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A SEA OF MICROBES
The ocean represents a major reservoir fur emissions have currently been over- reactions, called dissimilatory sulfur
of sulfur on Earth, with large quanti- taken by anthropogenic emissions, pri- metabolism. These latter processes are
ties in the form of dissolved sulfate and marily from the burning of fossil fuels. essential for the cycling of sulfur on our
sedimentary minerals (e.g., gypsum Sulfur is an essential element for life. planet, and will be the primary subject
and pyrite). Sulfur occurs in a variety However, at any given time, only a small of this article.
of valence states, ranging from –2 (as fraction is bound in biomass. Sulfur Sulfur compounds can be used as
in sulfide and reduced organic sulfur) makes up about 1% of the dry weight electron acceptors or electron donors in
to +6 (as in sulfate). Sulfate is the most of organisms, where it occurs mainly as processes known as sulfate/sulfur reduc-
stable form of sulfur on today’s oxic constituents of protein (primarily the tion and sulfur oxidation, respectively.
Earth; weathering and leaching of rocks S-containing amino acids, cysteine and Whereas the former are strictly anaerobic
and sediments are its main sources to methionine), but also in coenzymes processes, the latter can occur aerobically
the ocean. In addition, the reduced inor- (e.g., coenzyme A, biotin, thiamine) as well as anaerobically, with either oxy-
ganic forms of sulfur, with oxidation in the form of iron-sulfur clusters in gen or nitrate acting as electron accep-
tors, or in anoxygenic, anaerobic photo-
synthesis. The latter process can play an
The global sulfur cycle depends on the important role in microbial mats or eux-
inic (anoxic and sulfidic) water columns,
activities of metabolically and phylogenetically
such as the Black Sea (e.g., Koblizek et al.,
diverse microorganisms, most of which 2006), but they will not be further dis-
reside in the ocean. cussed here. In addition, the metabolism
of organic sulfur compounds is a key
component of the global sulfur cycle.
states of –2 and 0 (as in elemental sulfur) metalloproteins, and in bridging ligands Although the microorganisms car-
are quite common in anoxic environ- (molecules that bind to proteins, for rying out different reactions of the sul-
ments, with sulfur compounds of mixed example, in cytochrome c oxidase).
valence states (e.g., thiosulfate and poly- Microorganisms can use inorganic sul- STEFAN M. SIEVERT (ssievert@whoi.edu)
thionates) produced transiently. The fur, mainly sulfate, to form these organic is Associate Scientist, Biology Department,
natural release of volatile organic sulfur compounds in an energy-dependent Woods Hole Oceanographic Institution,
compounds from the ocean, mainly as process referred to as assimilation. Woods Hole, MA, USA. RONALD P. KIENE
dimethyl sulfide (DMS), transports sul- However, animals are dependent on is Professor, Department of Marine Sciences,
fur from the ocean to terrestrial regions, preformed organic sulfur compounds University of South Alabama, Mobile,
and it also affects atmospheric chemistry to satisfy their sulfur needs. In addi- AL, USA. HEIDE N. SCHULZVOGT is
and the climate system (Figure 1). While tion to assimilation, many bacteria and Juniorprofessor, Institute for Microbiology,
they remain very important, natural sul- archaea can use sulfur in energy-yielding Leibniz University, Hannover, Germany.
UV Radiation
(atmospheric photochemistry) Atmospheric deposition
Organic Sulfur
compounds (e.g., DMS)
1 Photic Zone DMS
Deposition
Sulfate DMSP
Hydrogen sulfide
NH4+/SO42-
S0-globules
Sulfate
Hydrothermal
circulation
Figure 1. Diagram illustrating where the cycling
of sulfur compounds plays a prominent role in the ocean.
(1) In the upper water column, metabolism of organic sulfur com-
pounds is of particular relevance. Dimethylsulfoniopropionate (DMSP) pro-
duced by algae (e.g., Emiliana huxleyi) is utilized by a diverse assemblage of microbes
(e.g., Silicibacter pomeroyi), leading either to the production of methanethiol (MeSH) or
dimethylsulfide (DMS), both of which are highly reactive volatile compounds that can escape to the atmosphere. (2) On the continental shelf, sulfate reduction
contributes significantly to organic-matter degradation. The hydrogen sulfide produced can be re-oxidized by so-called colorless sulfur-oxidizing bacteria
(e.g., Thiomargarita namibiensis). These processes are of particular importance in coastal upwelling regions, such as off the coast of Namibia, where Thiomargarita
namibiensis becomes abundant. It is also in these regions that large sedimentary deposits of phosporites are found. (3) At deep-sea hydrothermal vents, sulfate
precipitates out of seawater as anhydrite (CaSO4) at temperatures above 150°C. However, hydrogen sulfide is produced by leaching sulfur from basalt at high
temperatures (~ 400°C) in the oceanic crust. The hydrogen sulfide contained in the ensuing reduced hydrothermal fluids is utilized in energy-yielding reactions
by free-living and symbiotic sulfur-oxidizing microbes, providing the basis for the lush animal communities found at deep-sea vents. On land, volcanic emissions
are the main natural sources of sulfur to the atmosphere. Photochemical processes in the atmosphere oxidize various sulfur species.
fur cycle are extremely diverse, most of the sulfur cycle has multiple ties to the HABITATS
them belong to the bacterial domain cycles of other elements, most notably Photic Zone
(Figure 2). Sulfur-metabolizing archaea those of carbon, nitrogen, phospho- The sulfur cycle of the surface ocean
are mainly restricted to high-temperature rous, and iron. Below, we highlight three begins with the assimilatory uptake of
environments, such as deep-sea hydro- marine habitats where sulfur cycling is sulfate by phytoplankton (both eukary-
thermal vents. Sulfur cycling in the bio- particularly important, namely, the pho- otic algae and prokaryotic cyanobacte-
sphere is very rapid, and microorganisms tic zone of the coastal and open ocean, ria) (Figure 1). Some sulfate is incor-
in the ocean play an essential role. As a continental margin sediments, and deep- porated, in oxidized form, into sulfated
result of the activities of these microbes, sea hydrothermal systems. polysaccharides (e.g., mucus), but most
Archaea Desulfurococcales
Crenarchaeota
Sulfolobales
Thermoproteales
Thermococcales
Euryarchaeota
Thermoplasmatales
Some methanogens, e.g., Methanosarcina
Archaeoglobales
Desulfurococcales Thermococcales
Sulfolobales Thermoplasmatales
Some methanogens, e.g., Methanosarcina
Bacteria
Bacteria Nitrospiraceae
A-Proteobacteria Thermodesulfovibrio
Nitrospiraceae
A-Proteobacteria
Roseobacter-clade, SAR-11
Thermodesulfovibrio
Paracoccus
Roseobacter-clade, SAR-11
Various genera, e.g., Rhodobacter,
Paracoccus
Rhodospirillum
Various, genera,
Rhodomicrobium
e.g., Rhodobacter,
Rhodospirillum , Rhodomicrobium Aquificae
B-Proteobacteria Aquificae
Aquifex, Persephonella,
B-Proteobacteria
Thiobacillus, Thiomonas
Aquifex, Persephonella,
Sulfurihydrogenibium
Sulfurihydrogenibium
Desulfurobacterium, Thermovibrio,
Thiobacillus, Thiomonas
Alcaligenes Desulfurobacterium, Thermovibrio,
Alcaligenes Balnearum
Rubrivivax , Rhodocyclus, Rhodoferax Balnearum
Rubrivivax , Rhodocyclus, Rhodoferax
Thermodesulfobacteriaceae
G-Proteobacteria
G-Proteobacteria
Thermodesulfobacteriaceae
Thermodesulfatator,
Thermodesulfatator,
Various genera,
Various e.g., Thiomicrospira,
genera, Beggiatoa
e.g., Thiomicrospira, ,
Beggiatoa , Thermodesulfobacterium
Thermodesulfobacterium
ThioplocaThioploca
, Thiomargarita
, Thiomargarita
Symbionts of invertebrates
Symbionts
Methylophaga,
(e.g. , Riftia,
of invertebrates
Pseudomonas,
Calyptogena)
(e.g. , Riftia, Calyptogena) Chloroflexaceae
Chloroflexaceae
Methylophaga, Pseudomonas, Chloroflexus
Chloroflexus
Unidentified Gammaproteobacteria
Unidentified Gammaproteobacteria
Chromatiaceae
Chromatiaceae , Ectothiorhodospiraceae
, Ectothiorhodospiraceae Firmicutes
Firmicutes
Desulfotomaculum,
Desulfotomaculum,
D-Proteobacteria
D-Proteobacteria
Desulfosporosinus
Desulfosporosinus
Ammonifex
Various genera, e.g., Desulfovibrio, Desulfotalea Ammonifex
Various genera, e.g., Desulfovibrio,
Desulfonema, Desulfosarcina, Desulfotalea
Desulfobacter Chlorobiaceae
Desulfonema, Desulfosarcina,
Desulfuromonas, Desulfobacter
Desulfurella, Desulfuromusa,
E-Proteobacteria Chlorobiaceae
Desulfuromonas,
GeobacterDesulfurella, Desulfuromusa,
GeobacterSome sulfate reducers, e.g., Desulfovibrio E-Proteobacteria
Arcobacter, Thiovulum , Sulfurimonas,
Some sulfate reducers, e.g., Desulfovibrio Sulfurovum
Arcobacter, Thiovulum , Sulfurimonas,
Various genera, e.g., Sulfurospirillum,
Sulfurovum
Nautilia, Caminibacter
Various genera, e.g., Sulfurospirillum,
Nautilia, Caminibacter
Phototrophic sulfur-oxidizers Chemolithotrophic sulfur-oxidizers Sulfur reducers Sulfate reducers Organic sulfur utilizers
Phototrophic phylogenetic treeChemolithotrophic
sulfur-oxidizers
Figure 2. Schematic sulfur-oxidizers
depicting the distribution Sulfur reducersmicroorganisms
of different types of sulfur-metabolizing Sulfateamong
reducers Organic
major phylogenetic sulfurAllutilizers
lineages.
forms of sulfur metabolism can be found within the proteobacteria, whereas as other lineages are more restricted in their physiological repertoire. Note that the
capability to convert DMSP into DMS is widespread among bacteria, and that not all of the lineages with members capable of this conversion are shown in the
tree. Adapted from Giovannoni and Stingl (2005)
is assimilated into methionine and cys- grazing deterrent (Stefels, 2000; Sunda accounts for about 50 x 1012 moles of
teine. Methionine is converted by some et al., 2002). Diatoms produce rela- sulfur per year. Because each molecule
phytoplankton into dimethylsulfonio- tively low amounts of DMSP (1–50 mM of DMSP contains five atoms of carbon,
propionate (DMSP) (Gage et al., 1997), intracellular concentrations), but DMSP synthesis is also important in the
a highly stable and soluble form of dinoflagellates, prymnesiophytes, and carbon cycle; its production is estimated
reduced sulfur. Because of its high cyto- some chrysophytes produce very large to account for 3–10% of the global
plasmic concentrations, DMSP func- amounts (100–300 mM intracellular marine primary production of carbon
tions as an osmolyte, but it also has other concentrations). On the whole, DMSP (Kiene et al., 2000), and its degradation
functions, such as an antioxidant and synthesis by marine photoautotrophs supplies about 3–10% of the carbon