You are on page 1of 11

BMC Evolutionary Biology BioMed Central

BMC
2002,Evolutionary Biology
2 x
Research article
The diversity of microorganisms associated with Acromyrmex
leafcutter ants
Steven Van Borm*1, Johan Billen1 and Jacobus J Boomsma2

Address: 1Zoological Institute, Laboratory of Entomology, Catholic University of Leuven, Naamsestraat 59, B-3000 Leuven, Belgium and
2Zoological Institute, Department of Population Ecology, University of Copenhagen, Universitetsparken 15, 2100 Copenhagen, Denmark

E-mail: Steven Van Borm* - steven.vanborm@bio.kuleuven.ac.be; Johan Billen - johan.billen@bio.kuleuven.ac.be;


Jacobus J Boomsma - JJBoomsma@zi.ku.dk
*Corresponding author

Published: 3 May 2002 Received: 28 March 2002


Accepted: 3 May 2002
BMC Evolutionary Biology 2002, 2:9
This article is available from: http://www.biomedcentral.com/1471-2148/2/9
© 2002 Van Borm et al; licensee BioMed Central Ltd. Verbatim copying and redistribution of this article are permitted in any medium for any purpose,
provided this notice is preserved along with the article's original URL.

Abstract
Background: Molecular biological techniques are dramatically changing our view of microbial
diversity in almost any environment that has so far been investigated. This study presents a
systematic survey of the microbial diversity associated with a population of Acromyrmex leafcutter
ants. In contrast to previous studies on social insects, which targeted specific groups of symbionts
occurring in the gut (termites, Tetraponera ants) or in specialised cells (Camponotus ants) the
objective of our present study was to do a total screening of all possible micro-organisms that can
be found inside the bodies of these leafcutter ants.
Results: We amplified, cloned and sequenced SSU rRNA encoding gene fragments from 9
microbial groups known to have insect-associated representatives, and show that: (1)
representatives of 5 out of 9 tested groups are present, (2) mostly several strains per group are
present, adding up to a total of 33 different taxa. We present the microbial taxa associated with
Acromymex ants in a phylogenetic context (using sequences from GenBank) to assess and illustrate
to which known microorganisms they are closely related. The observed microbial diversity is
discussed in the light of present knowledge on the evolutionary history of Acromyrmex leafcutter
ants and their known mutualistic and parasitic symbionts.
Conclusions: The major merits of the screening approach documented here is its high sensitivity
and specificity, which allowed us to identify several microorganisms that are promising candidates
for further study of their interactions with Acromyrmex leafcutter ants or their gardens.

Background ular, the use of small subunit ribosomal RNA (SSU rRNA)
Recent trends in microbial ecology reveal that in most ter- encoding sequences has dramatically increased the under-
restrial and aquatic ecosystems biodiversity is in large part standing of microbial diversity in a variety of environ-
microbial. Since the pioneering work of Carl Woese [1] ments, ranging from plankton communities [5], sewage
and Rudolf Amann [2,3], the unraveling of microbial di- plants [6] to geothermal springs [7] and symbiotic associ-
versity and taxonomy no longer depends on conventional ations with a diversity of hosts (e.g. [8]). When symbionts,
culture-dependent bacteriological methods [4]. In partic- microbes can either be parasites (i.e. be detrimental for

Page 1 of 11
(page number not for citation purposes)
BMC Evolutionary Biology 2002, 2 http://www.biomedcentral.com/1471-2148/2/9

the survival and reproduction of the host; [9]), or mutual- [25,26], diverse honey bee parasites [27–30], and endo-
ists (i.e. be beneficial to the host; [10]). A clear phyloge- symbiotic Wolbachia in ants [17,22,31][32][18]. However,
netic identification of hosts and symbionts is essential to the only social insects where a larger spectrum of taxo-
address detailed questions about interactions, transmis- nomically heterogeneous microbial diversity has been
sion and coevolution when hosts and symbionts are systematically surveyed with molecular tools are termites,
known (e.g. [11]). However, the same molecular tools are whose gut communities are now known to harbour a
also important to identify novel and hitherto unexpected complex and diverse community with numerous repre-
associations with parasites or mutualists (e.g. [12–14]). sentatives of several microbial groups [33–38].
The present study is of the latter type and focuses on a so-
cial insect that is known to have at least two microbial The present study aims to document the total diversity of
mutualists and one microbial parasite [15–18]. microorganisms that can be found within the bodies of
workers of the leaf-cutter ant Acromyrmex octospinosus. To
Both mutualistic and parasitic microbial associates of so- do this, we have amplified, cloned and sequenced SSU
cial insect hosts face spatially and genetically structured rRNA encoding sequences representing eight microbial
host populations against which their genotypes are tested groups known to have insect-associated representatives,
by natural selection. In fact, the distribution of genetic di- and one negative control group (Fibrobacter) known to
versity across and within colonies is likely to determine in contain only vertebrate associated ruminal bacteria [39].
large part the efficiency of horizontal transmission of
strains between individual hosts [19–21]. In addition, Results
maternally (vertically) transmitted symbionts may at- Group-specific PCR amplification
tempt to force their hosts to produce a female biased sex No group specific template could be amplified from the
ratio, thereby enhancing their representation in the next pooled sample in four out of nine tested microbial
generation [17,22]. Although these vertically transmitted groups, including the negative control group Fibrobacter
symbionts may thus affect the expression and regulation (Table 1). For these taxa either no representatives are
of reproductive conflict in insect societies, rather little ef- present, or our methods failed to amplify them. The latter
fort has been undertaken to estimate the total diversity of possibility, however, seems unlikely, since the goup-spe-
microbial associates of social insects. The studies available cific primer pairs were designed using all known repre-
today suggest that surveys of this kind are rewarding, be- sentatives in GenBank of the respective groups, and were
cause a number of interesting specific associations be- tested using several positive controls aimed to represent
tween social insects and microbial symbionts have the whole diversity of the group in question [40]. For the
recently been discovered and analysed for their co-evolu- other five taxa the group specific PCR results indicated
tionary interactions with molecular tools. Examples in- that at least one representative from each of these groups
clude Camponotus wood ant γ-proteobacterial mutualists is associated with Acromyrmex octospinosus (Table 1).
[12,13,23,24], Solenopsis fire ant microsporidian parasites

Table 1: Results of the group specific PCR reactions and characterization of the diversity of symbiont strains in each of the microbial
taxa

Group (Kingdom) Group specific PCR N clones sequenced N symbiont strains


present

Microsporidia (EUK) -
Parabasalidea & Diplomonadida (EUK) -
Eumycota – Fungi (EUK) + 41 6
Flavobacteria (EUB) + 44 5
Fibrobacter (EUB) -
Spirochaetes & relatives (EUB) -
Proteobacteria (EUB) + 36 12
Gram pos high GC (EUB) + 26 9
Gram pos low GC (EUB) + 12 1
TOTAL 159 33

Page 2 of 11
(page number not for citation purposes)
BMC Evolutionary Biology 2002, 2 http://www.biomedcentral.com/1471-2148/2/9

Cordyceps ophioglossoides (AB027321)


Cordyceps jezoensis (AB027319)
Cordyceps inegoensis (AB027322)
Cordyceps japonica (AB027320)
Cordycepioedeus bisporus (AF009652)
Paecilomyces tenuipes (AB027334.1)
59 Cordyceps prolifica (AB027324)
Coryceps capitata (AB027318)
Claviceps purpurea (AF281178)
Hypomyces chrysospermus (AB027339)
Beauveria brongniartii (AB027335)
51 A. octospinosusCordyceps-like symbiont (AF491906 ASCO-
99
72 Cordyceps kanzashiana (AB027325) MYCOTA
Cordyceps sobolifera (AB027328)
Camponotus sp. Cordyceps-like symbiont (AF491907)
78
59 Leptosphaerulina chartarum (U79486)
62 Pleospora rudis (U00957)
Pseudotrichia aurata (AF164374)
100 Didymella exigua (AF164355)
100
62
Phoma herbarum (AF218792)

A. octospinosusDidymella-like symbiont (AF491908)


57 Didymella bryoniae (U79488)
A. octospinosusFonsecaea-like symbiont AF491909)
Fonsecaea pedrosoi (L36997)
100

69
Phialophora verrucosa (L36999)
Graphium calcioides (AB007655)
Ramichloridium anceps (U20380)
93 Sistotrema musicola (AF334936)
63 Pulcherricium caeruleum (AF334933)
58
Rhizoctonia solani (D85637)
A. octospinosus fungal symbiont (AF491910
Calvatia gigantea (AF026622)
Entoloma strictius (AF287832)
Termitomyces sp. (AB051893)
99 Apterostigma collare symbiont (U09535)
Cyphomyrmex rimosa symbiont (U09536)
100 Trachymyrmex bugnioni symbiont (U09537) BASIDIO-
72 Sericomyrmex bondari symbiont (U09539) MYCOTA
Atta cephalotes symbiont (U09538)
95
Atta sexdens symbiont (AF076384)
70 Atta laevigata symbiont (AF076383)
A. octospinosusgarden symbiont (AF49191
Acromyrmex hispidus symbiont 2 (AF076381)
Acromyrmex hispidus symbiont 1 (AF076380)
Atta capiguara symbiont (AF076385)
54 Acromyrmex crassispinus symbiont (AF076382)

0.02

Figure 1
Neighbour joining tree for fungal strains based on partial sequences of the 18S rRNA gene Distances were calcu-
lated using the Kimura 2-parameter in MEGA 2.0. The tree was rooted using the Basidiomycota as an outgroup for their sister
group Ascomycota and vice versa. Bootstrap support values (1000 replicates) over 50% are shown above the branches. Names
of strains are followed by their GenBank accession number. Sequences generated in this study are indicated on black back-
ground.

Page 3 of 11
(page number not for citation purposes)
BMC Evolutionary Biology 2002, 2 http://www.biomedcentral.com/1471-2148/2/9

61 A. octospinosus Wolbachia -like symbiont 1 (AF491885)


81
A. octospinosus Wolbachi-like symbiont 2 (AF491886
91
A. octospinosus Wolbachi-like symbiont 3 (AF491887
93 A. octospinosus Wolbachi-like symbiont 4 (AF491888
Wolbachia pipientis (AF179630)
100
90 Incompatibility symbiont of Nasonia (M84691)
96 Wolbachia
100 . sp. Abl (AY007548)
A. octospinosus Wolbachia -like symbiont 5 (AF491889
82
Ehrlichia sp. (AF318023)
97
Rickettsia sp. (‘AF141908)
100 Orientia tsutsugamushi (AF062074)
Endosymbiont of Acanthamoeba sp. (AF132139) Alpha
86
92
Holospora obtusa (X58198)
Hyphomonas sp. (AF194400)
Rhodospirillum rubrum (D30778)
54
Sphingomonas sp. (AF324199)
87 Caulobacter sp. (AJ227766)
100
67 A. octospinosus Caulobacter -like symbiont (AF491890)
Mycoplana bullata (D12785)
Bradyrhizobium sp. (AF387321)
67
A. octospinosusRhizobiaceal symbiont (AF49189
99
Agrobacterium tumefasciens (AF388033)
64 93
Rhizobium sp. (AF054931)
71 Ochrobactrum sp. (AF028733)
Bartonella vinsonii (U26258)
100
Wolbachia melophagi (X89110)
64 Rubrivivax gelatinosus (AF016167)
64
Rhodocyclus sp. (AJ224937)
Bordetella holmesii (AJ239044)
Spirillum volutans (M34131)
Beta
57
Neisseria sp. (AY005029)
100 Gallionella ferruginea (L07897)
Methylophilus leisingerii (AF250333)
Nitrosomonas sp. (AY036898)
100 Wolbachia persica (M21292)
92
Francisella tularensis (AF227314)
75 Halomonas cupida (AY035894)
79
87
88 Pseudomonas sp. (AY040872)
Methylomonas scandinavica (AJ131369)
65 Buchnera aphidicola (AJ296759)
94
Vibrio campbelli (AY035896)
Aeromonas sp. (AJ291837)
97
Yersinia pseudotuberculosis (AF365950)
Gamma
66

99
Erwinia amylovora (AF141896)
97
E. coli (AEOO5555)
100
A. octospinosus E.coli -like symbiont 1 (AF491892)
99
A. octospinosus E.col-like symbiont 2 (AF491893
A. octospinosus E.col-like symbiont 3 (AF491894
72 A. octospinosus E.coli -like symbiont4 (AF491895
85 A. octospinosus E.col-like symbiont 5 (AF491896
Desulfovibrio sp. (AJ251631)
52 Desulfobacter vibrioforme (U12254) Delta
Desulfuromonas ottawaensis (AF357915)
64 Bdellovibrio sp. (AF385539)
Helicobacter winghamensis (AF246984) Epsilon
100
Campylobacter sp. (AY005038)
Fibrobacter sp. (L35548)

0.05

Figure 2
Neighbour joining tree for proteobacterial strains based on partial sequences of the 16S rRNA gene The tree
was rooted using Fibrobacter sp. (EMBL L35548) as an outgroup sequence. See legend of Fig. 1 for further details.

Page 4 of 11
(page number not for citation purposes)
BMC Evolutionary Biology 2002, 2 http://www.biomedcentral.com/1471-2148/2/9

70 Pseudonocardiaceae (X87314.1)
85 A. octospinosussymbiont 1 (AF49197)
64 Soil bacterium LM 157 (AJ252833.1)
Pseudonocardia compacta (AJ252825.1) PSEUDO-
73
NOCARDINAE
99 Amycolata autotrophica (X54288.1)
90
A. octospinosussymbiont 2 (AF491898
99
Pseudonocardia alni (AJ252823.1)
91
A. octospinosussymbiont 3 (AF491899
84 A. octospinosussymbiont 4(AF491900)
Mycobacterium neoaurum (AF268445.1)
CORYNE-
100 Mycobacterium sp. (AB028482.1) BACTERINAE
100 Mycobacterium sp. (U90887.1)
82 Aeromicrobium erythreum (AF005021.1)
65
80 Aeromicrobium fastidiosum (AF005022.1)
100
Nocardioides sp. (X76179.1)
A. octospinosussymbiont 5 AF491901)
89 Luteococcus sp. (AJ132334.2) PROPIONI-
93 BACTERINAE
Propioniferax innocua (AF227165.1)
98 A. octospinosussymbiont 6 (AF491902
82
A. octospinosussymbiont 7 (AF491903
56
58 M. phosphovorus (D26170.1)
Unidentified bacterium sp. (AF281118.1)
100
Cellulomonas sp. (Y09659.1)
Rothia-like sp. (AJ131121.1)
Leifsonia poae (AF116342.1)
100 Oerskovia turbata (X79454.1)
P. enterophila (X83807.1)
Cellulomonas sp. (AJ298927.1)
75
99 C. fermentans (X83805.1)
Sanguibacter inulinus (X79452.1) MICRO-
72 97 Nostocoida limicola (X85212.1) COCCINAE
93 Nostocoida limicola (Y14597.1)
99
Tetrasphaera australiensis (AF125097.1)
89
A. octospinosussymbiont 8 (AF491904
Ornithinicoccus hortensis (Y17869.1)
78 M. roseus (X87756.1)
56 80
Dermatophilus congolensis (AJ243918.1)
Dermabacter sp. (AF287753.1)
M. sedentarius (X87755.1)
90 Demetria terragena (Y14152.1)
99 A. octospinosussymbiont 9 (AF491905
Streptomycoides glaucoflavus (AB006155.1)
STREPTO-
Streptomyces sp. (AF101415.1) MYCETINAE
100 Streptomyces sacchari (AF306660.2)
Fusobacterium equorum (AJ295750.1)

0.05

Figure 3
Neighbour joining tree for Gram positive bacteria with high G+C content based on partial sequences of the
16S rRNA gene The tree was rooted using Fusobacterium equorum (EMBL AJ295750) as an outgroup sequence. See legend of
Fig. 1 for further details.

Page 5 of 11
(page number not for citation purposes)
BMC Evolutionary Biology 2002, 2 http://www.biomedcentral.com/1471-2148/2/9

99 Mycoplasma cottewii (U67945)

97 Mycoplasma yeatsii (U67946.1)


Mycoplasma capricolum (U26047)
56 ENTOMO-
100 Mycoplasma mycoides (U26050)
PLASMA-
68 Mesoplasma entomophilum (AF305693) TACEAE
100 Mesoplasma florum (AF300327)
90
Entomoplasma freundtii (AF036954.1) ENTOMO-
A. octospinosussymbiont (AF491879) PLASMA-
96 TALES
100 Mesoplasma lactucae (AF303132.1)
81 Spiroplasma apis (M23937)
SPIRO-
100 Spiroplasma clarkii (M24474) PLASMA-
82
Spiroplasma citri (M23942) TACEAE

Spiroplasma-symbiont of Antonina crawii (AB030022)


100
76 Mycoplasma hominis (M24473)
100 Mycoplasma meleagridis (L24106)
MYCO-
Mycoplasma mobile (M24480) PLASMA-
79 Ureaplasma urealyticum (AF073459) TALES

100 Mycoplasma pneumoniae (M29061)


98 Mycoplasma gallisepticum (M22441)
Clostridium ramosum (X73440)
Bacillus subtilis (AB065370)

0.02

Figure 4
Neighbour joining tree for Gram positive bacteria with low G+C content based on partial sequences of the 16S
rRNA gene The tree was rooted using Bacillus subtilis (EMBL AB065370). See legend of Fig. 1 for further details.

Acromyrmex octospinosus microbial associates in a phylo- bacterial genus Wolbachia. Two other α-Proteobacteria
genetic context were present, one closely related to the freshwater bacteri-
Cloning and sequencing of these amplification products um Caulobacter sp., the other falling within the family
revealed that the Gram positive bacteria with low GC con- Rhizobiaceae. A last group of 5 sequences is closely related
tent were represented by a single sequence but that a het- to the γ-proteobacterial pathogen Escherichia coli.
erogeneous template was amplified in the other group
specific PCR's (Table 1). Differences smaller than 1% se- A total of nine strains of Gram-positive bacteria with high
quence divergence were assumed to be due to Taq G+C content (Fig 3) was identified, all belonging to the
polymerase reading errors and a consensus sequence was Actinomycetales: superfamilies Pseudonocardinae (4
calculated for these groups of similar sequences. This pro- strains), Propionibacterina (3 strains), and Micrococcinae
cedure generated a total of 33 different bacterial strains as- (2 strains). The single sequence belonging to the Gram-
sociated with A. octospinosus (Table 1). positive bacteria with low G+C content clustered within
the insect pathogenic family Entomoplasmataceae (Fig 4)
One of the six identified fungal clones (Fig 1) clustered and five flavobacterial strains clustered together with var-
within a monophyletic group of Basidiomycota including ious representatives of the Flexibacter and Flavobacterium
all known garden symbionts of fungus growing ants. This group, none of which are known associates of insects.
sequence was retrieved 15 times in a total of 41 sequenced
clones. A second basidiomycotal sequence clustered with Discussion
the plant pathogen Rhizoctonia solani but is only distantly It is difficult to predict the fitness effects of an associated
related to it. Among the Ascomycota associated with A. microorganism (i.e. wheter it is a mutualist, a parasite, or
octospinosus, we found a Cordyceps sp., a relative of the just a commensal or ingested food item) from its phyloge-
plant pathogen Didymella, and a more distant relative of netic affiliation. Closely related microorganisms often re-
the human pathogen Fonsecaea. side in a totally different ecological niche (eg. Bartonella
pathogenic proteobacteria are closely related to root nod-
A total of 12 strains belonged to the Proteobacteria (Fig ulating Rhizobiaceae, [41]. Only in some cases, where a
2). Among these, 5 strains clustered within the α-proteo- complete monophyletic group of microorganisms has a

Page 6 of 11
(page number not for citation purposes)
BMC Evolutionary Biology 2002, 2 http://www.biomedcentral.com/1471-2148/2/9

76 Flavobacterial symbiont 1 ofA. octospinosus(AF491880)


94 Flavobacterial symbiont 2 ofA. octospinosus(AF491881)

57 Uncultured bacterium clone Ebpr3 (A F255636)


Flexibacter sp. CF 1 (AF361187)

100
Uncultured bacterium FukuN21 (AJ289993)
48
69 Bacterium isolate AH47 (AJ289963)

98 Flavobacterial symbiont 3 ofA. octospinosus(AF491882)


Flavobacterial symbiont 4 oA. octospinosus(AF491883
62
88 Flavobacterium ferrugineum (M62798)

87
Rhizosphere soil bacterium isolate RSI -24 (AJ252591)
24
60 Uncultured bacterium PHOS -HE31 (AF314430)
Agricultural soil bacterium clone SC -I-91 (AJ252666)
14
Flavobacterial symbiont 5 oA. octospinosus(AF491884
68 Flexibacter cf. sancti (AF181568)
71 Chitinophaga pinensis (AF078775)
100
Uncultured rape rhizosphere bacterium wr0086 (AJ295528)
84
Flavobacterium-like sp. oral clone AZ105 (AF385548)
55 Saprospira sp. SS95-4 (AB058902)
Blattabacterium relictus (AF363715)
70
97 Capnocytophaga sp. oral clone BU084 (AF385569)
Prevotella bryantii (AF396925)
99
95 Bacteroides distasonis (M86695)
77 Bacteroides fragilis (AB050106)
Thermonema rossianum (Y08958)
Rhodothermus marinus strain NR-32 (AF217499)
Nitrospira sp. clone b37 (AJ224046)

0.05

Figure 5
Neighbour joining tree for flavobacterial strains based on partial sequences of the 16S rRNA gene The tree was
rooted using Nitrospira sp. (EMBL AJ224046) as an outgroup sequence. See legend of Fig. 1 for further details.

similar life style, reasonable predictions can be made ety of insects [47] and can have severe mortality and
about the fitness effects of additional microbes clustering morbidity consequences for ant hosts [48,49]. A small
within such groups. Possible examples in this study in- subset of Cordyceps species jumped to truffles hosts instead
clude: (1) A subset of five proteobacterial strains clearly of insects [47], but all known Cordyceps species are viru-
clustering within the Wolbachia group of reproductive par- lent and mostly obligatory pathogens. Since all Cordyceps
asites of arthropods (Fig 2). Wolbachia is a maternally have an obligatory and potentially virulent parasitic life
transmitted bacterium that manipulates the reproduction history, the most parsimonous assumpion is that new
of its arthropod host [42–44]. These bacteria often force fungi clustering within this group are also parasitic. Sec-
their hosts to produce broods of mostly female offspring, ondary loss of a parasitic life might have occurred but
the sex that maximises Wolbachia transmission due to its would require numerous adaptations, since the biology of
exclusively maternal inheritance. Wolbachia infections are these microorganisms is evolutionary tuned to be parasit-
present in more than half of the ant species studied so far, ic. We also sequenced an 18S rRNA gene fragment of a
but are unusually diverse in the leafcutter ants Cordyceps fruiting body from a Camponotus atriceps worker
[17,18,22,45,46]. (2) A second case where the phylogeny that was found in the same sampling site (Fig 1). Al-
is informative concerns the fungal strain that clusters though horizontal transmission of Cordyceps has been
within a group of Cordyceps and Beauveria entomopatho- documented before [47], we did not find any evidence for
gens (Fig. 1). Cordyceps species are known to infect a vari- horizontal transmission. The Cordyceps originating from

Page 7 of 11
(page number not for citation purposes)
BMC Evolutionary Biology 2002, 2 http://www.biomedcentral.com/1471-2148/2/9

Camponotus was not more closely to the one found in A. to it. (3) Several of the nine Actinomycetal associates of A.
octospinosus than those from hosts in other environments, octospinosus are related to soil bacteria. These may be nui-
indicating that there is no link between proximity and re- sances removed from the nest and carried by the ants in
latedness of infecting strains. (3) The single Gram positive their infrabuccal pocket. As no phylogenetically conserved
bacterium with high GC content we found in A. octospino- lifestyles seem to exist in this group of bacteria, however,
sus, clusters with sequences representing the genera Ento- they may equally well be genuine mutualists or pathogens
moplasma and Mesoplasma (Fig 4), both of which consist harboured by the ants. Some actinomycetes have been de-
mostly of insect associated parasites [50,51]. It is therefore scribed that reside on these ants' cuticle and produce an
also in this case very likely that the strain we found in A. antibiotic against garden pests [15,16]. None of the se-
octospinosus is also a parasite. (4) A total of 15 clones were quences we isolated in this study, however, were closely
almost identical in sequence and clustered with the Leuco- related to these cuticular symbionts (C. Currie, pers.
agaricus garden symbionts cultivated as a major food re- comm.). All other known insect-associated actinomycetes
source by other Attine ants [52,53]. This implies that (gut associates of Culex mosquitos, [57], and of termites,
fragments of the Acromyrmex octospinosus mutualistic fun- [58] belong to the Streptomycetinae, a subfamily to which
gus were present as food particles in the ant guts. As a con- none of our sequences belongs. In conclusion, from the
sequence, our PCR's are also likely to have amplified other information currently present we cannot say what effect
microorganisms that occur in the fungus garden. the isolated actinomycete strains may have on A. octos-
pinosus. (4) The relatives of the five identified Flavobacte-
For the remaining sequences isolated in this study, no SSU ria come from diverse environments and leave us no idea
rRNA sequences are currently present in Genbank that about the possible effect of the identified strains. Most of
give a clear idea about their effects in Acromyrmex octos- the related Genbank Flavobacteria were actually isolated
pinosus. They may be just neutral passengers in the gut, or from water or soil samples, so that we cannot exclude that
they may be parasites or mutualists for which the rRNA some of our sequences were contaminants from nest par-
genes of closely related symbionts have not yet been deter- ticles that were stored in the infrabuccal pockets of the
mined. These bacterial associates with unclear effect in- ants.
clude: (1) two of the fungal sequences having plant
pathogens (resp. Didymella and Rhizoctonia) among their We did not amplify any DNA sequences using primers de-
closest relatives. If the clustering of these fungi within signed to target Microsporidia, Parabasalidea and Diplo-
plant pathogenic taxa remains stable when more sequenc- monadidae, Spirochetes and Fibrobacter. Known
es become available through GenBank (which is not cer- microsporidian insect associates include Thelohania and
tain given the considerable distances to their currently Vairimorpha parasites of fire ants [26,59,60], Nosema spp.
known closest relatives), the most probable explanation parasitising numerous bee species and a variety of termite
for their occurrence inside the ants is that they are passen- associates (reviewed in [61]). Several hindgut symbionts
gers and food in the gut, originating from harvested plant of termites belong to the Parabasalidea [33] and the Spi-
material. The last fungal associate, related to the human rochetes [33]. The absence of any bacteria from the latter
skin pathogen Fonseceae pedrosoi leaves us no clue as to its Fibrobacter control group, which is known to contain only
effects on the ants. We are almost certain that this is not a ruminal bacteria [39], is an extra confirmation of the spe-
artifact, as all laboratory work was done under a laminar cificity of our primer sets [40]. The absence of any repre-
flow hood and wearing gloves and because this microor- sentative of these groups is unlikely to be a technical
ganism was not retrieved in the analysis of the Camponotus artifact since the group-specific primer pairs were de-
tissue. (2) Of the remaining proteobacteria, the distant signed using all known representatives in GenBank of the
relative of the water bacterium Caulobacter may be another respective groups and given the elaborate amplification
environmental contaminant, as this bacterium belongs to tests using several positive controls per group in Van Borm
the Rhizobiaceae, which are almost all plant symbionts and Boomsma (2002). Our analysis thus suggests that
[54]. Other Rhizobiaceae have been described as symbi- three groups known to contain insect-associated microor-
onts of the ant Tetraponera binghami[14], but only in asso- ganism are lacking or very rare (below the detection
ciation with a specialized organ for nitrogen recycling, threshold), so that they are unlikely to be important in the
which is not present in leafcutter ants. The E. coli relatives investigated population of Acromyrmex octospinosus.
(assuming a stable clustering near E. coli) are most proba-
bly mild gut parasites, as this lifestyle is typical for the ge- Conclusions
nus Escherichia[55]. A close relative, E. blattae has been The major merits of the screening approach documented
described from the gut of a cockroach [56], confirming here is its high sensitivity and specificity, which allowed
that insects can be hosts of these bacteria. Unfortunately, us to identify several microorganisms that are promising
the SSU rRNA gene of E. blattae has not been sequenced candidates for further study of their interactions with Ac-
yet, so that we cannot determine how our sequences relate romyrmex leafcutter ants or their gardens. However, a dis-

Page 8 of 11
(page number not for citation purposes)
BMC Evolutionary Biology 2002, 2 http://www.biomedcentral.com/1471-2148/2/9

advantage associated with the sensitivity of our approach Cloning


is the co-amplification of a number of microorganisms The purified PCR amplification products were subse-
that may be nothing more than food or biologically irrel- quently ligated into a pCR®2.1-TOPO vector (Invitrogen
evant gut passengers. Further research, including microor- Topo™ TA Cloning Kit). The vectors were transformed in
ganism-specific PCR screenings and in situ hybridisation chemically competent E. coli cells (Invitrogen Topo™ TA
will be needed to clarify the importance of the microor- Cloning Kit), plated on selective agar plates containing
ganisms found in this study for the functioning of the ant- ampicillin and incubated overnight at 37°C. The resulting
fungus symbiosis. clones were suspended in 50 µl double distilled water.
Positive transformants were determined by PCR, using
Materials and Methods primers M13F (5' GTA AAA CGA CGG CCA G 3') and
Sampling and DNA extraction M13R (5' CAG GAA ACA GCT ATG AC 3') provided by the
Workers of 14 colonies of Acromyrmex octospinosus were manufacturer. PCR amplification reactions were carried
collected in Gamboa, Panama in April 2000, and pre- out in 25 µl reaction mixtures containing 0.8 µM of each
served in 95% ethanol. The sampled colonies included primer, 0.2 mM of each dNTP, 1.5 mM MgCl2 , 1 µl of the
AO101, AO103, AO104 (only 3 small workers sampled), suspended clone, 0.3 U of Taq DNA polymerase (Ampli-
AO107, AO108, AO110, AO115, AO116, AO117, Taq, Perkin Elmer Cetus) and PCR buffer specified by the
AO120, AO121, AO122, AO127, and AO130 (voucher manufacturer. PCR was performed with an initial denatur-
specimens of workers from these colonies were deposited ation at 97°C for 5 min, followed by 30 cycles consisting
in the collection of the Lab. of Entomology, K.U. Leuven). of 95°C for 30 sec, 60°C for 45 sec and 72°C for 1 min,
To minimise the risk of cross-contamination, the pre-ex- and a final extension at 72°C for 10 min.
traction treatment and all DNA extraction procedures
were performed in a laminar flow hood under sterile con- Sequencing
ditions. Nine workers (3 small workers, 3 medium sized DNA was purified from the M13-PCR product (GFX™ PCR
workers, and 3 large workers) of each colony were exter- DNA and Gel Band Purification Kit, Amersham Pharma-
nally sterilised by immersion in 70% ethanol, followed by cia Biotech Inc.). The number of clones sequenced for
two rinses in double distilled water and exposure for 2 h each of the groups is given in Table 1. Sequencing reac-
to UV radiation (250 nm). The entire ants were subse- tions contained 4 pmol of each IRD (infrared-dye)-la-
quently ground after freezing in liquid nitrogen, and their belled M13 primer, 5 U of SequiTherm Excel™II DNA
DNA was extracted by 3 h incubation at 55°C and 20 min polymerase (Epicentre Technologies) and buffer pre-
boiling in 500 µl of an auto-claved 10 % Biorad Chelex scribed by the manufacturer. The PCR reaction was per-
100 resin solution. The resulting extract thus contained formed with an initial denaturation at 95°C for 5 min,
DNA from all microorganisms within the ant's body (i.e. followed by 30 cycles of 95°C for 30 sec, 55°C for 15 sec
not only parasites and symbionts, but also food and mi- and 70°C for 1 min, and a final extension at 70°C for 10
cro-organisms in the gut). To sample the total microbial min. Subsequently, reactions were transferred to a Poly-
diversity of the studied population, 5 µl of each of the 120 acrylamide gel in a LI-COR® automated sequencer.
(9 workers sampled from 13 colonies + 3 workers sam-
pled from 1 colony) individual extracts was taken and Phylogenetic analysis
joined in a pooled sample. All samples were centrifuged The partial SSU rDNA sequences of each microbial group
and stored at -20°C until use. were aligned using the CLUSTAL W program [62] fol-
lowed by manual refinements. The two closest relatives of
Group-specific amplification of SSU rDNA each sequence found in a BLAST similarity search and sev-
SSU ribosomal RNA encoding sequences were specifically eral representative species found in Genbank [63] were in-
amplified for 9 microbial groups (9) using the primer cluded in the alignments. Using the MEGA2.0 software
pairs, control templates, and conditions identified by Van [64], a neighbour-joining tree was calculated for each
Borm and Boomsma [40]. Primer information will be group from a Kimura 2-parameter based distance matrix
available on request from the authors. For each reaction, with pairwise deletion of insertions and deletions. Boot-
10 µl of the amplification product was electophorised to- strap analysis testing the reliability of the clades in the
gether with a 100 bp length standard on 1% agarose mini- phylogeny included 1000 pseudoreplications. Each tree
gels. For groups that yielded a positive result (meaning was rooted using an outgroup sequence (see figures for
that at least one representative of the group was present in details), except for the Fungi where the tree was rooted us-
our pooled sample), the group-specific band was excised ing the Basidiomycota group as a sister group of the Asco-
from the agarose gel and DNA was extracted from the gel mycota.
fragment (GFX™ PCR DNA and Gel Band Purification Kit,
Amersham Pharmacia Biotech Inc.).

Page 9 of 11
(page number not for citation purposes)
BMC Evolutionary Biology 2002, 2 http://www.biomedcentral.com/1471-2148/2/9

Authors' contributions 17. Van Borm S, Wenseleers T, Billen J, Boomsma JJ: Wolbachia in leaf-
cutter ants: a widespread symbiont that may induce male
SVB carried out the molecular laboratory work and the killing or incompatible matings. Journal of Evolutionary Biology
phylogenetic analysis, and participated in the fieldwork. 2001, 14:805-814
JB designed and coordinated the study. JJB participated in 18. Van Borm S, Wenseleers T, Billen J, Boomsma JJ: Cloning and se-
quencing of wsp encoding gene fragments reveals a diversity
the design of the sampling scheme, in the fieldwork and of co-infecting Wolbachia strains in Acromyrmex leafcutter
advised on the analysis. All authors read and approved the ants. Mol Phylogenet Evol 2002, Submitted:
final manuscript. 19. Hamilton WD: Kinship, recognition, disease and intelligence:
constraints of social evolution. In: Animal Societies: Theories & Facts
(Edited by: Ito Y, Brown JL, Kikkawa J) Tokyo: Japan Scientific Societies Press
Acknowledgements 1987, 81-102
We thank J. Longino for identifying the Camponotus atriceps and C. Currie 20. Sherman PW, Seeley TD, Reeve HK: Parasites, pathogens, and
for advise and comments. This work was supported by grant no. 981085 polyandry in social Hymenoptera. Am Nat 1988, 131:602-610
from the Institute for the Promotion of Innovation by Science and Technol- 21. Shykoff JA, Schmid-Hempel P: Parasites and the advantage of ge-
ogy in Flanders (IWT) to SVB. The research collaboration between the Uni- netic variability within social insect colonies. Proceedings of the
versities of Leuven and Copenhagen has been supported by subcontracts Royal Society of London Series B Biological Sciences 1991, 243:55-58
under the EU-TMR network "Social Evolution" and the EU-IHP network 22. Wenseleers T, Ito F, Van Borm S, Huybrechts R, Volckaert F, Billen J:
"INSECTS". Widespread occurrence of the micro-organism Wolbachia in
ants. Proceedings of the Royal Society of London Series B-Biological Scienc-
es 1998, 265:1447-52
References 23. Schröder D, Deppisch H, Obermayer M, Krohne G, Stackebrandt E,
1. Woese CR: Bacterial evolution. Microbiol Rev 1987, 51:221-271 Hölldobler B, Goebel W, Gross R: Intracellular endosymbiotic
2. Amann RI, Krumholz L, Stahl DA: Fluorescent-oligonucleotide bacteria of Camponotus species (carpenter ants) : systemat-
probing of whole cells for determinative, phylogenetic, and ics, evolution and ultrastructural characterization. Mol Micro-
environmental studies in microbiology. Journal of Bacteriology biol 1996, 21:479-489
1990, 172:762-770 24. Sameshima S, Hasegawa E, Kitade O, Minaka N, Matsumoto T: Phyl-
3. Amann RI, Ludwig W, Schleifer K-H: Phylogenetic identification ogenetic comparison of endosymbionts with their host ants
and in situ detection of individual microbial cells without cul- based on molecular evidence. Zoological Science 1999, 16:993-
tivation. Microbiol Rev 1995, 59:143-169 1000
4. Ward DM, Bateson MM, Weller R, Ruff-Roberts AL: Ribosomal 25. Moser BA, Becnel JJ, Maruniak J, Patterson RS: Analysis of the ri-
RNA analysis of microorganisms as they occur in nature. In: bosomal DNA sequences of the microsporidia Thelohania
Advances in Microbial Ecology (Edited by: Marshall KC) New York: Plenum and Vairimorpha of fire ants. J Inv Pathol 1998, 72:152-159
Press 1992, 12:219-286 26. Moser BA, Becnel JJ, DF W: Morphological and molecular char-
5. Schmidt TM, DeLong EF, Pace NR: Analysis of a marine pico- acterisation of the Thelohania solenopsae complex (Micro-
plankton community by 16S rRNA gen cloning an sequenc- sporidia: Thelohaniidae). J Inv Pathol 2000, 75:174-177
ing. Journal of Bacteriology 1991, 173:4371-4378 27. Gatehouse HS, Malone LA: The ribosomal RNA gene region of
6. Godon J-J, Zumstein E, Dabert P, Habouzit F, Moletta R: Molecular Nosema apis (Microspora): DNA sequence for small and
microbial diversity of an anaerobic digestor as determined large subunit rRNA genes and evidence of a large tandem re-
by small-subunit rDNA sequence analysis. Appl Environ Microbiol peat unit size. J Inv Pathol 1998, 71:97-105
1997, 63:2802-2813 28. Govan VA, Allsopp MH, Davison S: A PCR detection method for
7. Barns SM, Fundyga RE, Jeffries MW, Pace NR: Remarkable archae- rapid identification of Paenibacillus larvae. Appl Environ Micro-
al diversity detected in a Yellowstone National Park hot biol 1999, 65:2243-5
spring environment. Proceedings of the National Academy of Sciences 29. Govan VA, Brozel V, Allsopp MH, Davison S: A PCR detection
of the United States of America 1994, 91:1609-1613 method for rapid identification of Melissococcus pluton in
8. Amann RI, Springer N, Ludwig W, Görtz H-D, Schleifer K-H: Identi- honeybee larvae. Appl Environ Microbiol 1998, 64:1983-1985
fication in situ and phylogeny of uncultured endosymbionts. 30. Fries I, Feng F, daSilva A, Slemenda SB, Pieniazek NJ: Nosema cera-
Nature 1991, 351:161-164 nae n. sp. (Microsporidia, Nosematidae), morphological and
9. Watt C, Dobson AP, Grenfell BT: Glossary. In: Ecology of infectious molecular characterisation of a microsporidian parasite of
diseases in natural populations (Edited by: Grenfell BT, Dobson AP) Cam- the Asian honey bee Apis cerana (Hymenoptera, Apidae). Eu-
bridge: Cambridge University Press 1995, 510-521 ropean Journal of Protistology 1996, 32:256-365
10. Herre EA: Laws governing species interactions? Encourage- 31. Shoemaker DD, Ross KG, Keller L, Vargo EL, Werren JH: Wolbachia
ment and caution from figs and their associates. In: Levels of se- infections in native and introduced populations of fire ants
lection in evolution (Edited by: Keller L) Princeton, New Jersey: Princeton (Solenopsis spp.). Insect Mol Biol 2000, 9:661-673
University Press 1999, 209-237 32. Wenseleers T, Sundström L, Billen J: Deleterious Wolbachia in the
11. Clark MA, Moran NA, Baumann P, Wernegreen JJ: Cospeciation ant Formica truncorum. Proceedings of the Royal Society of London, Se-
between bacterial endosymbionts (Buchnera) and a recent ries B 2002, 296:623-629
radiation of aphids (Uroleucon) and pitfalls of testing for phy- 33. Kudo T, Ohkuma M, Moriya S, Noda S, Ohtoko K: Molecular phy-
logenetic congruence. Evolution 2000, 54:517-525 logenetic identification of the intestinal anaerobic microbial
12. Sauer C, Stackebrandt E, Gadau J, Hölldobler B, Gross R: Systemat- community in the hindgut of the termite, Reticulitermes sper-
ic relationships and cospeciation of bacterial endosymbionts atus, without cultivation. Extremophiles 1998, 2:155-161
and their carpenter ant host species: proposal of the new 34. Ohkuma M, Ohtoko K, Iida T, Tokura M, Moriya S, Usami R, Horiko-
taxon Candidatus Blochmannia gen.nov. International Journal of shi K, Kudo T: Phylogenetic identification of hypermastigotes,
Systematic and Evolutionary Microbiology 2000, 50:1877-1886 Pseudotrichonympha, Spirotrichonympha, Holomastigo-
13. Peloquin JJ, Miller SG, Klotz SA, Stouthammer R, Davis LR, Klotz JH: toides, and parabasalian symbionts in the hindgut of ter-
Bacterial endosymbionts from the genus Camponotus (Hy- mites. J Eukaryot Microbiol 2000, 47:249-259
menoptera: Formicidae). Sociobiology 2001, 38:695-708 35. Ohkuma M, Noda S, Horikoshi K, Kudo T: Phylogeny of symbiotic
14. Van Borm S, Buschinger A, Boomsma JJ, Billen J: Tetraponera ants methanogens in the gut of the termite Reticulitermes sper-
have gut-symbionts related to nitrogen-fixing symbionts. atus. FEMS Microbiol Lett 1995, 134:45-50
Submitted 2002 36. Ohkuma M, Kudo T: Phylogenetic diversity of the intestinal
15. Currie CR: A community of ants, fungi, and bacteria: a multi- bacterial community in the termite Reticulitermes speratus.
lateral approach to studying symbiosis. Annu Rev Microbiol 2001 Applied and Environmental Microbiology 1996, 62:461-468
16. Currie CR, Scott JA, Summerbell RC, Malloch D: Fungus-growing 37. Braumann A, Dore J, Eggleton P, Bignell D, Breznak JA, Kane MD:
ants use antibiotic-producing bacteria to control garden par- Molecular phylogenetic profiling of prokaryotic communi-
asites. Nature 1999, 398:701-704 ties in guts of termites with different feeding habits. FEMS
Microbiol Lett 2001, 35:27-36

Page 10 of 11
(page number not for citation purposes)
BMC Evolutionary Biology 2002, 2 http://www.biomedcentral.com/1471-2148/2/9

38. Friedrich MW, Schmitt-Wagner D, Lueders T, Brune A: Axial differ- 60. Moser BA, Becnel JJ, Maruniak J, Patterson RS: Analysis of the ri-
ences in community structure of Cremnarchaeota amnd bosomal DNA sequences of the microsporidia Thelohania
Euryarchaeota in the highly compartimentalized gut of the and Vairimorpha of fire ants. J Inv Pathol 1998, 72:154-9
soil-feeding termite Cubitermes orthognathus. Appl Environ 61. Schmid-Hempel P: Parasites in social insects. Princeton: Princeton Univer-
Microbiol 2001, 67:4880-4890 sity Press 1998
39. Montgomery L, Flesher B, Stahl D: Transfer of Bacteroides suc- 62. Thompson JD, Higgins DG, Gibson TJ: CLUSTAL W: improving
cinogenes (Hungate) to Fibrobacter gen. nov. as Fibrobacter the sensitivity of progressive multiple sequence alignment
succinogenes comb. nov. and description of Fibrobacter intes- through sequence weighting, positions-specific gap penalties
tinalis sp. nov. International Journal of Systematic Bacteriology 1988, and weight matrix choice. Nucleic Acids Res 1994, 22:6008-6013
38:430-435 63. Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Rapp BA, Wheeler
40. Van Borm S, Boomsma JJ: Group-specific PCR amplification of DA: GenBank. Nucleic Acids Res 2000, 28:15-18
SSU rRNA encoding gene fragments from 12 microbial taxa. 64. Kumar S, Tumara K, Jakobsen IB, Nei M: MEGA2: Molecular Evo-
Molecular Ecology Notes 2002 lutionary Genetics Analysis software. Bioinformatics 2002
41. Ihler GM: Bartonella bacilliformis : dangerous pathogen slowly
emerging from deep background. FEMS Microbiology Letters 1996,
144:1-11
42. Werren JH: Biology of Wolbachia. Annu Rev Entomol 1997, 42:587-
609
43. O'Neill SL, Hoffmann AA, Werren JH: Influential passengers: inherited
microorganisms and arthropod reproduction. Oxford: Oxford University
Press 1997
44. Stouthamer R, Breeuwer JA, Hurst GD: Wolbachia pipientis : mi-
crobial manipulator of arthropod reproduction. Annu Rev
Microbiol 1999, 53:71-102
45. Wenseleers T, Schoeters E, Billen J, Wehner R: Distribution and
comparative morphology of the cloacal gland in ants (Hy-
menoptera: Formicidae). Int J Insect Morphol Embryol 1998,
27:121-128
46. Jeyaprakash A, Hoy MA: Long PCR improves Wolbachia DNA
amplification: wsp sequences found in 76% of sixty-three ar-
thropod species. Insect Mol Biol 2000, 9:393-405
47. Nikoh N, Fukatsu T: Interkingdom host jumping underground:
phylogenetic analysis of entomoparasitic fungi of the genus
Cordyceps. Molecular Biology and Evolution 2000, 17:629-638
48. Evans HC, Samson RA: Cordyceps spp. and their anamorph
pathogenic on ants (Formicidae) in tropical forest ecosys-
tems. I. The Cephalotes (Myrmicinae) complex. Transactions of
the British Mycological Society 1982, 79:431-453
49. Evans HC, Samson RA: Cordyceps spp. and their anamorph
pathogenic on ants (Formicidae) in tropical forest ecosys-
tems. II. The Camponotus (Formicinae) complex. Transactions
of the British Mycological Society 1984, 82:127-150
50. Tully JG, Whitcomb RF, Hackett KJ, Williamson DL, Laigret F, Carle
P, Bove JM, Henegar RB, Ellis NM, Dodge DE, Adams J: Entomoplas-
ma freundtii sp. nov., a new species from a green tiger beetle
(Coleoptera: Cicindelidae). International Journal of Systematic Bac-
teriology 1998, 48:1197-1204
51. Tully JG, Whitcomb RF, Hackett KJ, Rose DL, Henegar RB, Bove JM,
Carle P, Williamson DL, Clark TB: Taxonomic descriptions of
eight new non-sterol-requiring mollicutes assigned to the ge-
nus Mesoplasma. International Journal of Systematic Bacteriology 1994,
44:685-693
52. Chapela IH, Rehner SA, Schultz TR, Mueller UG: Evolutionary his-
tory of the symbiosis between fungus-growing ants and their
fungi. Science 1994, 266:1691-1694
53. Weber NA: Symbiosis between fungus-growing ants and their
fungus. The American Philosophical Society 1955, 153-157
54. Yanagi M, Yaasato K: Phylogenetic analysis of the family Rhizo-
biaceae and related bacteria by sequencing of 16S rRNA
gene using PCR and DNA sequencer. FEMS Microbiology Letters
1993, 107:115-120 Publish with BioMed Central and every
55. Krieg NR, Holt JG: Bergey's manual of systematic bacteriology. Balti- scientist can read your work free of charge
more/London: Williams & Wilkins 1984
"BioMedcentral will be the most significant development for
56. Burgess NRH, McDermott SN, Withing J: Aerobic bacteria occur-
ing in the hind-gut of the cockroach Blatta orientalis. J. Hyg. disseminating the results of biomedical research in our lifetime."
(Lond.) 1973, 71: Paul Nurse, Director-General, Imperial Cancer Research Fund
57. Vasanthi V, Hoti SL: Microbial flora in gut of Culex quinquefas-
Publish with BMC and your research papers will be:
ciatus breeding in cess pits. Southeast Asian Journal of Tropical Med-
icine and Public Health 1992, 23:312-317 available free of charge to the entire biomedical community
58. Pasti MB, Pometto ALr, Nuti MP, Crawford DL: Lignin-solubilizing
ability of actinomycetes isolated from termite (Termitidae) peer reviewed and published immediately upon acceptance
gut. Applied and Environmental Microbiology 1990, 56:2213-2218 cited in PubMed and archived on PubMed Central
59. Briano JA, Patterson RS, Becnel JJ, Cordo HA: The black imported
fire ant, Solenopsis richteri, infected with Thelohania so- yours - you keep the copyright
lenopsae: intracolonial prevalence of infection and evidence BioMedcentral.com
Submit your manuscript here:
for transovarial transmission. J Inv Pathol 1996, 67:178-179
http://www.biomedcentral.com/manuscript/ editorial@biomedcentral.com

Page 11 of 11
(page number not for citation purposes)