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Microbial Pathogenesis 99 (2016) 119e122

Contents lists available at ScienceDirect

Microbial Pathogenesis
journal homepage: www.elsevier.com/locate/micpath

Characterization of virulence factors, antimicrobial resistance pattern


and clonal complexes of group B streptococci isolated from neonates
Mohammad Emaneini a, Fereshteh Jabalameli a, Akbar Mirsalehian a, Amir Ghasemi b,
Reza Beigverdi a, *
a
Department of Microbiology, School of Medicine, Tehran University of Medical Sciences, Tehran, Iran
b
Department of Microbiology and Immunology, Faculty of Medicine, Kashan University of Medical Sciences, Kashan, Iran

a r t i c l e i n f o a b s t r a c t

Article history: Between January and December 2013, swab samples were taken for the throat and external ear canals of
Received 8 March 2016 1037 newborns for screening of Group B Streptococcus (GBS or S. agalactiae). Isolates were analyzed form
Received in revised form Multilocus sequence typing (MLST), capsular type, virulence genes and antibiotic susceptibility. The
16 July 2016
MLST analysis of 19 GBS isolates showed 8 sequence types (STs). Overall the most common STs were ST19
Accepted 18 August 2016
Available online 20 August 2016
and ST28. Other STs were ST1, ST4, ST8, ST12, ST335 and ST734 (a new ST). The most common clonal
complexes (CCs) were CC19 (68.4%) and CC10 (21%). The scpB, hlyB and bca virulence genes were detected
in all STS, while the bac gene was predominant in ST12 with capsular type (CT) Ib. The IS1548 and the rib
Keywords:
GBS
genes were particularly prevalent in CTIII and were detected in isolates belong to ST19, ST335 and ST734
CC19 and were grouped in CC19. All isolates were susceptible to penicillin, vancomycin, linezolid and
Neonates quinupristin-dalfopristin. Resistance to tetracycline was observed in all 19 (100%) strains and was
Resistance correlated with presence of the tetM gene except for one isolate with ST12. All the ST8 and ST12 isolates
Virulence gene were resistant to macrolide carrying two resistance genes; the ermTR and the ermB, respectively. The
results of this study showed that the CC19 was a major clone in the neonatal intensive care unit (NICU) of
Imam Khomeini hospital which can cause severe infections in susceptible neonates (particularly in
premature infants). As a result, an intensive infection control policy is needed to prevent the spread of
this clone.
© 2016 Elsevier Ltd. All rights reserved.

1. Introduction bacteremia are more common in LOD [3,4]. In order to understand


the population structure of GBS, a variety of techniques have been
Group B Streptococcus (GBS or S. agalactiae) is known as a developed among which multilocus sequence typing (MLST) was
leading cause of neonatal sepsis and meningitis [1,2]. It is estimated introduced as the standard approach for typing [5]. MLST of GBS
that 10e30% of pregnant women are rectovaginal colonized by GBS isolates from different countries have shown that only limited
and maternal carriage is the major source of neonatal infections [3]. numbers of clonal complexes (CCs) including CC1, CC10, CC17, CC19
In the absence of any intervention, between 1 and 2% of neonates and CC23 were associated with colonizing or invasive isolates [6,7].
born from GBS-colonized mothers develop severe diseases [3]. Among these CCs, CC17 is a hypervirulent clone, mostly associated
Neonatal disease results from vertical transmission from mothers with invasive disease in neonate, whereas CC19 causes invasive
to neonates during childbirth or via horizontal transfer by nursery diseases among either neonates or adults [8,9]. However, more
personnel [4]. GBS infections are separated into Early-Onset Dis- recent studies have shown that CC1, CC19 and CC23 were respon-
ease (EOD) occurring in newborns 0e6 days of age and Late-Onset sible for a high proportion of colonizing isolates [5,10]. Several
Disease (LOD) occurring in newborns 7e90 days of age [4]. Sepsis studies have revealed that CC17 is relatively a homogenous group of
and pneumonia are more common in EOD, while meningitis and capsular type (CT) III isolates and other CCs are heterogeneous
groups which express different CTs [11,12]. The polysaccharide
capsule is the most important virulence factor and, based on the
* Corresponding author. Department of Microbiology, School of Medicine, Tehran differences in the structure of surface polysaccharides, 10 CTs (Ia, Ib,
University of Medical Sciences, 100 Poursina St., Keshavarz Blvd., Tehran, Iran. IIeIX) have been described [13,14]. Moreover, GBS has several
E-mail addresses: r-beigverdi@tums.ac.ir, rbeigverdi@gmail.com (R. Beigverdi).

http://dx.doi.org/10.1016/j.micpath.2016.08.016
0882-4010/© 2016 Elsevier Ltd. All rights reserved.
120 M. Emaneini et al. / Microbial Pathogenesis 99 (2016) 119e122

mobile genetic elements (MGEs) in the genome, among which 2.7. MLST
GBSi1 and IS1548 can serve as genetic markers for lineages CC17
and CC19, respectively [15]. There are several reports from different MLST was carried out as described by Jones et al. [19]. Briefly, 7
areas of Iran on the prevalence of GBS among pregnant women housekeeping genes (adhP, atr, glcK, glnA, pheS, sdhA, tkt) were
[16,17]; however, to our knowledge no data exist on the molecular amplified by PCR and were sequenced in both directions by Mac-
characteristics of GBS strains isolated from neonates. The goal of rogen Inc. (Korea). The unique sequence of each gene was then
current study was to determine phenotypic and genotypic char- uploaded to the GBS database at http://pubmlst.org/sagalactiae/ to
acteristics of GBS isolated from neonates in Tehran, Iran. provide a unique allele number, and the combination of the allele
numbers of the seven loci was given a sequence type (ST). New
2. Methods allelic and ST numbers were confirmed by the MLST website
curator. The eBURST v3 software (http://eburst.mlst.net/) was
2.1. Patients sampling applied used to determine the relationships between isolates and
isolates grouping to group isolates into CCs based on five out of
Between January and December 2013, swab samples were taken seven shared alleles, otherwise, an ST was considered as singleton.
from the throat and external ear canals of 1037 newborns that did
not develop EOD or LOD, and were hospitalized in the neonatal 3. Results
intensive care unit (NICU) of Imam Khomeini hospital, Tehran-Iran
due to various clinical conditions. Sample processing was per- Of the 1037 studied neonates, 19 (2%) were found to be colo-
formed according to the recommendations of the Centers of Dis- nized with GBS. The phenotypic and genotypic characteristics of
ease Control and Prevention (CDC) guidelines [3]. GBS isolates are shown in Table 1. The MLST analysis of 19 GBS
isolates showed 8 STs. Overall the most common STs were ST19
2.2. Bacterial strains (34.6%; 6/19), followed by ST28 (21%; 4/19), ST335 (10.5%; 2/19),
ST8 (10.5%; 2/19) and ST12 (10.5%; 2/19). Other STs, including ST1,
Briefly, after sampling, swabs were inserted directly into Todd- ST4, and ST734 (a new ST) were represented by a single isolate.
Hewitt broth with 8 mg/ml gentamicin and 15 mg/ml nalidixic acid Using eBURST, the STs were grouped in three CCs and one singleton.
and were transferred to the microbiology laboratory. After over- The most common CC was CC19 (68.4%, 13/19). The most common
night incubation at 35  C, the incubated broth was then sub CT was type III, found in 52.6% of isolates, followed by type II
cultured on 5% sheep blood agar (SBA) for 18e24 h at 35  C with 5% (31.6%), Ib (10.5%), and V (5.2%). No strains of CTIa, IV, VIeVIII were
CO2. Presumptive GBS colonies on the SBA plate were identified to identified. All isolates harbored the scpB, hlyB, and bca virulence
the species level by a combination of standard tests [13]. To confirm genes, whereas the rib, IS1548 and bac genes were detected in
the identity of isolate as GBS, the dltS gene was amplified by po- 73.7%, 47.4% and 10.5% of the isolates, respectively. The GBSi1 was
lymerase chain reaction (PCR) [13]. not detected. The scpB, hlyB and bca virulence genes were detected
in STS, while the bac gene was predominant in ST12 with CTIb. The
2.3. Ethical approval IS1548 and the rib genes were particularly prevalent in CTIII and
were detected in isolates belong to ST19, ST335 and ST734 and were
The study was approved by the Ethics Committee of Tehran grouped in CC19.
University of Medical Sciences. All isolates were susceptible to penicillin, vancomycin, linezolid
and quinupristin-dalfopristin. Resistance to erythromycin and
2.4. Antimicrobial susceptibility testing clindamycin were found in 5 (26.3%) and 6 (31.6%) isolates
respectively. Considering the CC and antibiotic susceptibility, the
Antibiotic susceptibilities were determined against clindamycin CC10 revealed the highest resistance rate to erythromycin and
(2 mg), vancomycin (30 mg), erythromycin (15 mg), linezolid (30 mg), clindamycin. Resistance to tetracycline was observed in all 19
penicillin (10 units), quinupristin-dalfopristin (synercid; 15 mg) and (100%) strains and was correlated with presence of the tetM gene
tetracycline (30 mg) using disc diffusion method according to the except for one isolate with ST12. All the ST8 and ST12 isolates were
Clinical and Laboratory Standards Institute (CLSI) guidelines [18]. resistant to macrolide carrying two resistance genes; the ermTR and
Antibiotic discs were purchased from Mast Company, UK. the ermB, respectively. Of 19 studied isolates, 14 isolates with 6
various STs showed one resistant genotype while the other 5 iso-
2.5. DNA extraction lates, consisted of 4 STs, revealed two resistant genotypes (Table 1).
Regarding tetracycline and macrolide resistant genes, 18 (98%) had
For DNA isolation, the bacterial DNA extraction kit (Gene All tetM, 4 (21%) and 2 (10.5%) had ermTR and ermB gene respectively.
Exgene™ Cell SV) was used according to the manufacturer's pro- None of the isolates were positive for ermA, ermC, mefA, linB, tetL,
tocol (Gene ALL, Seoul, Korea). All DNA preparations were stored at tetK and tetO in the PCR assay.
4  C until they were used.
4. Discussion
2.6. Detection of antimicrobial resistance, virulence and capsular
genes Our investigation revealed that the most prevalent STs in the
studied neonatal in intensive care units were ST-19, ST-28, ST-335,
The genes encoding resistance to the macrolides and lincosa- ST-12 and ST-8. The majority of STs recognized in this study have
mides (ermA, ermB, ermC, ermTR, mefA and linB), tetracyclines (tetM, also been reported previously as common STs for strains isolated
tetL, tetK and tetO), virulence factors (bca, bac, rib, hylB and scpB) from neonatal and/or adult infections [9,11,20]; however, despite
and mobile genetic elements (IS1548 and GBSi1) were investigated the small number of strains, we found one new ST (ST-734) that was
by PCR as described previously and validated using the control present in the MLST database. Associations between CT and STs
strains [13]. The identification of CTs (Ia, Ib, IIeVIII) of all GBS iso- have been previously reported by many authors [9,11,19]. The
lates were carried out by multiplex PCR assay as previously number of strains examined in our study was too small to confirm
described [13]. the association between CTs and STs. However, our results suggest
M. Emaneini et al. / Microbial Pathogenesis 99 (2016) 119e122 121

Table 1
The molecular characteristics, antimicrobial resistance and virulence gene profiles of GBS isolates.

Isolate No Source Resistance pattern Resistance gene Virulence gene Capsular type ST CC*

1 Ear T¥ tetM scpB, hlyB,bca V 1 1


2 Throat T, CD, E tetM, ermTR scpB, hlyB,bca II 8 10
3 Ear T, CD, E tetM, ermTR scpB, hlyB,bca II 8
4 Throat T, CD, E tetM, ermB scpB, hlyB,bca, bac Ib 12
5 Throat T, CD, E ermB scpB, hlyB,bca, bac Ib 12
6 Throat T tetM scpB, hlyB, IS1548, rib,bca III 19 19
7 Ear T tetM scpB, hlyB, IS1548, rib,bca III 19
8 Ear T, CD, E tetM, ermTR scpB, hlyB, IS1548, rib,bca III 19
9 Throat T tetM scpB, hlyB, IS1548, rib,bca III 19
10 Ear T tetM scpB, hlyB, IS1548, rib,bca III 19
11 Ear T tetM scpB, hlyB, IS1548, rib,bca III 19
12 Ear T tetM scpB, hlyB, IS1548, rib,bca III 335
13 Ear T tetM scpB, hlyB, IS1548, rib,bca III 335
14 Throat T tetM scpB, hlyB, rib,bca II 28
15 Ear T tetM scpB, hlyB, rib,bca II 28
16 Ear T tetM scpB, hlyB, rib,bca II 28
17 Throat T tetM scpB, hlyB, rib,bca II 28
18 Ear T tetM scpB, hlyB, IS1548, rib,bca III 734
19 Throat T, CD tetM, ermTR scpB, hlyB, rib,bca III 4 Singleton
¥
T:Tetracycline, CD:Clindamycin, E: Erythromycin, *CC:Clonal Complex, ST: Sequence Type.

that there is a correlation between CTIII with ST-19 and CTII with treatment of GBS infections is suitable; however, several studies
ST-28 [9,21]. In contrast to the study of Usein et al. [12] our data did have demonstrated the reduced effect of penicillin against GBS
not support any association between CTV with ST-19. Results of the infections [30,31]. In our study, all GBS isolates were resistant to
current study supports the idea that strains with the same ST could tetracycline which was slightly higher than reports from Tunisia
belong to different CTS [5,19,20]. It has been suggested that hori- (97.3%) and Egypt (98%) [32,33]. The tetM gene was the most
zontal transfer of capsular genes may occur in GBS population common tetracycline resistance gene in this population. These
[11,19]. We observed that strains isolated from the throat mostly finding is in agreement with other studies [32e34]. In the current
belonged to the STs 8 and 12 suggesting that throat may be an study, high rates of resistance were seen to both erythromycin and
important portal of entry for invasive GBS strains; however, due to clindamycin (26.3% and 31.6%, respectively). Several studies
our small sample size, this issue requires confirmation by further revealed that macrolide resistance rates vary greatly among
investigations including larger numbers of throat carriage strains. different parts of the world [32e35], which may reflect differences
In the present study, seven STs were clustered in three CCs, namely, in doses and dosing schedules used, differences in the public health
CC1, CC10 and CC19 among them the CC19 was the predominant CC. policies and spread of particular clones [21,34,36,37]. The most
Our findings support the data published by Fluegge et al. in which prevalent gene encoding macrolide resistance was ermTR (21%)
the CC19 [50% (23/46)] was more frequent among colonizing followed by ermB (15.8%). These results are similar to those from
neonatal strains [10]. On the other hand, Morozumi et al. reported the USA and Canada [38,39]. Similar to previous reports, combi-
that CC19 has been mostly isolated from neonates with invasive nations of macrolide resistance genes were not observed in this
diseases [9]. In the current study, similar to reports from Italy and study [26,33,40]. We observed the coexistence of erythromycin and
France, all CC19 isolates were resistant to tetracycline and harbored tetracycline resistance genes among our GBS isolates that was in
the tetM gene and approximately 70% of these isolates had capsular accordance with previous reports by Hraoui and Shabayek et al.
types III and carried the rib and IS1548 elements [15,22]. Similar to [32,33]. Acquisition of resistance genes to erythromycin and
different reports, our finding showed that IS1548 serves a genetic tetracycline is associated with the presence of mobile elements
marker for CC19 of CTIII isolates [11,15]. Dissemination of the CC19 such as transposons, conjugative transposons, plasmid and inte-
in many regions including United States, Europe, Africa and Asia gron [13]. All of the studied GBS isolates in the current study carried
may show that the CC19 is an international clone distributed the scpB, hlyB, bca genes which is in accordance with results of our
worldwide [5,9,11,20,23]. In this study, the majorities of macrolide- prior study in pregnant women in which we identified that 97% of
resistant isolates were CTIb and CTII, ermTR and ermB positive and isolates harbored these genes [13]; however, it was higher than
belonged to the CC10. However this is not constant, for example similar reports from Malaysia and Kuwait [41,42]. This variation
Ryu et al. reported that CC1 was the predominant clone among may be related to the geographical differences. In agreement with
erythromycin-resistant in Korea [24] and Gherardi et al. observed other studies [43,44], a correlation between CTs and virulence
that CTV harboring ermB and belonged to the CC1 was the major genes was found, namely, rib with CTIII and bac with CTIb. In the
clone among erythromycin-resistant in Italy [22]. These differences current study four different CTs (Ib, II, III and V) isolated from ne-
among CCs may be due to the horizontal transfer of macrolide onates and more than half were CTIII. Similar findings have been
resistant genes, which has been shown to occur between distinct observed in Poland and Taiwan [6,20] where CTIII was shown to be
clones [25]. According to our observations, tetracycline resistance common in neonates, but differs from Lebanon in which CTV has
was not limited to either a specific capsular or sequence type but been introduced as a predominant type [45]. The diversity in CTs
was present in four different CT (Ib, II, III and V) and 8 different STs. distribution might be related to the source of isolations, ethnic
Our results were similar to those reported in Poland and Italy origins, and diagnostic techniques as well as differences in the
[22,26]. In the current study, all isolates were susceptible to peni- spreading of GBS isolates worldwide [13,21]. Moreover, several
cillin, vancomycin, linezolid and quinupristin-dalfopristin. These studies show that the CTIII is associated with invasive disease in
findings are in agreement with reports from other authors [27e29] neonates therefore the high prevalence of CTIII is a major concern
and confirm that application of penicillin as a first-line agents for [9,11,13,20]. In conclusion, this study as a first report about
122 M. Emaneini et al. / Microbial Pathogenesis 99 (2016) 119e122

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