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Short Perl tutorial

Instructor: Rada Mihalcea

Note: some of the material in this slide set was adapted from a Perl course taught at University of Antwerp

About Perl
Larry Wall Develops PERL October 18 Perl 3.0 is released under the GNU Protection License March 21 Perl 4.0 is released under the GPL and the new Perl Artistic License Perl 5.14 PERL is not officially a Programming Language per se. Walls original intent was to develop a scripting language more powerful than Unix Shell Scripting, but not as tedious as C. PERL is an interpreted language. That means that there is no explicitly separate compilation step. Rather, the processor reads the whole file, converts it to an internal form and executes it immediately. P.E.R.L. = Practical Extraction and Report Language
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A variable is a name of a place where some information is stored. For example:

$yearOfBirth = 1976; $currentYear = 2011; $age = $currentYear-$yearOfBirth; print $age;

The variables in the example program can be identified as such because their names start with a dollar ($). Perl uses different prefix characters for structure names in programs. Here is an overview: $: variable containing scalar values such as a number or a string @: variable containing a list with numeric keys %: variable containing a list with strings as keys &: subroutine *: matches all structures with the associated name

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Operations on numbers
Perl contains the following arithmetic operators: +: sum -: subtraction *: product /: division %: modulo division **: exponent Apart from these operators, Perl contains some built-in arithmetic functions. Some of these are mentioned in the following list: abs($x): absolute value int($x): integer part rand(): random number between 0 and 1 sqrt($x): square root

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Input and output

# age calculator print "Please enter your birth year "; $yearOfBirth = <>; chomp($yearOfBirth); print "Your age is ",2012-$yearOfBirth,".\n";

# count the number of lines in a file open INPUTFILE, <$myfile; (-r INPUTFILE) || die Could not open the file $myfile\n; $count = 0; while($line = <INPUTFILE>) { $count++; } print $count lines in file $myfile\n; # open for writing open OUTPUTFILE, >$myfile;

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Conditional structures
# determine whether number is odd or even

print "Enter number: "; $number = <>; chomp($number); if ($number-2*int($number/2) == 0) { print "$number is even\n"; } elsif (abs($number-2*int($number/2)) == 1) { print "$number is odd\n"; } else { print "Something strange has happened!\n"; }

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Numeric test operators

An overview of the numeric test operators: ==: equal !=: not equal <: less than <=: less than or equal to >: greater than >=: greater than or equal to All these operators can be used for comparing two numeric values in an if condition.

Truth expressions
three logical operators: and: and (alternative: &&) or: or (alternative: ||) not: not (alternative: !)

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Iterative structures
#print numbers 1-10 in three different ways $i = 1; while ($i<=10) { print "$i\n"; $i++; } for ($i=1;$i<=10;$i++) { print "$i\n"; }

foreach $i (1,2,3,4,5,6,7,8,9,10) { print "$i\n"; }

Stop a loop, or force continuation: last; # C break

next; # C continue;
Exercise: Read ten numbers and print the largest, the smallest and a count representing how many of them are dividable by three.

if (not(defined($largest)) or $number > $largest) { $largest = $number; } if ($number-3*int($number/3) == 0) { $count3++; }

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A paranthesis PERL philosophy(ies)

There is more than one way to do it

If you want to shoot yourself in the foot, who am I to stop you?

And a comment: DO write comments in your Perl programs!

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Basic string operations

- strings are stored in the same type of variables we used for storing numbers

- string values can be specified between double and single quotes

- !!! in the first one variables will be evaluated, in the second one they will not. Comparison operators for strings eq: equal ne: not equal lt: less than le: less than or equal to gt: greater than ge: greater than or equal to

Examples: if ($a eq $b) { . }

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String substitution and string matching

The power of Perl! The s/// operator modifies sequences of characters (substitute) The tr/// operator changes individual characters. (translate) The m// operator checks for matching (or in short //) (match) - the first part between the first two slashes contains a search pattern - the second part between the final two slashes contains the replacement. - behind the final slash we can put characters to modify the behavior of the commands. By default s/// only replaces the first occurrence of the search pattern - append a g to the operator to replace every occurrence. - append an i to the operator, to have the search case insensitive tr translates the characters in the first set of characters into the characters of the second set - if the second set is shorter, the last character is multiplied - if the second set is longer, the exceeding characters are truncated The tr/// operator allows the modification characters - c (replace the complement of the search class) - d (delete characters of the search class that are not replaced) - s (squeeze sequences of identical replaced characters to one character)

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# replace first occurrence of "bug" $text =~ s/bug/feature/; # replace all occurrences of "bug" $text =~ s/bug/feature/g; # convert to lower case $text =~ tr/[A-Z]/[a-z]/;

# delete vowels $text =~ tr/AEIOUaeiou//d;

# replace nonnumber sequences with x $text =~ tr/[0-9]/x/cs; # replace all capital characters by CAPS $text =~ s/[A-Z]/CAPS/g; Simple example: Print all lines from a file that include a given sequence of characters [emulate grep behavior]
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Regular expressions
Examples: \b: word boundaries 1. Clean an HTML formatted text \d: digits \n: newline \r: carriage return 2. Grab URLs from a Web page \s: white space characters \t: tab \w: alphanumeric characters 3. Transform all lines from a file into ^: beginning of string lower case $: end of string .: any character [bdkp]: characters b, d, k and p [a-f]: characters a to f [^a-f]: all characters except a to f abc|def: string abc or string def [:alpha:],[:punct:],[:digit:], - use inside character class e.g., [[:alpha:]] *: zero or more times +: one or more times ?: zero or one time {p,q}: at least p times and at most q times {p,}: at least p times {p}: exactly p times

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Lists and arrays

@a = (); # empty list @b = (1,2,3); # three numbers @c = ("Jan","Piet","Marie"); # three strings @d = ("Dirk",1.92,46,"20-03-1977"); # a mixed list Variables and sublists are interpolated in a list @b = ($a,$a+1,$a+2); # variable interpolation @c = ("Jan",("Piet","Marie")); # list interpolation @d = ("Dirk",1.92,46,(),"20-03-1977"); # empty list interpolation @e = ( @b, @c ); # same as (1,2,3,"Jan","Piet","Marie") Practical construction operators ($x..$y) @x = (1..6) # same as (1, 2, 3, 4, 5, 6) @y = (1.2..4.2) # same as (1.2, 2.2, 3.2, 4.2, 5.2) @z = (2..5,8,11..13) # same as (2,3,4,5,8,11,12,13) qw() ("quote word") function qw(Jan Piet Marie) is a shorter notation for ("Jan","Piet","Marie"). split function
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Split function
$string = "Jan Piet\nMarie \tDirk"; @list = split /\s+/, $string; # yields ( "Jan","Piet","Marie","Dirk" ) $string = " Jan Piet\nMarie \tDirk\n"; # watch out, empty string at the begin and end!!! @list = split /\s+/, $string; # yields ( "", "Jan","Piet","Marie","Dirk", "" ) $string = "Jan:Piet;Marie---Dirk"; # use any regular expression... @list = split /[:;]|---/, $string; # yields ( "Jan","Piet","Marie","Dirk" ) $string = "Jan Piet"; # use an empty regular expression to split on letters @letters= split //, $string; # yields ( "J","a","n"," ","P","i","e","t")

1. Tokenize a text: separate simple punctuation (, . ; ! ? ( ) ) 2. Add all the digits in a number
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More about arrays

@array = ("an","bert","cindy","dirk"); $length = @array; # $length now has the value 4 @array = ("an","bert","cindy","dirk"); $length = @array; print $length; # prints 4 print $#array; # prints 3 print $array[$#array] # prints "dirk" print scalar(@array) # prints 4 ($a, $b) = ("one","two"); ($onething, @manythings) = (1,2,3,4,5,6) # now $onething equals 1 # and # @manythings = (2,3,4,5,6) ($array[0],$array[1]) = ($array[1],$array[0]); # swap the first two Pay attention to the fact that assignment to a variable first evaluates the right handside of the expression, and then makes a copy of the result @array = ("an","bert","cindy","dirk"); @copyarray = @array; # makes a copy $copyarray[2] = "XXXXX";
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Manipulating lists and their elements

push ARRAY LIST appends the list to the end of the array. if the second argument is a scalar rather than a list, it appends it as the last item of the array. @array = ("an","bert","cindy","dirk"); @brray = ("evelien","frank"); push @array, @brray; # @array is ("an","bert","cindy","dirk","evelien","frank") push @brray, "gerben"; # @brray is ("evelien","frank","gerben")

pop ARRAY does the opposite of push. it removes the last item of its argument list and returns it. if the list is empty it returns undef. @array = ("an","bert","cindy","dirk"); $item = pop @array; # $item is "dirk" and @array is ( "an","bert","cindy")
shift ARRAY works on the left end of the list, but is otherwise the same as pop. unshift ARRAY LIST puts stuff on the left side of the list, just as push does for the right side.

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Working with lists

Convert lists to strings @array = ("an","bert","cindy","dirk"); print "The array contains $array[0] $array[1] $array[2] $array[3]"; # interpolate print "The array contains @array"; function join STRING LIST. $string = join ":", @array; # $string now has the value "an:bert:cindy:dirk" $string = join "+", "", @array; # $string now has the value "+an+bert+cindy+dirk" Iteration over lists for( $i=0 ; $i<=$#array; $i++){ $item = $array[$i]; $item =~ tr/a-z/A-Z/; print "$item "; } foreach $item (@array){ $item =~ tr/a-z/A-Z/; print "$item "; # prints a capitalized version of each item }
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Grep and map

grep CONDITION LIST returns a list of all items from list that satisfy some condition. For example: @large = grep $_ > 10, (1,2,4,8,16,25); # returns (16,25) @i_names = grep /i/, @array; # returns ("cindy","dirk") Example: Print all lines from a file that include a given sequence of characters [emulate grep behavior] map OPERATION LIST is an extension of grep, and performs an arbitrary operation on each element of a list. For example: @more = map $_ + 3, (1,2,4,8,16,25); # returns (4,5,7,11,19,28) @initials = map substr($_,0,1), @array; # returns ("a","b","c","d")

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Hashes (Associative Arrays)

- associate keys with values - allows for almost instantaneous lookup of a value that is associated with some particular key Existing, Defined and true. - If the value for a key does not exist in the hash, the access to it returns the undef value. - special test function exists(HASHENTRY), which returns true if the hash key exists in the hash - if($hash{$key}){...}, or if(defined($hash{$key})){...} return false if the key $key has no associated value

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Hashes (contd)
Examples $wordfrequency{"the"} = 12731; # creates key "the", value 12731 $phonenumber{"An De Wilde"} = "+31-20-6777871"; $index{$word} = $nwords; $occurrences{$a}++; # if this is the first reference, # the value associated with $a will # be increased from 0 to 1

%birthdays = ("An","25-02-1975","Bert","12-10-1953","Cindy","23-051969","Dirk","01-04-1961"); # fill the hash

%birthdays = (An => "25-02-1975", Bert => "12-10-1953", Cindy => "23-05-1969", Dirk => "01-04-1961" ); # fill the hash; the same as above, but more explicit @list = %birthdays; # make a list of the key/value pairs %copy_of_bdays = %birthdays; # copy a hash

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Operations on Hashes
- keys HASH returns a list with only the keys in the hash. As with any list, using it in a scalar context returns the number of keys in that list.

- values HASH returns a list with only the values in the hash, in the same order as the keys returned by keys.
foreach $key (sort keys %hash ){ push @sortedlist, ($key , $hash{$key} ); print "Key $key has value $hash{$key}\n"; }

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Operations on Hashes
reverse the direction of the mapping, i.e. construct a hash with keys and values swapped: %backwards = reverse %forward;
(if %forward has two identical values associated with different keys, those will end up as only a single element in %backwards)

- hash slice @birthdays{"An","Bert","Cindy","Dirk"} = ("25-02-1975","12-10-1953","23-051969","01-04-1961");

- each( HASH ) traverse a hash while (($name,$date) = each(%birthdays)) { print "$name's birthday is $date\n"; } # alternative: foreach $key (keys %birthdays)

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Multidimensional data structures

- Perl does not really have multi-dimensional data structures, but a nice

way of emulating them, using references

$matrix[$i][$j] = $x; $lexicon1{"word"}[1] = $partofspeech; $lexicon2{"word"}{"noun"} = $frequency; Array of arrays @matrix = ( # an array of references to anonymous arrays [1, 2, 3], [4, 5, 6], [7, 8, 9] );

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Multidimensional structures
Hash of arrays %lexicon1 = ( the => [ "Det", 12731 ], man => [ "Noun", 658 ], with => [ "Prep", 3482 ] ); Hash of hashes %lexicon2 = (

# a hash from strings to anonymous arrays

# a hash from strings to anonymous hashes of strings to

the => { Det => 12731 }, man => { Noun => 658 , Verb => 12 }, with => { Prep => 3482 } );

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Programming Example
A program that reads lines of text, gives a unique index number to each word and counts the word frequencies
#!/usr/local/bin/perl # read all lines in the input
$nwords = 0; while(defined($line = <>)){ # cut off leading and trailing whitespace $line =~ s/^\s*//; $line =~ s/\s*$//; # and put the words in an array @words = split /\s+/, $line; if(!@words){ # there are no words? next; } # process each word... while($word = pop @words){ # if it's unknown assign a new index if(!exists($index{$word})){ $index{$word} = $nwords++; } # always update the frequency $frequency{$word}++; } } # now we print the words sorted foreach $word ( sort keys %index ){ print "$word has frequency $frequency{$word} and index $index{$word}\n"; }

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A note on sorting
If we would like to have the words sorted by their frequency instead of by alphabet, we need a construct that imposes a different sort order. sort function can use any sort order that is provided as an expression. - the usual alphabetical sort order: sort { $a cmp $b } @list; !! $a and $b are placeholders for the two items from the list that are to be compared. Do not attempt to replace them with other variable names. Using $x and $y instead will not provide the same effect - a numerical sort order sort { $a <=> $b } @list; - for a reverse sort, change the order of the arguments: sort { $b <=> $a } @list; - sort the keys of a hash by their value instead of by their own identity, substitute the values for the arguments of sort: sort { $hash{$b} <=> $hash{$a} } ( keys %hash )
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Basics about Subroutines

Calls to subroutines can be recognized because subroutine names often start with the special character &. sub askForInput { print "Please enter something: "; } # function call &askForInput(); Tip: put related subroutines in a file (usually with the extention .pm = perl module) and include the file with the command require: # files with subroutines are stored here use lib "C:\PERL\MYLIBS"; # we will use this file require "nlp";

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Variables Scope
A variable $a is used both in the subroutine and in the main part program of the program. $a = 0; print "$a\n"; sub changeA { $a = 1; } print "$a\n"; &changeA(); print "$a\n"; The value of $a is printed three times. Can you guess what values are printed? - $a is a global variable.

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Variables Scope
Hide variables from the rest of the program using my.

my $a = 0; print "$a\n"; sub changeA { my $a = 1; } print "$a\n"; &changeA(); print "$a\n";

What values are printed now?

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Communication between subroutines and programs

Provide the arguments of the subroutine call: &doSomething(2,"a",$abc). - Perl converts all arguments to a flat list. This means that &doSomething((2,"a"),$abc) will result in the same list of arguments as the earlier example.

Access the argument values inside the procedure with the special list @_.
E.g. my($number, $letter, $string) = @_; # reads the parameters from @_ - A tricky problem is passing two or more lists as arguments of a subroutine. &sub(@a,@b) the subroutine receives the two list as one big one and it will be unable to determine where the first ends and where the second starts. - pass the lists as reference arguments: &sub(\@a,\@b).

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- Subroutines also use a list as output. # the return statement from a subroutine return(1,2); # or simply (1,2) # read the return values from the subroutine ($a,$b) = &subr().

- Read the main program arguments using $ARGC and @ARGV (same as in C)

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More about file management

open(INFILE,"myfile"): reading open(OUTFILE,">myfile"): writing open(OUTFILE,">>myfile"): appending open(INFILE,"someprogram |"): reading from program open(OUTFILE,"| someprogram"): writing to program opendir(DIR,"mydirectory"): open directo

Operations on an open file handle $a = <INFILE>: read a line from INFILE into $a @a = <INFILE>: read all lines from INFILE into @a $a = readdir(DIR): read a filename from DIR into $a @a = readdir(DIR): read all filenames from DIR into @a read(INFILE,$a,$length): read $length characters from INFILE into $a print OUTFILE "text": write some text in OUTFILE Close files / directories close(FILE): close a file closedir(DIR): close a directory

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Other file management commands

binmode(HANDLE): change file mode from text to binary unlink("myfile"): delete file myfile rename("file1","file2"): change name of file file1 to file2 mkdir("mydir"): create directory mydir rmdir("mydir"): delete directory mydir chdir("mydir"): change the current directory to mydir system("command"): execute command command die("message"): exit program with message message warn("message"): warn user about problem message

Example open(INFILE,"myfile") or die("cannot open myfile!"); Other About $_ Holds the content of the current variable Examples: while(<INFILE>) # $_ contains the current line read foreach (@array) # $_ contains the current element in @array
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