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COMMENTARIES

TM6SF2: Catch-22 and in others to cardiovascular dis- uniform abnormalities of serum lipids
ease.10 Determining why this occurs is or glycemic and anthropometric
in the Fight critical to making clinical recommen- traits.12 In particular, variants at the
Against dations based on personal rather than chromosome 19p13.11 locus associ-
population risk. ated with increased hepatic steatosis/
Nonalcoholic Although the exact cause of NAFLD NASH/brosis were also associated
Fatty Liver or NASH has not been elucidated, we with decreased serum LDL cholesterol
Disease and are now able to begin to understand and lower serum TGs,12,18,19 which
the genetic basis for the disease. was contrary to the usually observed
Cardiovascular NAFLD clusters in families,11 and its epidemiologic pattern of these traits.
Disease? heritability is estimated to be 26% Variants at 19p13.11 were not as-
27% for CT-measured hepatic stea- sociated signicantly with serum

N onalcoholic fatty liver disease


(NAFLD) is rapidly becoming
the most common cause of chronic
tosis.12 Genome-wide association
studies (GWAS) and candidate gene
studies have provided important in-
glucose or measures of insulin resis-
tance in the best powered analyses at
the time.12,18,19 Variants at PNPLA3
liver disease worldwide.1,2 NAFLD in- sights into the genetic contribution to and LYPLAL1 did not affect serum
cludes a spectrum of disease ranging NAFLD.13 The nonsynonymous single lipid or glycemic traits, whereas those
from the accumulation of fat in the nucleotide polymorphism (SNP), at GCKR and PPP1R3B were associated
liver (steatosis) to histologic evidence rs738409 (c.444 C>G, I148M) in with increased serum LDL cholesterol
of necroinammation (nonalcoholic patatin-like phospholipase domain- and lower serum glucose levels.12
steatohepatitis [NASH]), then brosis containing 3 (PNPLA3) was associated These results suggested a heteroge-
and cirrhosis, in the absence of exces- signicantly with 1H-magnetic reso- neous etiology to NAFLD and the
sive alcohol ingestion.2,3 Approxi- nance spectroscopy measured hepatic existence of multiple genetic meta-
mately one-third of the US population triglyceride (TG) content14 and has bolic disease subtypes that may re-
has radiologic evidence of NAFLD. subsequently been validated globally quire more precision treatment in the
Although the majority (70%90%) will as a major genetic determinant of not future.12
have relatively benign simple only steatosis, but also severity of Work from several groups has now
steatosis,46 NAFLD may progress to NASH, stage of hepatic brosis/ extended these ndings. It has recently
cirrhosis or hepatocellular carcinoma, cirrhosis, and occurrence of NAFLD- been reported that a nonsynonymous
and can lead to liver failure in the associated HCC.12,15,16 The largest genetic variant within a gene of un-
absence of lifestyle change or effective GWAS meta-analysis for NAFLD to known function called TM6SF2, trans-
pharmacological treatments.2,7 date, using 2.4 million SNPs imputed to membrane 6 superfamily member 2,
Although morbidity and mortality HapMap in 7176 individuals of Euro- (rs58542926 c.449 C>T) at the
from liver disease are increased pean ancestry, identied common 19p13.11 locus was associated with
greatly in patients with NAFLD, variants at 5 loci. These variants are in hepatic steatosis in 2,736 individuals
morbidity and mortality from cardio- or near the genes PNPLA3, GCKR, genotyped using a human exome
vascular disease is even more preva- LYPLAL1, and PPP1R3B, and a region chip.20 This variant is in strong linkage
lent in this population.8 NAFLD, a on chromosome 19 (19p13.11) that disequilibrium (r2 0.798) with vari-
complex trait inuenced by inter- contains multiple genes and has vari- ants in the chromosome 19p13.11
patient genetic variations and envi- ously been called NCAN/TM6SF2/ locus previously reported to be NAFLD
ronmental inuences, is widely CILP2/PBX4 in the literature.12 The risk factors,12 making it likely that the
considered to be the hepatic manifes- variants at most of these loci are new and old signals are the same.
tation of the metabolic syndrome.1,2 It also associated with NASH/brosis Indeed, conditional analyses indicate
correlates epidemiologically with the (all but those at PPP1R3B).12 Variants that TM6SF2 rs58542926 may be
presence of features of the metabolic at the PNPLA3 locus conferred the the causal variant driving the associa-
syndrome, which consists of having 3 strongest effect, predisposing to tion at this locus.20,21 The TM6SF2
of the following: impaired fasting advanced liver disease with an odds rs58542926 variant has subsequently
glucose, central obesity, dyslipidemia ratio (OR) of 3.26 (95% CI, 2.117.21), been associated with severity of
(low high-density lipoprotein choles- with the variants at the 19p13.11 NAFLD-associated hepatic brosis/
terol, high low-density lipoprotein locus being the second strongest at cirrhosis (OR, 1.88 [95% CI, 1.412.5]
[LDL], or both) and hypertension.8 1.65 (95% CI, 1.152.65) per mutant for advanced brosis per each copy of
There is substantial interpatient vari- allele.12 The PNPLA3 and chromosome the minor allele carried), independent
ation in which features of the meta- 19p13.11 locus also associated with of confounding factors including age,
bolic syndrome are exhibited, and histologic NASH/brosis in an inde- diabetes, obesity, or PNPLA3 genotype,
which clinical sequelae an individual pendent sample of bariatric surgery in a cohort of >1000 histologically
may develop. In some cases the meta- patients.17 Interestingly, NAFLD- characterized patients,21 consistent
bolic syndrome predisposes to NAFLD9 associated variants did not result in with previous associations at this

Gastroenterology 2015;148:679684
COMMENTARIES
locus.12 This association has itself been

pressure; HOMA-IR, homeostatic model assessment for insulin resistance; LDL-C, low-density lipoprotein cholesterol; MAF, minor allele frequency in Europeans; NA, not
assessed in the study referenced; NASH, nonalcoholic steatohepatitis; SBP, systolic blood pressure; T2D, type 2 diabetes; TC, total cholesterol; TG, triglycerides; [,
ALP, alkaline phosphatase; ALT, alanine aminotransferase; AST, aspartate transaminase; CAD/MI, coronary artery disease/myocardial infarction; DBP, diastolic blood
NASH/Fibrosis
validated independently21,22 and other
studies have also associated the
TM6SF2 variant with decreased levels
of serum LDL cholesterol and TG20,23

NA

NA

NA
[

[
(consistent with the earlier reports12).
Studies have also described associa-

ALP/ALT/AST
tions of the minor allele at this locus

NA/NA/NA

NA/NA/NA

NA/NA/NA

NA/NA/NA
with increased serum alanine trans-

NA/[/NA
aminase, aspartate transaminase,20

Y/[/[
and increased risk of diabetes,24 with
decreased serum alkaline phosphatase

Fatty
and lower risk of myocardial infarc-

liver

NA

NA

NA
tion,23 atherosclerosis, and cardiovas-

[
cular disease22 (Table 1).

TC

NA

NA

NA
Because the association signal in

Association With Other Traits

Y
the chromosome 19p13.11 region

TG

NA
covers >20 genes and the SNPs across

Y
this region are in high LD with one

LDL-C
another (highly correlated) and

NA
include both known (in TM6SF2, NCAN,

Y
CILP2) and yet to be discovered non-
HOMA-IR
synonymous SNPs, it remains to be
Table1.Association of Variants at chr 19p13.11 Locus With Manifestations of the Metabolic Syndrome

proven whether all of these pheno-


types are owing to 1 or possibly mul-
NSa

NSa

NA

NA
NA

NA
tiple correlated functional variants/
genes in the region. Toward this end,
Glucose
Fasting

several groups have started to carry


NSa

NSa

NSa

out functional experiments with the


NA

NA
NA

genes under the GWAS signal and their


variants to narrow down the causal
SBP

NSa
NA

NA

NA
NA

NA

gene(s) and variant(s). TM6SF2


rs58542926 c.449 C>T heterozygous
DBP

NSa

variant is a nonsynonymous change


NA

NA
NA

NA

NA

producing a glutamate to lysine amino


acid substitution at residue 167
CAD/MI

(E167K), with the glutamate being


highly conserved across mammals.20 In
NA

NA
NA

NA
Y

mice, overexpression of human wild-


T2D

type TM6SF2 in liver resulted in


NA

NA

NA

NA
[

higher total cholesterol, LDL choles-


Based on P value after correcting for multiple tests.

terol, TGs and lower high-density li-


rs58542926

Same SNP

Same SNP
Same SNP

poprotein cholesterol, whereas


LD (r2)

0.798
With

0.97

0.98

knockdown of mouse Tm6sf2 in liver


signicant increase; Y, signicant decrease.

resulted in decreased serum total


cholesterol.23 Because the E167K allele
results in lower total cholesterol in
exonic:TM6SF2:E167K

exonic:TM6SF2:E167K

exonic:TM6SF2:E167K

humans, these data suggest that the


SNP Annotation

exonic: NCAN:P92S
Gene: Protein

E167K mutation in TM6SF2 was a loss


intronic: SUGP1

intronic: SUGP1
Change

of function allele.23 Kozlitina et al20


showed that expression of TM6SF2
(E167K) protein is lower than wild
type, consistent with this being a loss
of function allele, and showed that
knockdown of mouse Tm6sf2 resulted
rs1040196919

rs1040196924

rs5854292623

rs5854292620

rs5854292621
Allele, MAF)

rs222860312

in increased liver lipid accumulation


(Minor
SNP

(T, 0.084)
(C, 0.09)

(C, 0.08)

and decreased serum TG and LDL.


(T, 0.07)

(T, 0.07)

(T, 0.12)

They also found that knockdown of


mouse Tm6sf2 resulted in decreased
a

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COMMENTARIES
very low-density lipoprotein (VLDL) TM6SF2, which is expressed more provide new insights into the mecha-
cholesterol secretion.20 In other inde- widely, may exert some of its effects nistic basis of progressive NAFLD, and
pendent work25 using confocal via its role in extrahepatic organs. the association between NAFLD and
microscopy, investigators observed TM6SF2 has highest expression levels cardiovascular disease. They suggest
localization of green uorescent pro- in the intestine, where alkaline that TM6SF2 is an important deter-
teintagged TM6SF2 to the endo- phosphatase is also expressed (in minant of clinical outcome across
plasmic reticulum in 2 human addition to the liver) and thus metabolic syndrome related end-
hepatoma cell lines. Additionally, TM6SF2 may inuence on serum organ damage. Indeed, current evi-
knockdown of TM6SF2 in both cell alkaline phosphatase via intestinal dence suggests that TM6SF2 may
lines resulted in reduced secretion of effects. The association between act as a switch with TM6SF2
TG-rich lipoproteins, apolipoprotein B, TM6SF2 rs58542926 and the NAFLD rs58542926 T-allele mediating hepat-
and increased cellular TG levels. At the phenotype spectrum from steatosis to ic retention of TG and cholesterol
subcellular level, a marked increase in advanced brosis/cirrhosis has now predisposing to NAFLD-brosis,
lipid droplet area, which could be been robustly demonstrated in several whereas C-allele carriage promotes
attributed to increases in both the large independent cohorts12,2022,25; VLDL excretion, protecting the liver at
number and average size of lipid however, 2 studies1 from China27 the expense of increased risk of
droplets, was reported. Conversely, and 1 from South America28have atherosclerosis and cardiovascular
overexpression of TM6SF2 caused a been unable to replicate these associ- disease (Figure 1). Thus, although in
decrease in the number and average ations. This may, in part, be owing to the general population, NAFLD is
size of lipid droplets.25 In parallel ex- the generally low minor allele fre- associated with an increased risk of
periments, Kozlitina et al20 also quency of NAFLD associating variants cardiovascular disease, these can
observed an increase in the size and in the 19p13.11 locus and interethnic become dissociated: individuals car-
number of lipid droplets in the livers of variations in their frequency of car- rying the minor (T) allele of TM6SF2
mice after knockdown of Tm6sf2. riage. Specically, the minor allele at rs58542926 (167K) may be prone to
These results suggest a role for rs58542926 (T), has a frequency of experience liver-related rather than
TM6SF2 in regulating the supply of 0.07 in Europeans, 0.04 in Hispanics, cardiovascular morbidity and mortal-
lipids for the synthesis of TG-rich li- and 0.02 in African Americans.29 Thus, ity.2,30,31 Corroborating this nding,
poproteins. Finally, RNAi knockdown the liver disease promoting allele at even though only about 0.5% of in-
of both TM6SF2 and NCAN in HeLa TM6SF2 will affect more individuals of dividuals of European ancestry in the
cells resulted in increased free choles- European ancestry than Hispanic or population are homozygous for the
terol,26 suggesting that the product of African ancestry. Inadequate statistical minor allele of TM6SF2, 1.5% of in-
>1 gene in this region may be involved power to detect an effect on histologic dividuals selected for having histo-
in hepatic lipid handling. markers of disease progression is a logic NASH/brosis have this
Not all the studies have unequivo- particular issue in the South American genotype, suggesting that carrying 2
cal ndings. Neither Kozlitina et al20 study,28 where only 226 NAFLD cases copies of the T allele predisposes to
nor Holmen et al23 observed changes with histologically mild disease were developing advanced liver disease.21
with serum alkaline phosphatase in the included. Of these cases, only 130 had In contrast, carriage of the C-allele is
mouse experiments described, con- anything more than bland steatosis, associated with multiple classic char-
trary to the results observed in but these cases exhibited a mean acteristics of the metabolic syndrome,
humans. Kozlitina et al20 reported brosis stage of only 1.4 out of 4, including dyslipidemia and cardiovas-
increased accumulation of hepatic TGs further degrading the sensitivity of the cular disease.23 Thus, carrying the T
in Tm6sf2 knockdown mice, whereas study. It is, therefore, not surprising allele protects against development of
Holmen et al23 found no evidence of TG that the authors were unable to detect dyslipidemia and cardiovascular dis-
accumulation in the livers of Tm6sf2 an association with features of steato- ease.23 Whether the effects of variants
knockdown mice. Kozlitina et al used hepatitis or brosis, whereas groups at the 167 position will be strong
adeno-associated virus knockdown, with larger cohorts have been enough to overshadow the effects of
whereas Holmen used adenovirus successful.12,21,22 many other environmental or genetic
knockdown of TM6SF2 in liver in The above functional studies variants on the risk of liver and car-
C57BL/6J mice. These differences in in vivo20,23 and in vitro20,23,25 suggest diovascular disease at an individual
hepatic steatosis may be owing to dif- that the TM6SF2 gene affects hepatic level, and so merit distinct medical
ferences between humans and mice, to lipid efux, with its deletion or mu- recommendations for patients car-
the short duration of gene-altering tation resulting in a reduction of li- rying this allele, remains to be deter-
studies in mouse livers, or to species- poprotein secretion (VLDL, TG, and mined. Nevertheless, studying the
or tissue-specic effects of TM6SF2. apolipoprotein B) coincident with effects of NAFLD-associated human
Targeting just the liver for knock- increased hepatocellular lipid droplet genetic variants on related metabolic
down/overexpression in mice, for size and TG content. The 19p13.11 traits promises to teach us much
example, may result in phenotypes locus overall, and the TM6SF2 about how these traits interrelate to
related to just this organ, whereas rs58542926 variant in particular, one another pathophysiologically.

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COMMENTARIES

Figure 1.Effects of TM6SF2. TM6SF2


plays a role in VLDL export from liver to
serum which results in increased serum
lipids and myocardial infarction, and
decreased risk of liver steatosis. chol,
cholesterol; LDL, low-density lipoprotein
cholesterol; IHTG, intrahepatic triglycer-
ide; NASH, nonalcoholic steatohepatitis;
TG, triglyceride; VLDL, very low-density
lipoprotein.

Although we have learned many whole body, hepatic, or adipose tissue recommendations for disease treat-
things already from these discoveries, insulin sensitivity.31 Further research, ment in the future. Indeed, although
some interesting questions remain. perhaps utilizing stable global and genetic testing for common diseases is
The T allele of TM6SF2 rs58542926 tissue-specic knockouts of TM6SF2 in currently limited, this may change
has been associated with decreased mice, may help to clarify these ques- with a better understanding of how
alkaline phosphatase levels, but how tions. Even though there is evidence this information can be used to inform
the E167K change in TM6SF2 actually that the E167K mutation of TM6SF2 patient care.
results in this biochemical effect re- results in less VLDL in serum, the
mains to be determined. Interestingly, exact mechanism by which this occurs BRATATI KAHALI
knocking down hepatic TM6SF2 is not known. Because VLDL forma- University of Michigan
expression did not result in changes in tion requires a multistep process Ann Arbor, Michigan
serum alkaline phosphatase.20 Because where TGs are combined with apoli- YANG-LIN LIU
TM6SF2 is expressed not only in liver poproteins that are then secreted, ANN K. DALY
but also in intestine where alkaline altered, and eventually taken up again CHRISTOPHER P. DAY
phosphatase is also present at high by the liver as VLDL remnants, how if QUENTIN M. ANSTEE
levels, the authors suggest that intes- at all this cycle is disrupted by the Newcastle University
tine may be where the E167K change E167K variant at TM6SF2 remains Newcastle-upon-Tyne, UK
may exert its effect to cause lower to be tested. Because chylomicron
ELIZABETH K. SPELIOTES
levels of alkaline phosphatase.20 This assembly and circulation in intestine
University of Michigan
theory remains to be tested. Another parallels VLDL assembly and circula-
Ann Arbor, Michigan
unresolved question relates to the role tion in liver and because TM6SF2 is
of TM6SF2 in the development of type also expressed in intestine, it remains
2 diabetes mellitus. Although one large to be determined whether chylomi-
meta-analysis suggests that TM6SF2 cron biology is also affected by the References
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sensitivity is currently lacking, with metabolic disease develops so that we 2. Anstee QM, Targher G, Day CP.
clamp studies nding no reduction in can hopefully better tailor clinical Progression of NAFLD to diabetes

682
COMMENTARIES
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COMMENTARIES
William Leech Building, Framlington Place, and the University of Michigan Internal Medicine
Reprint requests Newcastle-upon-Tyne, NE2 4HH, UK. e-mail: Department, Division of Gastroenterology, and
Address requests for reprints to: Elizabeth K. quentin.anstee@newcastle.ac.uk Biological Sciences Scholars Program. Quentin
Speliotes, MD, PhD, MPH, Division of M. Anstee was supported by a Clinical Senior
Gastroenterology and Hepatology, University of Conicts of interest Lectureship Award from the Higher Education
Michigan Health System, 3912 Taubman Center, The authors disclose no conicts. Funding Council for England (HEFCE).
1500 E. Medical Center Drive, SPC 5362, Ann
Arbor, MI 48109-5362. e-mail: espeliot@med.
umich.edu; Quentin M. Anstee, BSc, MBBS, PhD, Funding 2015 by the AGA Institute
MRCP(UK), Institute of Cellular Medicine, The Bratati Kahali and Elizabeth K. Speliotes were 0016-5085/$36.00
Medical School, Newcastle University, 4th Floor, supported by the Doris Duke Medical Foundation, http://dx.doi.org/10.1053/j.gastro.2015.01.038

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