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Samantha Baillie Infection and Immunity BSc References (1) Cystic Fibrosis Foundation. Survival is improving.

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Samantha Baillie Infection and Immunity BSc (8) Cystic Fibrosis trust. About CF. Cystic Fibrosis webpage, 2009, [Accessed 25.11.2009] Available at http://www.cftrust.org.uk/aboutcf/whatiscf (9) Kerem, B. Identification of the cystic fibrosis gene: genetic analysis. Science, Vol 245, Issue 4922, pp 1073-1080 (10) Kiska, D L. Accuracy of four commercial systems for identification of Burkholderia cepacia and other gram-negative nonfermenting bacilli recovered from patients with cystic fibrosis. Journal of Clinical Microbiology, 1996, Vol 34, Issue 4, pp 886-91 (11) Vanlaere, E. et al. Matrix-assisted laser desorption ionisation-time-of offlight mass spectrometry of intact cells allows rapid identification of Burkholderia cepacia complex. Journal of Microbiological Methods, 2008, Vol 75, Issue 2, pp 279-86 (12) Salunkhe, P. et al. A cystic fibrosis epidemic strain of Pseudomonas aeruginosa displays enhanced virulence and antimicrobial resistance. Journal of bacteriology, 2005, Vol 187, Issue14, pp 4908-20 (13) Emerson, J., Rosenfeld, M., McNamara, S., Ramsey, B., Gibson, R.L. Pseudomonas aeruginosa and other predictors of mortality and morbidity in young children with cystic fibrosis. Pediatric Pulmonology, Vol 34, Issue 2, pp 91 – 100 (14) Brisse, S., Stefani, S., Verhoef, J., Van Belkum, A.,Vandamme, P., Goessens, W. Comparative evaluation of the BD Phoenix and VITEK 2 automated instruments for identification of isolates of the Burkholderia cepacia complex. Journal of Clinical Microbiology, 2002, Vol 40, Issue 5, pp 1743-8 (15) Lipuma, J. et al. Update on the Burkholderia cepacia complex". Current Opinion on Pulmonary Medicine, 2005, Vol 11, Issue 6, pp 528–33

Samantha Baillie Infection and Immunity BSc (16) Costerton, J.W., Stewart, P.S., Greenberg, E.P. Bacterial Biofilms: A Common Cause of Persistent Infections. Science, 1999, Vol 284, Issue 5418, pp1318-1322. (17) Hoyle, B.D., Costerton, J.W., Bacterial resistance to antibiotics: the role of biofilms, Progress in drug research. 1991, Vol 37, Issue 91, p 105 (18) Mah, T. et al. A genetic basis for Pseudomonas aeruginosa biofilm antibiotic resisance. Nature, 2003, Vol 426, pp 306-310 (19) Drake, S,. Stevenson, L.G., Patel, N., Murray, P.R. MALDI-TOF Mass Spectrometry Based Identification of Clinically Important Microorganisms. American Society for Mass Spectrometry, 2009, Philadelphia. (20) Seng, P. et al. Ongoing revolution in Bacteriology: Routine identification of bacteria by MALDI-TOF Mass Spectrometry. Clinical Infectious Diseases, 2009, Vol 49, Issue 4, pp543-51 (21) Bosshard, P.P et al.16S rRNA gene sequencing versus the API 20 NE system and the VITEK 2 ID-GNB card for identification of nonfermenting Gram-negative bacteria in the clinical laboratory. Journal of Clinical Microbiology, 2006, Vol 44, Issue 4, pp 1359-66 (22) Kiska, D.L et al. Accuracy of four commercial systems for identification of Burkholderia cepacia and other gram-negative nonfermenting bacilli recovered from patients with cystic fibrosis. Journal of Clinical Microbiology, 1996, Vol. 34, Issue 4, pp 886-891. (23) Von Wintzingerode, F. et al. Base-specific fragmentation of amplified 16S rRNA genes analyzed by mass spectrometry: a tool for rapid bacterial identification. Proceedings of the National Academy of Sciences of the United States of America, 2002, Vol 99, Issue 10, pp 7039-44

Samantha Baillie Infection and Immunity BSc (24) Imperi, F. et al. Analysis of the periplasmic proteome of Pseudomonas aeruginosa, a metabolically versatile opportunistic pathogen. Proteomics, 2009, Vol 9, issue 7 pp 1901-15 (25) Arevalo-Ferro, C. et al. Proteome analysis of intraclonal diversity of two Pseudomonas aeruginosa TB clone isolates. Proteomics, 2004. Vol 4, Issue 5, pp 1241-6 (26) Wunschel, S, C. et al. Bacterial analysis by MALDI-TOF mass spectrometry: an inter-laboratory comparison. Journal of the American Society for Mass Spectrometry, 2005, Vol 16, Issue 4, pp 456-62 (27) Donohue, M. J., Smallwood, A. W., Pfaller, S., Rodgers, M., Shoemaker, J. A. The development of a matrix-assisted laser desorption/ionization mass spectrometry-based method for the protein fingerprinting and identification of Aeromonas species using whole cells. Journal of Microbiological Methods, 2006, Vol 65, Issue 3, pp 380-9 (28) Valentine, N., Wunschel, S., Wunschel, D., Petersen, C., Wahl, K. Effect of Culture Conditions on Microorganism Identification by Matrix-Assisted Laser Desorption Ionization Mass Spectrometry. Applied and Environmental Microbiology, 2005, Vol.71, Issue 1, pp 58-64 (29) Arevalo-Ferro, C. et al. Identification of quorum-sensing regulated proteins in the opportunistic pathogen Pseudomonas aeruginosa by proteomics. Environmental Microbiology, 2003, Vol 5, Issue 12, pp 1350-69