What's New Introduction Site Map Search the CCP14 Download Programs What do you want to do? (lists of software by crystallographic method) Tutorials Solutions (This Webpage Page in No Frames Mode) CCP14 Methods, Problems and Solutions GSAS (General Structure Analysis System) Rietveld powder diffraction and Single Crystal software Setting up POLA or IPOLA and POLA correctly for a powder XRD system containing a diffracted beam Graphite Monochromator in GSAS The CCP14 Homepage is at http://www.ccp14.ac.uk [Back to Problems and Solutions] [Back to GSAS Hints/Resources] [The reference to use for GSAS in any resulting publications is: A.C. Larson and R.B. Von Dreele, "General Structure Analysis System (GSAS)", Los Alamos National Laboratory Report LAUR 86-748 (1994).] [The reference to cite in any resulting publications for using EXPGUI is: B. H. Toby, EXPGUI, a graphical user interface for GSAS, J. Appl. Cryst. (2001). 34, 210-213] About POLA and IPOLA (Summary: Differences between the "ideal" polarisation values for a Graphite Monochromator and "rened" values are expected due to other effects such as Mosaic spread. ) From: "Bob Von Dreele" Subject: Difference between using POLA only and IPOLA/POLA To: Lachlan Cranswick [l.m.d.cranswick@dl.ac.uk] Date: Wed, 09 Oct 2002 08:58:49 -0700 The two functions are "identical" in effect but differ by a scaling factor. IPOLA=1 is in there to match the "traditional" Azaroff function for diffracted beam monochromators. The difference between theory & measurement for POLA is "expected". The IPOLA=0 function is my adaption so that POLA is the polarized fraction. POLA=0.50 for no polarization and POLA=1.0 for perfect polarization nearly realized in synchrotron radiation & vertical diffraction. The following two methods show how to setup for the Graphite Monochromator by rening on a suitable standard. In this case, annealed Y2O3. Users of the DBW derived CSIRO Riet7 software or Koalariet would probably feel more at ease using the second IPOLA/POLA method. (In Koalariet, the 2-theta value is inserted). Click here to obtain GSAS exp and data les of Y2O3 data for determining Polarisation by both methods. (Data from the IUCr CPD Quantitative Phase Analysis Round Robin) Philips 3020 Goniometer with PW3710 Controller (17.3cm Goniometer Radius). Copper Long Fine Focus X-ray Tube set at 40kV and 40mA Flat-plate Bragg-Brentano, reflection geometry Sample backpacked into standard Philips sample holders For non Pharmaceutical Samples: Step Scan from 5 to 150, at 0.02 degree steps and 3 seconds per step 1 degree divergence slit Incident beam Sollers Slit Unspun sample 0.3mm receiving slit Setting up POLA or IPOLA and POLA correctly for a powde... http://www.ccp14.ac.uk/solution/gsas/graphite_monochromat... 1 of 4 05/05/2012 14:55 Diffracted beam Sollers slit 1 degree scatter slit Diffracted beam curved Graphite Monochromator Proportional Counter 002 reection of Graphite: 2-theta with Cu X-rays = 26.603 (d=3.3480). Calculated cos^2 2-theta = 0.80 Using "POLA only method" to handle a Graphite Monochomator within GSAS The overall advice is to determine the best polarisation value by systematic renement on an appropriate standard; where data collected up to the angular limit of the Powder XRD (140 to 160 degrees 2-theta). It can be advisable to t the prole with a Le Bail t, then x prole parameters, "shft" offset correction and unit cell values. Be wary that there can be considerable correlation between the polarisation values, thermal values and the background. Using a standard (like cubic annealed Y2O3) where peaks are well separated is advised. First you may want to x the thermals at reasonable values, then systematically vary the POLA values and see what this does to the R-factors. Then you may want to repeat the above but allow the thermals to vary. Finally, set POLA at extreme values and see if it renes with the thermals to consistent values. If the renement looks robust, then use this value of POLA for samples generated by this diffractometer. In the following table, POLA consistently renes to a value of 0.523(3) for this particular XRD conguration with a Graphite Monochromator. Results from rening cubic Y2O3 using the above described strategy POLA R F**2 Rwp Y1thermal Y2thermal O1Thermal Thermals (fixed) 0.40 0.0745 0.1148 0.00400 0.00400 0.00800 Fixed 0.45 0.0525 0.1022 0.00400 0.00400 0.00800 Fixed 0.50 0.0333 0.0952 0.00400 0.00400 0.00800 Fixed 0.55 0.0270 0.0937 0.00400 0.00400 0.00800 Fixed 0.60 0.0377 0.0972 0.00400 0.00400 0.00800 Fixed 0.65 0.0497 0.1040 0.00400 0.00400 0.00800 Fixed 0.70 0.0624 0.1130 0.00400 0.00400 0.00800 Fixed 0.75 0.0751 0.1299 0.00400 0.00400 0.00800 Fixed
0.40 0.0551 0.1051 0.00162 0.00065 -0.00379 Refined 0.45 0.0370 0.0969 0.02763 0.00170 -0.00076 Refined 0.50 0.0264 0.0933 0.00366 0.00276 0.00177 Refined 0.55 0.0266 0.0933 0.00471 0.00382 0.00432 Refined 0.60 0.0339 0.0961 0.00576 0.00488 0.00694 Refined 0.65 0.0434 0.1006 0.00681 0.00593 0.00907 Refined 0.70 0.0526 0.1062 0.00787 0.00698 0.01112 Refined 0.75 0.0613 0.1124 0.00891 0.00800 0.01296 Refined Setting up POLA or IPOLA and POLA correctly for a powde... http://www.ccp14.ac.uk/solution/gsas/graphite_monochromat... 2 of 4 05/05/2012 14:55 Refining POLA from (and Thermals starting at Y1=0.004, Y2=0.004, O1=0.008) 0.40 0.523 0.0247 0.0930 0.00415 0.00326 0.00291 Refined 0.50 0.523 0.0248 0.0929 0.00415 0.00326 0.00292 Refined 0.75 0.523 0.0248 0.0929 0.00415 0.00326 0.00292 Refined Background Refining POLA from 0.5 (and Thermals starting at Y1=0.004, Y2=0.004, O1=0.008) POLA R F**2 Rwp Y1thermal Y2thermal O1Thermal Thermals 2 term Shifted Cheby 0.472 0.0345 0.1420 0.00203 0.00087 -0.00018 Refined 3 term Shifted Cheby 0.555 0.0309 0.1215 0.00537 0.00451 0.00319 Refined 4 term Shifted Cheby 0.529 0.0335 0.1124 0.00462 0.00417 0.00307 Refined 5 term Shifted Cheby 0.517 0.0327 0.1025 0.00460 0.00370 0.00268 Refined 6 term Shifted Cheby 0.532 0.0307 0.0932 0.00494 0.00452 0.00238 Refined 7 term Shifted Cheby 0.527 0.0291 0.0877 0.00490 0.00394 0.00326 Refined 8 term Shifted Cheby 0.530 0.0263 0.0850 0.00497 0.00423 0.00358 Refined 9 term Shifted Cheby 0.529 0.0252 0.0844 0.00491 0.00415 0.00307 Refined 10 term Shifted Cheby 0.529 0.0268 0.0841 0.00490 0.00415 0.00293 Refined 11 term Shifted Cheby 0.530 0.0264 0.0831 0.00495 0.00422 0.00348 Refined 12 term Shifted Cheby 0.529 0.0247 0.0829 0.00492 0.00419 0.00356 Refined 13 term Shifted Cheby 0.528 0.0250 0.0826 0.00483 0.00413 0.00383 Refined 14 term Shifted Cheby 0.530 0.0226 0.0821 0.00498 0.00424 0.00329 Refined 15 term Shifted Cheby 0.530 0.0243 0.0820 0.00507 0.00431 0.00309 Refined 16 term Shifted Cheby 0.529 0.0247 0.0809 0.00491 0.00419 0.00294 Refined 17 term Shifted Cheby 0.529 0.0245 0.0804 0.00489 0.00416 0.00308 Refined 18 term Shifted Cheby 0.528 0.0247 0.0804 0.00488 0.00415 0.00310 Refined 19 term Shifted Cheby 0.530 0.0249 0.0795 0.00501 0.00447 0.00223 Refined 20 term Shifted Cheby 0.529 0.0243 0.0793 0.00500 0.00437 0.00244 Refined --+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+ Using neutron derived thermals from Smrcok L, Duris P (1989) P. 375-378 - 8 term Cheby Background POLA R F**2 Rwp Y1thermal Y2thermal O1Thermal Thermals Refined value 0.40 0.549 0.0295 0.0862 0.00760 0.00510 0.00460 Fixed 0.45 0.549 0.0295 0.0862 0.00415 0.00326 0.00291 Fixed 0.50 0.549 0.0295 0.0862 0.00415 0.00326 0.00292 Fixed 0.55 0.549 0.0295 0.0862 0.00415 0.00326 0.00292 Fixed 0.60 0.549 0.0295 0.0862 0.00415 0.00326 0.00292 Fixed 0.65 0.549 0.0295 0.0862 0.00415 0.00326 0.00292 Fixed 0.70 0.549 0.0295 0.0862 0.00415 0.00326 0.00292 Fixed 0.75 0.549 0.0295 0.0862 0.00415 0.00326 0.00292 Fixed Using POLA and IPOLA=1 to handle a Graphite Monochomator within GSAS As explained above by Bob, set IPOLA to 1 (numeral one), then enter the calculated POLA value as "cos^2 2-theta" for the monochromator. (coefcient in formula for polarisation correction when using a monochromator.) Then for a graphite monochromator, calculate the "cos^2 2-theta" of the 002 graphite reection (For Cu X-rays this is at an angle of 26.6 degrees 2-theta). The calculated value should be 0.80. Enter this value into the POLA eld and rene the structure. Near the end of the renement, allow POLA to rene (which in this case renes to 0.91(1)). Similarly to the above "POLA only method", it would be best to do similar systematics to ensure you have a robust and reliable result. Setting up POLA or IPOLA and POLA correctly for a powde... http://www.ccp14.ac.uk/solution/gsas/graphite_monochromat... 3 of 4 05/05/2012 14:55 [Back to Problems and Solutions] [Back to GSAS Hints/Resources] [Generating and Manipulating Fourier Maps from Powder Data in GSAS] [Getting back the Forplot Menu after plotting a Windows Fourier Map] [Generating a VRML based 3D Structure and Electron Density Contour Map in GSAS] [Viewing GSAS Fourier Contour Maps in 3rd party programs Using Scott Belmonte's GPL'd FOUE software] [CCP14 Home: (Frames | No Frames)] CCP14 Mirrors: [UK] | [CA] | [US] | [AU] What's New Introduction Site Map Search the CCP14 Download Programs What do you want to do? (lists of software by crystallographic method) Tutorials Solutions (This Webpage Page in No Frames Mode) If you have any queries or comments, please feel free to contact the CCP14 Setting up POLA or IPOLA and POLA correctly for a powde... http://www.ccp14.ac.uk/solution/gsas/graphite_monochromat... 4 of 4 05/05/2012 14:55