load("C:/Users/edgra/Documents/Work/Bu Ani/Data Amatan Bu Yuni.

xls")
library(relimp, pos=4)
Dataset <- sqlQuery(channel = 1, select * from [Sheet1$])
showData(Dataset, placement='-20+200', font=getRcmdr('logFont'),
maxwidth=80, maxheight=30)
Dataset$UL <- as.factor(Dataset$UL)
Dataset$VRTS <- as.factor(Dataset$VRTS)
library(agricolae)
anova2<-aov(lm(Dataset$BG ~ Dataset$VRTS, data=Dataset))
showData(Dataset, placement='-20+200', font=getRcmdr('logFont'),
maxwidth=80, maxheight=30)
anova1
AnovaModel.1 <- (lm(BG ~ UL*VRTS, data=Dataset))
Anova(AnovaModel.1)
tapply(Dataset$BG, list(UL=Dataset$UL, VRTS=Dataset$VRTS), mean,
na.rm=TRUE) # means
tapply(Dataset$BG, list(UL=Dataset$UL, VRTS=Dataset$VRTS), sd, na.rm=TRUE)
# std. deviations
tapply(Dataset$BG, list(UL=Dataset$UL, VRTS=Dataset$VRTS), function(x)
sum(!is.na(x))) # counts
help(LSD.test)
data(Dataset)
Dataset
ujilanjut<-LSD.test(anova2, "Dataset$VRTS")
ujilanjut
anova4<-aov(lm(Dataset$BG ~ Dataset$VRTS + Dataset$UL +Dataset$VRTS*Dataset$UL,
data=Dataset))
anova4
help(aov)
library(agricolae)
help(agricolae)
summary(anova4)

> load("C:/Users/edgra/Documents/Work/Bu Ani/Data Amatan Bu Yuni.xls")

> library(relimp, pos=4)
> Dataset <- sqlQuery(channel = 1, select * from [Sheet1$])
> showData(Dataset, placement='-20+200', font=getRcmdr('logFont'),
+ maxwidth=80, maxheight=30)
> Dataset$UL <- as.factor(Dataset$UL)
> Dataset$VRTS <- as.factor(Dataset$VRTS)
> library(agricolae)
> showData(Dataset, placement='-20+200', font=getRcmdr('logFont'),
+ maxwidth=80, maxheight=30)
> anova1<-anova(lm(Dataset$BG ~ Dataset$VRTS, data=Dataset))
> anova1
Analysis of Variance Table
Response: Dataset$BG
Df Sum Sq Mean Sq F value Pr(>F)
Dataset$VRTS 11 16663.7 1514.9 459828 < 2.2e-16 ***
Residuals 24 0.1 0.0
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
> AnovaModel.1 <- (lm(BG ~ UL*VRTS, data=Dataset))
> Anova(AnovaModel.1)
> tapply(Dataset$BG, list(UL=Dataset$UL, VRTS=Dataset$VRTS), mean,
+ na.rm=TRUE) # means
VRTS
UL 1 2 3 4 5 6 7 8 9 10 11 12
1 104.25 62.30 42.01 27.10 26.50 23.33 57.12 68.40 44.20 36.00 46.27 46.51
2 104.15 62.31 42.03 27.21 26.42 23.42 57.14 68.31 44.27 36.05 46.23 46.32
3 104.12 62.23 42.01 27.27 26.43 23.30 57.14 68.30 44.31 36.04 46.30 46.50
> tapply(Dataset$BG, list(UL=Dataset$UL, VRTS=Dataset$VRTS), sd, na.rm=TRUE)
+ # std. deviations
VRTS
UL 1 2 3 4 5 6 7 8 9 10 11 12
1 NA NA NA NA NA NA NA NA NA NA NA NA
2 NA NA NA NA NA NA NA NA NA NA NA NA
3 NA NA NA NA NA NA NA NA NA NA NA NA
> tapply(Dataset$BG, list(UL=Dataset$UL, VRTS=Dataset$VRTS), function(x)
+ sum(!is.na(x))) # counts
VRTS
UL 1 2 3 4 5 6 7 8 9 10 11 12
1 1 1 1 1 1 1 1 1 1 1 1 1
2 1 1 1 1 1 1 1 1 1 1 1 1
3 1 1 1 1 1 1 1 1 1 1 1 1
> help(LSD.test)
> data(Dataset)
> Dataset
VRTS UL BG BP BB BK R KA Brs Am Skr Bbt100
1 1 1 104.25 77.20 66.65 70 63.93 13.0 210 21.00 3.0 3.32
2 1 2 104.15 77.31 66.50 70 63.85 13.2 200 21.04 2.9 3.25
3 1 3 104.12 77.45 66.42 71 63.79 12.9 200 21.04 3.0 3.34
4 2 1 62.30 45.32 40.41 65 64.86 12.5 100 22.40 3.1 3.10
5 2 2 62.31 45.23 40.31 64 64.69 12.5 100 22.41 3.0 3.21
6 2 3 62.23 45.29 40.29 62 64.74 12.6 100 22.50 3.0 3.27
7 3 1 42.01 32.30 26.35 62 62.72 13.2 68 20.88 2.4 3.29
8 3 2 42.03 32.41 26.31 60 62.60 13.2 68 20.84 2.4 3.43
9 3 3 42.01 32.20 26.20 61 62.37 13.3 68 19.96 2.4 3.42
10 4 1 27.10 20.00 15.17 55 55.98 13.5 65 19.76 2.0 3.42
11 4 2 27.21 20.01 15.18 55 55.79 13.2 65 19.76 2.0 3.33
12 4 3 27.27 20.04 15.15 55 55.56 13.4 65 19.80 2.0 3.53
13 5 1 26.50 18.17 15.20 58 57.36 13.4 65 22.80 3.1 3.51
14 5 2 26.42 18.21 15.15 56 57.34 13.0 64 22.82 3.0 3.38
15 5 3 26.43 18.23 15.04 57 56.91 13.2 65 22.70 3.0 3.23
16 6 1 23.33 18.01 15.01 65 64.34 12.9 60 20.08 2.3 3.33
17 6 2 23.42 18.04 15.02 64 64.13 13.0 62 20.00 2.2 3.47
18 6 3 23.30 18.02 15.04 65 64.55 12.8 60 20.08 2.0 3.40
19 7 1 57.12 41.12 36.17 63 63.32 14.2 90 19.52 2.1 3.27
20 7 2 57.14 41.30 16.19 60 63.34 13.9 95 19.60 2.0 3.20
21 7 3 57.14 41.21 16.20 62 63.35 14.0 95 19.62 2.1 3.20
22 8 1 68.40 47.15 43.20 63 63.16 13.3 120 20.96 2.0 3.41
23 8 2 68.31 47.05 43.20 64 63.24 13.1 120 20.96 2.2 3.28
24 8 3 68.30 46.92 43.17 61 63.21 13.2 120 20.96 2.2 3.48
25 9 1 44.20 32.09 29.29 66 66.27 12.8 90 12.16 1.2 3.04
26 9 2 44.27 32.11 29.18 66 65.91 13.0 92 12.20 1.2 3.00
27 9 3 44.31 32.05 29.31 67 66.15 12.8 90 12.18 1.2 3.02
28 10 1 36.00 29.08 24.24 67 67.33 12.2 68 11.84 1.1 3.05
29 10 2 36.05 29.04 24.31 66 67.43 12.1 70 11.86 1.2 3.07
30 10 3 36.04 29.03 24.20 67 67.15 12.3 70 11.80 1.2 2.94
31 11 1 46.27 33.41 28.73 61 62.09 13.3 93 11.42 1.0 3.05
32 11 2 46.23 33.33 28.54 63 61.73 13.2 92 11.50 1.1 3.04
33 11 3 46.30 33.29 28.50 60 61.56 13.4 93 11.42 1.2 3.02
34 12 1 46.51 33.01 30.31 65 65.17 13.2 92 12.64 1.2 3.15
35 12 2 46.32 33.00 30.42 65 65.67 13.1 93 12.60 1.1 3.00
36 12 3 46.50 33.04 30.39 67 65.35 13.2 92 12.65 1.2 3.15
> ujilanjut<-LSD.test(anova1, "Dataset$VRTS", P.adj="bonferroni")
> ujilanjut<-LSD.test(anova1, "Dataset$VRTS", console=TRUE)
> anova2<-aov(lm(Dataset$BG ~ Dataset$VRTS, data=Dataset))

> ujilanjut<-LSD.test(anova2, "Dataset$VRTS")

> ujilanjut
$statistics
Mean CV MSerror LSD
48.66111 0.117953 0.003294444 0.0967239
$parameters
Df ntr t.value
24 12 2.063899
$means
Dataset$BG std r LCL UCL Min Max
1 104.17333 0.06806859 3 104.10494 104.24173 104.12 104.25
10 36.03000 0.02645751 3 35.96161 36.09839 36.00 36.05
11 46.26667 0.03511885 3 46.19827 46.33506 46.23 46.30
12 46.44333 0.10692677 3 46.37494 46.51173 46.32 46.51
2 62.28000 0.04358899 3 62.21161 62.34839 62.23 62.31
3 42.01667 0.01154701 3 41.94827 42.08506 42.01 42.03
4 27.19333 0.08621678 3 27.12494 27.26173 27.10 27.27
5 26.45000 0.04358899 3 26.38161 26.51839 26.42 26.50
6 23.35000 0.06244998 3 23.28161 23.41839 23.30 23.42
7 57.13333 0.01154701 3 57.06494 57.20173 57.12 57.14
8 68.33667 0.05507571 3 68.26827 68.40506 68.30 68.40
9 44.26000 0.05567764 3 44.19161 44.32839 44.20 44.31
$comparison
NULL
$groups
 trt means M
1 1 104.17333 a
2 8 68.33667 b
3 2 62.28000 c
4 7 57.13333 d
5 12 46.44333 e
6 11 46.26667 f
7 9 44.26000 g
8 3 42.01667 h
9 10 36.03000 i
10 4 27.19333 j
11 5 26.45000 k
12 6 23.35000 l

> anova3<-aov(lm(Dataset$BG ~ Dataset$VRTS Dataset$UL, data=Dataset))

> anova3
> help(aov)
> anova3<-aov(lm(Dataset$BG ~ Dataset$VRTS + Dataset$UL, data=Dataset))
> anova3
Call:
aov(formula = lm(Dataset$BG ~ Dataset$VRTS + Dataset$UL, data = Dataset))
Terms:
Dataset$VRTS Dataset$UL Residuals
Sum of Squares 16663.661 0.001 0.078
Deg. of Freedom 11 2 22
Residual standard error: 0.0596687
Estimated effects may be unbalanced
> anova3<-aov(lm(Dataset$BG ~ Dataset$VRTS Dataset$UL, data=Dataset))
> anova3
Call:
aov(formula = lm(Dataset$BG ~ Dataset$VRTS + Dataset$UL, data = Dataset))
Terms:
Dataset$VRTS Dataset$UL Residuals
Sum of Squares 16663.661 0.001 0.078
Deg. of Freedom 11 2 22
Residual standard error: 0.0596687
Estimated effects may be unbalanced
> anova3<-aov(lm(Dataset$BG ~ Dataset$VRTS* Dataset$UL, data=Dataset))
> anova3
Call:
aov(formula = lm(Dataset$BG ~ Dataset$VRTS * Dataset$UL, data = Dataset))
Terms:
Dataset$VRTS Dataset$UL Dataset$VRTS:Dataset$UL
Sum of Squares 16663.661 0.001 0.078
Deg. of Freedom 11 2 22
Estimated effects may be unbalanced
> anova3<-aov(lm(Dataset$BG ~ Dataset$VRTS * Dataset$UL, data=Dataset))
> anova3
Call:
aov(formula = lm(Dataset$BG ~ Dataset$VRTS * Dataset$UL, data = Dataset))
Terms:
Dataset$VRTS Dataset$UL Dataset$VRTS:Dataset$UL
Sum of Squares 16663.661 0.001 0.078
Deg. of Freedom 11 2 22
Estimated effects may be unbalanced
> anova4<-aov(lm(Dataset$BG ~ Dataset$VRTS * Dataset$UL, data=Dataset))
> anova4
Call:
aov(formula = lm(Dataset$BG ~ Dataset$VRTS * Dataset$UL, data = Dataset))
Terms:
Dataset$VRTS Dataset$UL Dataset$VRTS:Dataset$UL
Sum of Squares 16663.661 0.001 0.078
Deg. of Freedom 11 2 22
Estimated effects may be unbalanced
> library(agricolae)
> anova4<-aov(lm(Dataset$BG ~ Dataset$VRTS * Dataset$UL, data=Dataset))
> anova4
Call:
aov(formula = lm(Dataset$BG ~ Dataset$VRTS * Dataset$UL, data = Dataset))
Terms:
Dataset$VRTS Dataset$UL Dataset$VRTS:Dataset$UL
Sum of Squares 16663.661 0.001 0.078
Deg. of Freedom 11 2 22
Estimated effects may be unbalanced
> help(agricolae)
> summary(anova4)
Df Sum Sq Mean Sq
Dataset$VRTS 11 16664 1515
Dataset$UL 2 0 0
Dataset$VRTS:Dataset$UL 22 0 0
> anova4<-aov(lm(Dataset$BG ~ Dataset$VRTS + Dataset$UL, data=Dataset))
> anova4
Call:
aov(formula = lm(Dataset$BG ~ Dataset$VRTS + Dataset$UL, data = Dataset))
Terms:
Dataset$VRTS Dataset$UL Residuals
Sum of Squares 16663.661 0.001 0.078
Deg. of Freedom 11 2 22
Residual standard error: 0.0596687
Estimated effects may be unbalanced
> summary(anova4)
Df Sum Sq Mean Sq F value Pr(>F)
Dataset$VRTS 11 16664 1515 4.255e+05 <2e-16 ***
Dataset$UL 2 0 0 1.040e-01 0.902
Residuals 22 0 0
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
> anova4<-aov(lm(Dataset$BG ~ Dataset$VRTS + Dataset$UL +Dataset$VRTS*Dataset$UL
, data=Dataset))
> anova4
Call:
aov(formula = lm(Dataset$BG ~ Dataset$VRTS + Dataset$UL + Dataset$VRTS *
Dataset$UL, data = Dataset))
Terms:
Dataset$VRTS Dataset$UL Dataset$VRTS:Dataset$UL
Sum of Squares 16663.661 0.001 0.078
Deg. of Freedom 11 2 22
Estimated effects may be unbalanced
> summary(anova4)
Df Sum Sq Mean Sq
Dataset$VRTS 11 16664 1515
Dataset$UL 2 0 0
Dataset$VRTS:Dataset$UL 22 0 0