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Calmodulin: a
prototypical
calcium sensor
David Chin and Anthony R. Means
Calmodulin is the best studied and prototypical example of the
EF-hand family of Ca21-sensing proteins. Changes in
intracellular Ca21 concentration regulate calmodulin in three
distinct ways. First, at the cellular level, by directing its
subcellular distribution. Second, at the molecular level, by
promoting different modes of association with many target
proteins. Third, by directing a variety of conformational states in
calmodulin that result in target-specific activation. The
calmodulin-dependent regulation of protein kinases illustrates the
potential mechanisms by which Ca21-sensing proteins can
recognize and generate affinity and specificity for effectors in a
Ca21-dependent manner.
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PII: S0962-8924(00)01800-6
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(a)
(a)
Ca2+
(b)
Ca2+
Amplitude
modulated (AM)
Frequency
modulated (FM)
Ca2+
Ca2+
Nucleus
Ca2+
FIGURE 2
Effectors
Ca2+ sensors
FIGURE 1
(a) Sources of intracellular Ca21 signals. Ca21 enters cells via
extracellular plasma-membrane receptors or from intracellular
stores, producing transient local or global changes in its
distribution. The Ca21 oscillations are modulated in their
amplitudes (AM) or frequencies (FM) and are therefore capable
of conveying signalling information in complex ways. (b) EFhand Ca21-binding proteins are classified as buffers/transporters
and sensors. The Ca21 sensors change conformation on binding
Ca21 and transduce changes in cell function by regulating
downstream effectors.
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(a)
(b)
(c)
46
Striatin
47
CAP-19
48
EGF-receptor
49
50
Connexin 32
51
ChURP
52
High MW protein
53
Beta-2-glycoprotein
54
Retinal proteins
55
Extracellular proteins
56
Sperm proteins
57
Plant proteins
58
Yeast proteins
59
Phosphatidylinositol 3-kinase
60
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Low [Ca2+]
indirectly involved in protein phosphorylation.
CaM also regulates the activities of the plasmamembrane Ca21 pump, various ion channels, the
ryanodine receptor and isoforms of the inositol
(1,4,5)-trisphosphate receptor. The list of CaM targets is extensive and constantly growing (Table 1).
Are there differences in the mechanisms by which
CaM and other Ca21 transducers regulate their
targets? CaM performs a variety of roles, and CaMbinding proteins can be categorized into at least six
classes based on their modes of regulation in the
presence and absence of Ca21 (Fig. 4). One group of
effectors, which we designate class A, binds essentially irreversibly to CaM irrespective of Ca21. CaM
is thus more appropriately considered a subunit of
these proteins. One example is phosphorylase
kinase, an enzyme that requires denaturing conditions to dissociate CaM but is activated in the
presence of Ca21. Members of a second group of effectors (class B) bind to CaM in the absence of Ca21
(i.e. to the apo-CaM form) but dissociate reversibly
in the presence of Ca21 (Ref. 20). Examples include
proteins such as neuromodulin and neurogranin,
which might serve as intracellular reservoirs for
CaM at resting concentrations of Ca21 but liberate
Ca21-activated CaM in response to a transient Ca21
signal.
A third group of effectors (class C) includes
smooth-muscle myosin-light-chain kinase (MLCK)
and calcineurin. These class-C effectors form lowaffinity, inactive complexes with CaM at low concentrations of Ca21, when CaM is unoccupied or
partially occupied by Ca21 [,2 (mole Ca21) (mole
CaM)21]. At high concentrations of Ca21, these targets engage in a high-affinity complex and are activated by CaM21,22. A fourth class of proteins (class D)
binds to CaM in the presence of Ca21, but, in this
case, CaM inhibits their function. This group includes enzymes such as select members of the Gprotein-receptor kinases23, as well as the inositol
(1,4,5)-trisphosphate receptor type 124.
A fifth group of effectors (class E), such as the
CaM-dependent protein kinases I, II and IV, exhibit
more conventional behaviour and are activated by
Ca21CaM. The class-E targets also exhibit an accessory form of regulation in which CaM binding promotes their regulation (specifically via phosphorylation) by another CaM-regulated kinase (i.e. a
CaM-kinase kinase ), which we designate class F. In
the specific case of the multimeric CaM kinase II,
both the substrate and the catalytic subunits require
CaM binding to promote intermolecular autophosphorylation25. This novel case, in which one CaMdependent protein (class E) is directly regulated by
another CaM-dependent protein (class F), demonstrates the convergence of different CaM-regulated
pathways and is indicative of CaM-signalling
cascades.
The observation that CaM regulates a specific set
of proteins yet engages in different types of Ca21dependent interactions implies that CaM and its
targets both exhibit certain complementary features
that enable CaM recognition but possess other aspects that still allow CaM to discriminate between
trends in CELL BIOLOGY (Vol. 10) August 2000
apo
CaM
+A
apo
CaM
+B
CaM
High [Ca2+]
CaM-A
CaM-A+
B
CaM-B
CaM
+B
+C
CaM-C
CaM-C+
+D
CaM
CaM-D-
CaM-E++
CaM-E+
CaM
+E
+F
CaM-F+
trends in Cell Biology
FIGURE 4
Ca21-dependent functions of various classes of calmodulin-binding (CaM-binding)
proteins. CaM and various classes of targets exist in free or bound states. Target
classes A, B and C are associated with CaM or Ca21-free CaM (apo-CaM) at low
(resting) intracellular free Ca21 concentrations (red). When Ca21 concentrations are
high (green), class B dissociates from CaM, classes D, E and F associate with
CaM, classes A, C, E and F are activated by CaM (1), and class D is inactivated
by CaM (2).
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(a)
CaM KI
S K W K Q A F N A T A V V R H M R K
CaM KII
R K L K G A I L T T M L A T R N F S
smMLCK
R K W Q K T G H A V R A I G R L S S
skMLCK
R R W K K N F I A V S A A N R F K K
Ca
2+ATPase
CaM KK
I L W F R G L N R I Q T Q I R V V N
P S W T T V I L V K S M L R K R S F
(b)
(c)
Main chain of
Ca2+4CAM
CAM-binding domain
of smMLCK
Conserved tryptophan
Met124 residue
326
FIGURE 5
(a) Alignment of amino acid sequences from selected
calmodulin-binding (CaM-binding) domains. The enzymes are
CaM kinase I (CaM KI), CaM kinase II (CaM KII), smooth- and
skeletal-muscle myosin-light-chain kinases (smMLCK and
skMLCK), the plasma-membrane Ca21-pumpATPase (Ca21
ATPase) and CaM-kinase kinase (CaM KK). In most cases, a
hydrophobic residue (red) from the corresponding peptides
interacts with the C-terminal domain of Ca21CaM. The boxed
residue in CaM KI is Trp303. The N-terminal domain of
Ca21CaM interacts primarily with the C-terminal half of the
peptides. (For additional information on CaM binding domains,
see http://calcium.oci.utoronto.ca/) (b) Two crystal
structures showing the main chain of Ca214CaM on the left and
CaM kinase I on the right. The N-terminal domain of CaM and
the ATP-binding lobe of CaM kinase I are both positioned on top,
with helices red and sheets green. The Trp303 side chain from
the CaM-binding domain of CaM kinase I (black) extends away
from the enzyme in the direction of CaM. (c) Crystal structure
showing the main chain of Ca214CaM (white) in complex with
the helical CaM-binding domain of smooth-muscle myosin-lightchain kinase (green). CaM wraps around the helix so that the
conserved Trp of the peptide makes contact with Met124 (red)
in the C-terminal domain of CaM.
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are required for Ca21CaM-dependent activation37,38. Furthermore, deletion studies of CaM
kinase I show that the C-terminal portion of its
CaM-binding sequence confers high affinity for
Ca21CaM, as well as CaM-dependent activity39.
These results complement those from experiments
on CaM showing that the hydrophobic pocket in its
N-terminal domain generates a high-affinity complex with CaM kinase II, activates smooth-muscle
MLCK and combines the functions of high-affinity
binding and activation of CaM kinase I35,40.
In comparison with unbound Ca21CaM, the
Ca21CaMpeptide complexes exhibit a dramatic
contraction enabling CaM to wrap around and sequester the helical CaM-binding peptides (Fig. 5c).
Experiments on hydrophilic residues of CaM show
that charged and polar residues are also required to
activate the smooth-muscle MLCK by promoting
the accessibility of substrate to this particular enzyme. Surprisingly, the hydrophilic residues on
CaM responsible for this effect are originally
separated from each other on both domains of free
Ca21CaM by more than 50 but then form a
stable latch less than 5 apart in the Ca21
CaMpeptide complex41. These polar groups do not
contact the CaM-binding peptide directly, so they
might exert their effects on the intact protein kinase
by interacting with an area distinct from its CaMbinding domain. Indeed neutron- and X-rayscattering studies on the kinase domain of skeletalmuscle MLCK indicate that the CaM-binding
domain is displaced to one side of the enzyme by
the binding of Ca21CaM42. This event could expose
the substrate-binding site of the enzyme and indicates
how CaM might remove an inhibitory CaM-binding
domain away from the kinase domain, thus leading
to enzyme activation.
The preceding mechanistic studies show that the
regulation of enzymes by Ca21CaM is a highly ordered, cooperative and complementary process that
contributes to both the affinity and specificity for
targets. Another surprising outcome is the discovery
that the structures of Ca21CaMpeptide complexes
are relevant to their corresponding enzymes. However,
in addition to the obvious limitation in the use of
peptides to study mechanisms of enzyme activation, there are mounting indications that peptides
might not be entirely suitable for studying other
functions of the full-length target protein. For
example, Ca21 has a considerably higher affinity for
the CaMMLCK-peptide complex than for the corresponding CaMMLCK-enzyme complex19. Also,
mutations in the CaM-binding domain of smoothmuscle MLCK have a significantly greater effect on
CaM binding and activation than the same changes
within the context of the corresponding CaM-binding
peptide40. Differences in the Ca21-dependent interaction of CaM with either the CaM-binding peptide
of skeletal-muscle MLCK or the intact enzyme have
also been observed by small-angle scattering43. One
explanation for the adaptability and the higher
affinity exhibited by the shorter CaM-binding domains is the conformational flexibility inherent in
isolated peptides. By contrast, the relatively fixed
trends in CELL BIOLOGY (Vol. 10) August 2000
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Acknowledgements
Our research
cited in this
review was
funded by NIH
grants HD-07503
and GM-33976
to ARM. We
thank the
members of the
Means
laboratory for
stimulating
discussions.
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