Step 1:

Click on the below link and download the file "AutorunExterminator"

http://en.kioskea.net/download/download-11613-autorun-exterminator

Extract it --> Double-click on "AutorunExterminator" --> Plug your flash drive now.

This will remove the autorun.inf files from your flash drive and also from drives.

Step 2:

Click on "Start" -->Run --> type cmd and click on OK.

Here I assume your flash drive letter as G:

Enter this command.

attrib -h -r -s /s /d g:\*.*

You can copy the above command --> Right-click in the Command Prompt and

paste it.

Note : Don't forget to replace the letter g with your flash drive letter.
Now press "Enter".

Now check for your files in Flash Drive.

Step 3:

After that, download the Malwarebytes' Anti-Malware from the below link

http://en.kioskea.net/download/download-105-malwarebytes-anti-malware

Update it --> Perform "Full Scan"

Note : Default selected option is "Quick Scan".

Good Luck.