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    Examples of multistate models of biological systems. Bacterial chemotaxis signaling pathway CaMKII regulation ERBB receptor signaling Eukaryotic synthetic gene circuits RNA signaling Kappa Cooperativity of allosteric proteins.

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    pcbi.1003844.s001

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    Examples of multistate models of biological systems. Bacterial chemotaxis signaling pathway CaMKII regulation ERBB receptor signaling Eukaryotic synthetic gene circuits RNA signaling Kappa Cooperativity of allosteric proteins.

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    7 views1 page

    Pcbi 1003844 s001

    Uploaded by

    cahyoaam
    Examples of multistate models of biological systems. Bacterial chemotaxis signaling pathway CaMKII regulation ERBB receptor signaling Eukaryotic synthetic gene circuits RNA signaling Kappa Cooperativity of allosteric proteins.

    Copyright:

    © All Rights Reserved
    Download as DOCX, PDF, TXT or read online from Scribd
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    of 1

    TableS1:Examplesofmultistatemodelsofbiologicalsystems

    Biologicalsystem

    Specification

    Computation

    Reference

    Bacterialchemotaxis
    signalingpathway

    StochSim

    StochSim

    [61]

    CaMKIIregulation

    StochSim

    StochSim

    [27]

    ERBBreceptor
    signaling

    BioNetGen

    NFSim

    [29]

    Eukaryoticsynthetic
    genecircuits

    BioNetGen,PROMOT
    [62]

    COPASI[63]

    [30]

    RNAsignaling

    Kappa

    KaSim

    [64]

    Cooperativityof
    allostericproteins

    AllostericNetwork
    Compiler(ANC)

    Matlab

    [6]

    Chemosensingin
    Dictyostelium

    Simmune

    Simmune

    [44]

    Tcellreceptor
    activation

    SSC

    SSC

    [65]

    Humanmitotic
    kinetochore

    BioNetGen

    SRSim

    [66]

    Cellcycleoffission
    yeast

    MLRules

    JAMESII[42]

    [41]

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