Comparison of public peak detection algorithms for MALDI mass spectrometry data analysis

Supplementary documents for the manuscript. (1)All the programs used in comparison are open source and can be downloaded from the following websites:

Cromwell: Anderson Cancer Center LMS MassSpec a!elet : "ioconductor pac#ages $%&cess : "ioconductor pac#ages L'M$'C

(())ata we use

Simulation data: Anderson Cancer Center* we select the first (+ data sets. %eal data: Aurum )ata Set. e select (,, spectra and generate ground truth for them.

1.%aw data(-. file) (./rue pea#s(-. file) (0)%esults: 1.%esults for simulation data (.ip file) (.%esults for real data (.ip file)