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E5TD154M015 Alignment
E5TD154M015 Alignment
0+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and
Webb Miller (2000), "A greedy algorithm for aligning DNA
sequences", J Comput Biol 2000; 7(1-2):203-14.
RID: E5TD154M015
Score E
Max
Sequences producing significant alignments: (Bits) Value
ident
ALIGNMENTS
>KX548973.1 Polyporus arcularius voucher Cui10998 internal transcribed spacer
1, partial sequence; 5.8S ribosomal RNA gene, complete
sequence; and internal transcribed spacer 2, partial sequence
Length=566
Query 1 GCTCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 52 GCTCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGTT 111
Query 1 GCTCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 GCTCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGTT 124
>JQ717353.1 Penicillium spinulosum strain C3-6 18S ribosomal RNA gene, partial
sequence; and internal transcribed spacer 1, 5.8S ribosomal
RNA gene, internal transcribed spacer 2, and 28S ribosomal
RNA gene, complete sequence
Length=649
Query 1 GCTCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 GCTCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGTT 134
>JQ769267.1 Fungal sp. FEF4 18S ribosomal RNA gene, partial sequence; internal
transcribed spacer 1 and 5.8S ribosomal RNA gene, complete
sequence; and internal transcribed spacer 2, partial sequence
Length=634
Query 1 GCTCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 108 GCTCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGTT 167
>AJ542518.1 Polyporus sp. E7355 5.8S rRNA gene, 26S rRNA gene (partial),
ITS1 (partial) and ITS2, specimen voucher CSIRO (M) E7355
KM985657.1 Polyporus sp. BPSM20 internal transcribed spacer 1, partial sequence;
5.8S ribosomal RNA gene, complete sequence; and internal
transcribed spacer 2, partial sequence
Length=570
Query 1 GCTCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 39 GCTCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGTT 98
Query 1 GCTCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 52 GCTCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGTT 111
Query 1 GCTCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 91 GCTCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGTT 150
Query 1 GCTCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 52 GCTCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGTT 111
Query 1 GCTCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGTT 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 89 GCTCATCCACTCTGCACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGTT 148
Query 1 GCTCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 52 GCTCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGTT 111
Query 1 GCTCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 71 GCTCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGTT 130
>LC415540.1 Polyporus arcularius FCG-1946 genes for 18S rRNA, ITS1, 5.8S
rRNA, ITS2, 28S rRNA, partial and complete sequence
Length=614
Query 1 GCTCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 GCTCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGTT 122
Query 1 GCTCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16 GCTCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGTT 75
Query 1 GCTCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 33 GCTCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGTT 92
Query 1 GCTCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 87 GCTCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGTT 146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Matrix: blastn matrix:1 -2
Gap Penalties: Existence: 0, Extension: 0
Number of Sequences: 52085306
Number of Hits to DB: 0
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10: 74138
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 74471
Number of HSP's successfully gapped: 74461
Length of query: 491
Length of database: 214274604493
Length adjustment: 34
Effective length of query: 457
Effective length of database: 212503704089
Effective search space: 97114192768673
Effective search space used: 97114192768673
A: 0
X1: 13 (25.0 bits)
X2: 32 (59.1 bits)
X3: 54 (99.7 bits)
S1: 13 (25.1 bits)
S2: 23 (43.6 bits)