfer the much more favorable proton polarization onto the carbon nuclei. Left: Pulse sequence for hetero CP.1 Nowadays Hartmann-Hahn Cross Polarization (CP) is used.

LECTURE COURSE: NMR SPECTROSCOPY ion: HIS ωr S= 0 ωr ( 1/2ωr 1/2ωr )n S 0 HIS For heteronuclear dipolar recoupling rotational echo double resonance (REDOR) has been used.15N dipolar couplings. b) Relative signal intensity change against mixing time for a one-bond dipolar coupling (from ref.4 0.2 0 0 1 2 3 4 5 6 dephasing period (ms) Fig.: a) REDOR pulse sequence for recording 13C.13C dipolar couplings are re-introduced during the mixing time leading to dephasing of the signal by the dipolar coupling.6 -----S0 0. Herein.) Eleventh Chapter: Solid-State NMR spectroscopy Pg. Williamson et al.138 . Note that during signal acquisition the dipolar couplings are removed by MAS so that narrow signals are sampled: a) 1H 13C π/2 CP CP decoupling 15N 0 1 2 3 4 5 6 7 8 t/τr b) 1 0.8 ∆S 0. 15N.

it is complicated by the fact that the spin-interactions need to be reintroduced selectively. Note that strictly speaking the RF pulses are applied to the spin-part of the dipolar Hamiltonian (IzSz) whereas MAS only influences the spatial part (3cos2θ-1).6 0. The curves reflecting signal intensity versus time depend on the magnitude of the heteronuclear dipolar couplings. For example. which in turn depend on their distance. Note the change in signal amplitude of the signal at 53 ppm after the resonance at 20 ppm has been selectively inverted. a reference spectrum without the rotor-synchronized 15N pulses is additionally acquired and the intensities in both spectra are compared. Homonuclear recoupling techniques have also been developed. b) 1D spectra taken at various setting of the mixing time τm.0 <I1z-I2z> 5ms 0ms 0 10 τm (ms) 20 30 70 60 50 40 δ (ppm) 30 20 10 Fig. Selectivity in the homonuclear recoupling techniques is achieved by adjusting a chosen property such as the spinning (rotor) frequency to the zero. in rotational resonance (R2) the rotor frequency is set to a submultiple of the chemical shift difference.4 0.139 .: a) Pulse sequence for a rotational resonance experiment.LECTURE COURSE: NMR SPECTROSCOPY Usually. The dipolar coupling is then measured in form of an exchange experiment: A resonance A is selectively inverted and the exchange between the two sites is monitored: a) π/2 ωr = 3411Hz b) CP π/2 Decoupling π/2 25ms 20ms CP Cross DANTE Polarization Inversion τm 15ms c) 1. and precise values for these can be extracted from the data by comparison of the experimental data with simulations.or double-quantum frequencies of the spin pair of interest (ωzq= ωaωb. mixing time.0 10ms 0. ωdq=ωa plus ωb).2 0. Eleventh Chapter: Solid-State NMR spectroscopy Pg. Whereas its implementation is similar to the heteronuclear variants in principle. (A transformation IzSz --> Iz(-Sz) is easily accomplished for a heteronuclear pair of spin by just applying a 180° pulse to the S spin but usually difficult for homonuclear spin pairs which will both be flipped unless the 180° pulse is selective).8 0. c) Change in intensity vs.

1. J-couplings are much smaller and transfer times are much longer.).1H couplings in the so-called PISEMA spectra: Eleventh Chapter: Solid-State NMR spectroscopy Pg. crystalline materials or peptides/proteins embedded in phospholipid membranes. e. DREAM. In addition. Other techniques use double quantum transitions (HORROR. Opella et al.6 SS-NMR of oriented samples: SS-NMR spectra are complicated by the fact that all kind of orientations with respect to the external field are possible. DRAMA etc. methods relying on scalar couplings are rather new and their use has been motivated by the fact that they allow to trace along covalent networks (spin systems) leaving less ambiguity in the assignment process. however. all other interactions need to be sufficiently eliminated. can be oriented either by deposition on glass plates or by magnetic alignment.140 . It has recently become clear that the orientation of helices with respect to the membrane normal may be probed from a combination of chemical shift and the one-bond dipolar 15N. Assuming a unique association with the membrane the nuclei therefore do not adopt all possible orientations with respect to the external field. and largely utilize rotor-synchronized RF pulses.LECTURE COURSE: NMR SPECTROSCOPY The condition for rotational resonance is fulfilled only for one (or at least a very few) spin pairs. magnetically-oriented lipid bicelles (A). This effect is demonstrated in the figure displayed on the left: The spectra were recorded on 15N fd coat protein on unoriented lipid bilayers (C). Some classes of molecules.g. and lipid bilayers oriented on glass plates (B) (taken from ref. Therefore.).

the orientation of axes in the PAS are depicted. In addition. σ O Βο 22 C Cα−1 σ Cα Ν θ=17 ο H 11 σ33 220 140 σ{15Ν} The figure above displays the chemical shift of a 15N amide resonance in dependence of the orientation of the helix.141 . A) displays peak position for various angles the helix makes with Eleventh Chapter: Solid-State NMR spectroscopy Pg. and the exact position and pattern can be rather easily related to the angle the helix makes with the membrane surface (and hence with the field): A B β C In the figure above.LECTURE COURSE: NMR SPECTROSCOPY . Peaks belonging to amide moieties from a single helix in PISEMA spectra occur at characteristic places.

Marassi.H. O.F. 1. Annu. Meth. H. 339.142 . microcystalline solids are usually required and much attention needs to be paid to sample preparation.T. Williamson. Zerbe. A. Chem. in which NMR active isotopes (13C. C. Meier: MAS Solid-State NMR of Isotropically Enriched Biological Samples in BioNMR in Drug Research. Tycko. Another common problem is that signals are inherently broadened due to the structural disordered in non-crystalline solids. M. Chem. B. R. (2001). In C) typical PISEMA spectra are displayed for the AchR M2 peptide (right) together with the HSQC spectrum recorded in solution on the DPC-micellebound form. Phys.J. Bitter. F.7 Labeling strategies for solid-state NMR applications: The easiest (and most often used) remedy to reduce the vast number of interactions in the solid state is the use of selectively labeled material. Assigning polypeptides from uniformly labeled material still presents a major challenge. Whereas selectively labeled small molecules usually need to be synthesized from suitable precursors. biosynthetic routes to prepare alternatingly labeled peptides (only every second position is labeled) or selectively at methyl position have been developed. Wiley 2003.-M. Ed. Biomolecular Solid State NMR: Advances in Structural Methodology and Applications to Peptide and Protein Fibrils. Angew. Hence. Nuclear Magnetic Resonance of MembraneAssociated Peptides and Proteins.15N) are only introduced at specific sites.LECTURE COURSE: NMR SPECTROSCOPY the membrane-normal.M. Enzymol. Opella. (2001).D. 41. For that purpose a series of triple-resonance experiments relying on transfer pathways similar to those used for solution studies have been suggested. peptides can be subsequently labeled at cysteine sites with methyliodide. Alternatively. References: • P. Jerschow. S. D. Solid-State Spectroscopic Methods in Chemistry. 52. Ernst. 285-313. Ma. In B) experimental peak positions are assigned to the helical wheel positions for 15N labeled AchR M2 peptide (a channel-forming peptide) in oriented bilayers and compared to a simulated PISEMA spectrum calculated for a tilt angle of 12°. 575-606. 3096-3129. • • • Eleventh Chapter: Solid-State NMR spectroscopy Pg. Laws. Rev. (2002).

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