Professional Documents
Culture Documents
Biochemical Engineering
CHE F421
Dr. Amit Jain
BITS Pilani Asst. Prof., Dept. of Chemical Engg.
Pilani Campus
BITS Pilani – Pilani Campus
BITS Pilani
Pilani Campus
Lecture 2 - 4
Basics of Microbiology
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Presentation Outline
• Diversity of Microorganisms
• Naming and Taxonomy of Cells
• Procaryotes
• Eucaryotes
• Viruses
• Cell Structure - major classes of compounds
• Culture Media Components
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Dr Amit Jain, Asst. Prof., Dept. of Chemical Engg., BITS Pilani
• pH
• Grows best near neutral pH Neutrophiles or Mesophiles
• Grows well at pH of 1 to 2 Acidophiles
• Grows well at pH as high as 9 Alkaliphile
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• Nutrient Availability:
• Most cells require Organic and Inorganic nutrients to grow and
survive.
• Cyanobacteria (formerly called blue-green algae) can grow in the
absence of key nutrients
• Can convert CO2 from air into organic cellular molecules.
• Can also convert N2 into NH3 for essential cellular material.
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Protist
Kingdom
Procaryotes Eucaryotes
Blue-green
Bacteria Fungi Algae Protozoa
algae
Molds Yeast
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Primary Subdivision of
Cellular Organisms (Table 2.1)
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Primary Subdivision of
Cellular Organisms (Table 2.2)
Group Cell Properties Constituent groups
Structure
Eucaryotes Eucaryotic Multicellular; extensive Plants (seed plants,
differentiation of cells and ferns, mosses)
tissues Animals (vertebrates,
Unicellular, coenocytic or invertebrates)
mycellial; little or no tissue Protist (algae, fungi,
differentiation protozoa)
Eubacteria Procaryotic Cell chemistry similar to Most bacteria
eucaryotes
Archae- Procaryotic Distinctive cell chemistry Methanogens,
bacteria halophiles, thermo-
acidophiles
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Viruses
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Replication of Virulent
Bacteriophage
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Viruses
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Procaryotes
• Mostly, procaryotes sizes vary from 0.5 to 3 µm.
• Procaryotic cells grows rapidly (t1/2 =~ 30 min to few hrs)
Eubacteria:
• Can be divided into several different groups.
• One distinction is based on gram stain test.
• Other, based on cellular nutrition and energy metabolism.
• Cyanobacteria (blue-green algae) have chlorophyll and fix CO2
into sugars.
• Anoxygenic photosynthetic bacteria (the purple and green
bacteria) have light gathering pigment bacteriochlorophyll.
• Unlike true photosynthesis they do not obtain reducing power from
the splitting of water
• Do not produce oxygen .
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A. Cell Envelope
Outer membrane: 10 - 20 nm thick, a protein-
polysaccharide lipid complex
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B. Cytoplasm
Nuclear material: a single chromosome of DNA with no
nuclear membrane.
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Eucaryotic Cells
Cell wall: animal cells have no cell wall (fragile). Plant cells
have a wall containing peptidoglycan,
polysaccharides and cellulose.
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Eucaryotic Cells
B. Cytoplasm
Nucleus: chromosomes surrounded by a membrane.
Mitochondria: 1-3 µm cylindrical bodies. The powerhouses
of the cell where respiration and oxidative
phosphorylation (ADPATP) occur.
Endoplasmic reticulum: Membrane complex extending from
cell membrane, sites of protein synthesis and
modification.
Lysosomes: Small membrane-bound particles that contain
digestive enzymes.
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Dr Amit Jain, Asst. Prof., Dept. of Chemical Engg., BITS Pilani
Eucaryotic Cells
B. Cytoplasm (continued)
Golgi bodies: small particles composed of membrane
aggregates responsible for excretion of proteins and
other products.
Vacuoles: membrane bound organelles of plant cells
responsible for nutrient digestion, osmotic
regulation, and waste storage.
Chloroplasts: chlorophyll-containing structures that are
responsible for photosynthesis in plants and algae.
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Yeast
Fungi
Molds
Yeasts:
• 5-10 µm in size;
• spherical, cylindrical or oval
in shape;
• most common yeast used
in industry is
Saccharomyces cerevisiae,
which is used for:
– Baker’s yeast production
under aerobic conditions, and
– Alcohol production under
anaerobic conditions.
Fungi
Molds:
• Filamentous fungi with a
mycelial structure.
• Mycelium is a highly
branched system of tubes
that contain mobile
cytoplasm with many
nuclei.
• Molds are used for
production of citric acid and
many antibiotics.
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Algae
• Single or multi-celled organisms that
contain chloroplasts and perform
photosynthesis. Size is 10 - 30 µm.
• Diatoms contain silica in their cell
walls and are used as filter aids in
industry.
• Some algae (chloreila, spirullina) are
used in the wastewater treatment
industry with simultaneous
production of single-cell protein.
• Certain gelling agents such as agar
and alginic acid are obtained from
marine algae and seaweed.
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Protozoa
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Cell Construction
Cells are composed of:
Biopolymers (major structural elements of living cell)
Proteins - cell wall, cytoplasm as enzyme
Nucleic acids - cell nucleus as DNA
Polysaccharides - cell wall
Lipids - cell wall
Storage materials - in cytoplasm
(Fats, polyhydroxybutyrate, glycogen)
Inorganic salts or metabolites
NH4+, PO43-, K+, Ca2+, Na+, SO42-
Other intermediates and vitamins
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Cell Composition
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Cell Construction
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Isoelectric point
pH at which amino acids have no net charge
(depends on the R groups)
point, at which amino acid does not migrate under an
electric field
significant for protein purification
Proteins (c/d conjugated proteins) may consists of
organic and/or inorganic components (c/d prosthetic
groups) other than amino acids.
Ex. Hemoglobin – contains four heme groups (iron
containing organometallic complexes)
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Peptide Bond
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• Primary structure
• Sequence of amino acids
• Secondary structure
• These are formed by hydrogen bonding between amino
acid side chains and formation of α-helix or β-sheet
• Tertiary structure
• 3-dimensional structure of the protein, including an
active site (in case of enzyme), disulfide bonds.
• Quaternary structure
• if the protein contains more than one polypeptide chain
(or subunit) the collective structure is the quaternary
structure.
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Protein Structure
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nucleotide
*Ribose in RNA
Deoxyribose in DNA
Ribose
Deoxyribose
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NITROGEN BASES
* Thymine in DNA
**Uracil in RNA
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SECTION OF RNA
Backbone of
RNA consists of pentoses
and phosphate groups.
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DNA Replication
• DNA in the chromosomes replicates itself every
cell division
• Maintains correct genetic information
• Two strands of DNA unwind
• Each strand acts like a template
• New bases pair with their complementary base
• Two double helixes form that are copies of
original DNA
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DNA Replication
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RNA Structure
• Most RNA molecules have secondary structure,
consisting of stem & loop domains.
• Double helical stem domains arise from base
pairing between complementary stretches of
bases within the same strand.
• Loop domains occur due to lack of
complementarity or the presence of modified
bases prevents base pairing.
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// Thanks //
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Cell Nutrients
Micronutrients Fe, Zn, Mn, Cu, Co, Mo, Ca, Na, Cl, Ni,
Se, and others
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Growth Media
• Defined
• are very specific recipes in which certain ingredients must be
present in specific amounts.
• Complex
• Complex media are composed of partially digested yeast, beef,
soy and additional proteins, in which the exact concentration and
composition is unknown.
• Selective
• Selective media contain ingredients that inhibit the growth of
certain types of bacteria and/or encourage the growth of others
• Differential
• Differential culture media are formulated to display a color
change when the bacteria growing metabolize a certain
ingredient.
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Story of Penicillin
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History of Penicillin
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Penicillin F
Penicillin G
Enzymatic process
Protein Engineering
Penicillin nucleus
(6-APA)
Amoxicillin
Ampicillin Flucloxacillin
Dicloxacillin
Methicillin Carbenicillin
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