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Fatima Parvez
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DNA Replication
A process in which daughter DNAs are synthesized
using the parental DNAs as template.
Transferring the genetic information to the
descendant generation.
DNA replication is semi conservative
Each strand of template DNA is being copied.
DNA replication is semi discontinuous
The leading strand copies continuously
The lagging strand copies in segments (Okazaki
fragments) which must be joined
DNA replication is bidirectional
Bidirectional replication involves the formation of
replication forks, which move in opposite directions
DNA Replication
DNA replication includes:
Initiation replication begins at an origin of
replication
Elongation new strands of DNA are synthesized by
DNA polymerase
Termination replication is terminated differently in
prokaryotes and eukaryotes
Prokaryotic DNA Replication
The chromosome of a prokaryote is a circular molecule
of DNA.
Replication begins at one origin of replication and
proceeds in both directions around the chromosome.
Bidirectional replication of circular DNA molecules
Initiation
The enzymes involved in DNA replication are closely
associated in one large complex called, the replisome.
The replisome consists of
the primosome - composed of primase and
helicase
DNA polymerase III molecules
DNA gyrase, topoisomerase, SSB, ligase, initiator
proteins
The replication fork moves in opposite direction,
synthesizing both strands simultaneously.
DNA Replication in Bacteria
To begin DNA replication, unwinding enzymes called
DNA helicases cause the two parent DNA strands to
unwind and separate from one another at the origin of
replication to form two "Y"-shaped replication forks.

These replication forks are the actual site of DNA


copying.
DNA Replication in Bacteria
Helix destabilizing proteins bind to the single-
stranded regions so the two strands do not rejoin.
Enzymes called topoisimerases produce breaks in
the DNA and then rejoin them in order to relieve the
stress in the helical molecule during replication.
Model for the formation of a replication bubble at a replication origin in
E. coli and the initiation of the new DNA strand
Model for the replication machine, or replisome, the complex of key
replication proteins, with the DNA at the replication fork
Elongation
Primase binds to the first priming sequence on the leading strand
template and synthesizes a short RNA primer that is
complementary to the DNA template.
DNA Polymerase III uses the primer to initiate DNA synthesis by
adding deoxyribonucleotides to its 3 end. The leading strand
requires only one priming event, because DNA synthesis is
continuous thereafter, in the 5 3direction.
DNA Replication in Bacteria
As the strands continue to unwind in both directions
around the entire DNA molecule, new complementary
strands are produced by the hydrogen bonding of free
DNA nucleotides with those on each parent strand

As the new nucleotides line up opposite each parent strand


by hydrogen bonding, enzymes called DNA polymerases
join the nucleotides by way of phosphodiester bonds.
DNA Replication by
Complementary Base Pairing
DNA Replication in Bacteria
DNA polymerase enzymes are only able to join the
phosphate group at the 5' carbon of a new nucleotide
to the hydroxyl (OH) group of the 3' carbon of a
nucleotide already in the chain.

As a result, DNA can only be synthesized in a 5' to 3'


direction while copying a parent strand running in a 3' to
5' direction.
DNA Replication in Bacteria
DNA polymerase enzymes cannot begin a new DNA chain from
scratch.

It can only attach new nucleotides onto 3' OH group of a nucleotide


in a preexisting strand.
To start the synthesis of the leading strand and each DNA fragment
of the lagging strand, an RNA polymerase complex called a
primosome or primase is required.
The primase is capable of joining RNA nucleotides without requiring
a preexisting strand of nucleic acid - forms what is called an RNA
primer .
RNA primer
DNA Replication in Bacteria
After a few nucleotides are added, primase is replaced by
DNA polymerase.
DNA polymerase can now add nucleotides to the 3' end of
the short RNA primer.
DNA Replication in Bacteria
The two strands are antiparallel
one parent strand - the one running 3' to 5' is called the
leading strand can be copied directly down its entire
length .
the other parent strand - the one running 5' to 3' is
called the lagging strand must be copied
discontinuously in short fragments called as Okazaki
fragments.
Okazaki fragments are of around 100-1000
nucleotides each as the DNA unwinds.
For the lagging strand, DNA synthesis is discontinuous
and requires a series of RNA primers. DNA is
synthesised at the 3 end of each primer, generating an
okazaki fragment that grows untill it meets the adjacent
fragments. The RNA primer is then removed by the 5 to
3 exonuclease activity of DNA polymerase I and
replaced with DNA by the polymerase activity of the
same enzyme.
DNA ligase links together adjacent Okazaki fragments with
covalent, phosphodiester bonds.
It joins the 5 phosphate of one DNA molecule to the 3 OH of
another, using energy in the form of NAD (prokaryotes) or ATP
(eukaryotes). It prefers substrates that are double-stranded, with
only one strand needing ligation, and lacking gaps.