Either remove one partition (not recommended)

Open Utilities -> Terminal

Enter diskutil list

Enter diskutil umountDisk /dev/diskX with diskX: disk identifier
of the CoreStorage volume (probably disk2)
Enter diskutil umountDisk /dev/diskY with diskY: disk identifier
of your internal drive (probably disk0) and
Enter gpt -r show /dev/diskY to get an overview and the index
number of Macintosh H(probably 2)
Enter gpt remove -i 2 /dev/diskY with diskY: disk identifier of
your internal drive (probably disk0)
Enter exit and quit Terminal
Or remove all partitions (recommended)
Open Utilities -> Terminal

Enter diskutil list

Enter diskutil umountDisk /dev/diskX with diskX: disk identifier
of the CoreStorage volume (probably disk2)
Enter diskutil umountDisk /dev/diskY with diskY: disk identifier
of your internal drive (probably disk0) and
Enter gpt destroy /dev/diskY with diskY: disk identifier of your
internal drive (probably disk0)
Enter exit and quit Terminal
Open Disk Utility and partition your internal drive
Either reinstalling OS X booted to IRM
Quit Disk Utility and open Restore OS X
Install and configure OS X

Download the latest OS X and upgrade to OS X El Capitan

attach your backup drive
Use the Migration Assistant to import your old users/data
Or reinstalling OS X booted to a bootable El Capitan
installer thumb drive (recommended)
Quit Disk Utility
attach your backup drive

Install OS X El Capitan
Use the Migration Assistant to import your old user(s)/data