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VIN KHOA HC V CNG NGH VIT NAM
VIN CNG NGH SINH HC
-------------------------
Nguyn Th Hi Yn
NI DUNG BO CO
1.
2.
3.
4.
5.
6.
7.
8.
M U
TNG QUAN TI LIU
MC TIU NGHIN CU
NI DUNG NGHIN CU
VT LIU V PHNG PHP NGHIN CU
KT QU NGHIN CU
KT LUN V NGH
CC CNG TRNH CNG B LIN QUAN N LUN N
I. M U
C1
CP
ihpRNA
Dicer
siRNA
RNA-Induced Silencing
Complex
ds-RNA
RNAi
Virus RNA
K Thut
GATEWAY
MU C CHUA
NHIM BNH
PHN LP GEN
CA TYLCV
THIT K VECTOR
CU TRC RNAi
Thng qua
A. tumefaciens
BIN NP VO C
CHUA PT18
Phn tch PCR
nh gi kh
nng khng
TYLCV
Cy chuyn gen
Ti LIU
liu chia
s ti:
wWw.SinhHoc.edu.vn
V. VT
V
PHNG
PHP NGHIN CU
2. PHNG PHP NGHIN CU
Ti liuVI.
chia
s ti:
wWw.SinhHoc.edu.vn
KT
QU
NGHIN CU
1. PHN LP GEN VIRUS TYLCV
1.1. Kho st v thu thp mu l c chua b bnh xon vng l
X ng t, Ph Lng
DDd
C chua di
Mc
nhim bnh
1
Bn Nguyn, i t
Td
C chua di
Huyn nh Ha
iHd
C chua di
P. ng Quang, TPTN
Qd
C chua di
Tuyn Quang
TQd
C chua di
Bc Kn
BKd
C chua di
QTd
C chua di
Huyn V Nhai
VNt
C chua lai
TVd
C chua di
10
u, Ph Lng
PLt
C chua lai
11
TLt
C chua lai
12
P. Thnh n, TPTN
Td
C chua di
13
P. Tn Long, TN
TaLt
C chua lai
14
Sc Sn, H Ni
SSt
C chua lai
15
Huyn ng H
Ht
C chua lai
Stt a im thu mu
K hiu
Loi c chua
Ti
liu
chia
sgiti:
Ch thch: mc nhim
bnh
c
nh
theowWw.SinhHoc.edu.vn
tiu chun Lapidot, Friedmann, 2002
Ti liuVI.
chia
s ti:
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KT
QU
NGHIN CU
1. PHN LP GEN VIRUS TYLCV
1. 2. Nhn dng gen, xc nh v phn tch trnh t nucleotide gen CP
Ti liuVI.
chia
s ti:
wWw.SinhHoc.edu.vn
KT
QU
NGHIN CU
1. PHN LP GEN VIRUS TYLCV
QT
PL
QT
PL
QT
PL
QT
PL
QT
PL
QT
PL
QT
PL
10
TGTACAAAAG
..........
90
CATGTAGGGA
..........
170
TAAGTCAGTT
..........
250
TTTTAGTACG
..........
330
ACAGCCACGG
..........
410
TGCAAGCAAG
..........
490
AGTATGATAA
..........
20
CCCTGACGTT
......T...
100
AGGTAATTTG
..........
180
TATGTTTTGG
..........
260
TGATAGAAGA
..........
340
TGAAGAACGA
..........
420
GAGCAGGCAA
..........
500
CCACACAGAG
..........
30
CCACGAGGAT
..........
110
TGTGTCGGAT
..........
190
GTAAGATCTG
..........
270
CCTTTTGGAA
..........
350
TAACAGAGAT
..........
430
TAGTTAGGAA
..........
510
AATGCTTTGT
..........
40
GTGAAGGGCC
.......C..
120
GTTACACGTG
..........
200
GATGGATGAG
..........
280
CTCCCCAAGA
..........
360
CGTTTTCAAG
..........
440
GTTTATGAAG
..........
520
TATTGTATAT
..........
50
ATGTAAAGTC
..........
130
GTAACGGATT
..........
210
AACATTAAGA
..........
290
TTTTGGTCAG
..........
370
TTCTTCGTCG
..........
450
GTGAACAACC
..........
530
GGCATGTACA
.........T
60
CAGTCTTATG
..........
140
GACTCATCGT
..........
220
CGAAGAATCA
..........
300
GTGTTTAACA
..........
380
ATTTCAGGCT
..........
460
ATGTGACGTA
..........
540
CATGCTTCTA
.....C..C.
70
AACAGCGTCA
..........
150
GTTGGGAAGA
..........
230
TACTAATACG
..........
310
TGTATGATAA
..........
390
ACTGTTACTG
..........
470
TAATCATCAA
..........
80
TGATGTAGCC
..........
160
GGTTCTGTAT
..........
240
GTCATGTTCT
..........
320
CGAGCCAAGT
..........
400
GTGGTCAGTA
..........
480
GAGGCTGCGA
..........
ATCC
.C..
Nhm ph bin
ca Vit Nam
Hnh
Biuloi
hnh
phncy
loida
hnh
cy
[da
vo trnh
t ca
vng
gen CP
ca
TYLCV
Biu3.5.
phn
vo
trnh
t vng
gen CP
TYLCV
phn
lp
trn cphn
chua lp
di
trn
c
chua
di
ti
QT
v
DD,
Thi
Nguyn
vi
cc
trnh
t
khc
phn
lp
c
ti
Vit
ti QT v DD, Thi Nguyn vi cc trnh t khc phn lp c ti Vit Nam v cc trnh t
Nam v cc trnh t gen V1 ca TYLCV ng k trn GenBank (bng 3.2)]. Nhng gi tr
gen CP ca TYLCV ng k trn GenBank
bootstrap ln hn 70% mi c bin din.
Ti liuVI.
chia
s ti:
wWw.SinhHoc.edu.vn
KT
QU
NGHIN CU
1. PHN LP GEN VIRUS TYLCV
1.3. Gii trnh t vong gen DNA-A ca TYLCV
STT gene
1
2
3
4
5
6
7
DNA-A
Pre-CP
CP
C3
C2
C1
C4
Kch thc
(v tr nucleotide)
2744
351 (131-481)
774 (291-1064)
405 (1060-1464)
408 (1205-1612)
1089 (1512-2600)
294 (2150-2443)
NA
69.6
90.7
AY602166.1.seq
GU723713.1.seq
DQ641695.1.seq
AF414287.seq
FN434083.1.seq
FN297834.1.seq
TYLCV-QT.seq
DQ641705.seq
AF264063.seq
GQ338767.seq
AJ704603.1.seq
EF165536.1.seq
68.3
99.5
100.0
80.7
99.5
100.0
77.6
20.2
20
15
10
Nucleotide Substitutions (x100)
Bootstrap Trials = 1000, seed = 111
Ti liu VI.
chiaKT
s ti:QU
wWw.SinhHoc.edu.vn
NGHIN CU
2. THIT K VECTOR CU TRC RNAi MANG GEN TYLCV
Ti liu chia
ti: wWw.SinhHoc.edu.vn
VI.sKT
QU NGHIN CU
3. BIN NP CU TRC RNAi MANG GEN TYLCV VO C CHUA
Hnh nh chuyn gen vo c chua
CPi: 24/26
C1.2+CP2: 21/23
Ti liu chia
ti: wWw.SinhHoc.edu.vn
VI.sKT
QU NGHIN CU
3. BIN NP CU TRC RNAi MANG GEN TYLCV VO C CHUA
Bin np cu trc RNAi/TYLCV-CPi v RNAi/TYLCV-C1.2+CP2 vo c chua PT18
Cu trc
RNAi
RNAi/TYLCV
-CPi
RNAi/TYLCV
-C1.2+CP2
L th
nghim
S mnh l
bin np
S cm
chi hnh
thnh/ C+
Km
134
186
35
420
370
104
11
220
212
37
Tng s
774
768
176
26
104
83
27
142
87
48
300
270
93
14
Tng s
546
440
168
23
30
30
54*
77*
20*
S chi
sng st
/C+Km
S cy ra
r /B + Km
10
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0,3
15
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
1
Mc bnh TB
50
1,6
2,4
0,6
1,4
1,8
1,6
1,8
1,8
3
1
3
2
2,2
0,6
2
1,8
1,8
1,4
1,4
0,6
2
2
1,8
1,2
4
2
2
1
1
2
2
2
2
3
1
3
2
2
1
2
2
2
1
1
1
2
2
2
1
4
10
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0,3
15
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
1
Mc bnh TB
45
1,6
0
1,6
0
1,8
2,8
2,6
0
1,8
1,4
1,6
1
2,6
1,8
0,6
0
1,4
0,6
1
1,6
1,8
4
50
1,8
0
1,6
0
1,8
2,8
2,6
0
2
1,4
1,6
1
3
1,8
0,6
0
1,4
0,6
1
1,6
1,8
4
2
0
2
0
2
3
3
0
2
1
2
1
3
2
1
0
2
1
1
2
2
4
LCP0
LCP1
Mc
nhim
bnh
10
ngy
20
ngy
30
ngy
40 ngy
50 ngy
T l khng
sau phn
tch (%)
100
75
12,5
25
50
37,5
33,3
33,3
33,3
54,2
58,4
58,4
4,2
8,3
8,3
8,3
100
76,2
47,6
38,1
19
19
523,8
38,1
19
23,8
23,8
14,3
28,6
42,9
42,9
14,3
14,3
14,3
20
80
10
50
40
10
90
100
100
100
Ti liu chiaVI.
s ti:
KTwWw.SinhHoc.edu.vn
QU NGHIN CU
5. PHN TCH PHN LI GEN CHUYN V NH GI KH NNG KHNG TYLCV TH H T1
Kh nng khng Km
Tng s
ht gieo
S cy
khng Km
LCP1-4
142
102
S cy
khng
khng
Km
36
LCP1-8
54
54
LCP1-16
89
66
23
Dng
T l
2,83 : 1 0.087
-
2,87 : 1 0.034
VI.sKT
QU NGHIN CU
Ti liu chia
ti: wWw.SinhHoc.edu.vn
LCP1-4
S cy
phn tch
Mc 0
Mc 1
Mc 2
Mc 3
Mc 4
43
39,6
27,9
20,9
11,6
VII. KT LUN
VII. KT LUN
VIII. NGH