Professional Documents
Culture Documents
Ecology and Biodiversity
Ecology and Biodiversity
By
Rahul Srivastava
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ISBN:978-81-89645-06-9
ISBN: 81-89645-06-4
Editor
Contents
Preface v
1. Function of Biodiversity in the Ecology 1
2. Natural Ecosystems 22
3. Impacts of Climate Change on Biodiversity 45
4. Biodiversity and Ecosystem Functioning 52
5. Ecosystem Functioning at
Local and Regional Scales 61
6. Freshwater Ecosystem 81
7. Aquatic Systems 101
8. Impact of Dams on Biodiversity 107
9. Agricultural Ecosystem 151
10. Bacterial Biodiversity 174
11. Ecological Forecasting and the
Urbanisation of Stream Ecosystems 189
12. Land Use Appraisal 212
13. Population Diversity 228
14. Model Systems for Ecology 240
15. Biodiversity, Ecosystem Services
and the UN Millennium Declaration 250
Bibliography 262
Index 264
"This page is Intentionally Left Blank"
1
Function of Biodiversity in the
Ecology
meal become active about 1 year later, after they molt into
infected nymphs capable of transmitting the pathogen to
their hosts. Those not infected during their larval meal
have a second opportunity to acquire the Lyme disease
pathogen during their nymphal meal.
Ticks that become infected during either their larval
or their nymphal meal will molt into an infected adult,
which becomes active between several months and >1 year
later. Thus, both nymphs and adults are capable of
transmitting Lyme disease, as well as perpetuating the
enzootic cycle, when they bite a reservoir host. The
synchrony between annual peaks in activity of nymphs
and human cases of Lyme disease suggests that most cases
of Lyme disease result from transmission of the pathogen
by nymphs rather than by adults. Given the small size of
nymphs of Ixodes spp. and their tendency to reach a
seasonal activity peak in summer, when humans are most
likely to enter tick habitat, it is not surprising that the
nymphal stage is most dangerous to people.
Two parameters describing the tick population are
crucial in determining the probability of human exposure
to Lyme disease within specific localities that people use
domestically or recreationally. The first is nymphal
infection prevalence (NIP) within the local population,
defined as the proportion of nymphal ticks that are
infected with B. burgdorferi. NIP will determine the
probability that a given bite from a nymphal tick will
transmit Lyme disease to the human host. NIP will be a
function of the distribution of larval ticks among vertebrate
hosts. The larger the proportion of larvae that feed from
highly competent reservoirs, the higher will be the
infection prevalence in the nymphal generation. The
second parameter is the local density of infected nymphs
(DIN), which will strongly influ~nce the probability that
a person will encounter a tick capable of transmitting
Lyme disease.
6 Ecology and Biodiversity
ECOSYSTEM SERVICES
Ecosystem Goods
Humanity obtains from natural ecosystems an array of
ecosystem goods - organisms and their parts and
products that grow in the wild and that are used directly
for human benefit. Many of these, such as fishes and
animal products, are commonly traded in economic
markets. The annual world fish catch, for example,
amounts to about 100 million metric tons and is valued at
between $50 billion and $100 billion; it is the leading
source of animal protein, with over 20% of the population
in Africa and Asia dependent on fish as their primary
source of protein.
The commercial harvest of freshwater fish worldwide
in 1990 totaled approximately 14 million tons and was
valued at about $8.2 billion. Interestingly, the value of the
freshwater sport fishery in the U.S. alone greatly exceeds
that of the global commercial harvest, with direct
expenditures in 1991 totaling about $16 billion. When this
is added to the value of the employment generated by
sport fishing activities, it raises the total to $46 billion.
The future of these fisheries is in question, however,
because fish harvests have approached or exceeded
sustainable levels virtually everywhere. Nine of the
world's major marine fishing areas are in decline due to
overfishing, pollution, and habitat destruction. Turning
attention to the land, grasslands are an important source
of marketable goods, including animals used for labor
(horses, mules, asses, camels, bullocks, etc.) and those
Natural Ecosystems 27
vulnerable. Plants and plant litter shield the soil from the
full, destructive force of raindrops and hold it in place.
When landscapes are denuded, rain compacts the
surface and rapidly turns soil to mud (especially if it has
been loosened by tillage); mud clogs surface cavities in
the soil, reduces infiltration of water, increases runoff, and
further enhances clogging. Detached soil particles are
splashed downslope and carried off by running water.
Erosion causes costs not only at the site where soil is
lost but also in aquatic systems, natural and human-made,
where the material accumulates. Local costs of erosion
include losses of production potential, diminished
infiltration and water availability, and losses of nutrients.
Downstream costs may include disrupted or lower quality
water supplies; siltation that impairs drainage and
maintenance of navigable river channels, harbors, and
irrigation systems; increased frequency and severity of
flo.ods; and decreased potential for hydroelectric power as
reservoirs fill with silt.
Worldwide, the replacement cost of reservoir capaci ty
lost to siltation is estimated at $6 billion per year. In
addition to protecting soil from erosion, living vegetation
- with its deep roots and above-ground evaporating
surface - also serves as a giant pump, returning water
from the ground into the atmosphere. Clearing of plant
cover disrupts this link in the water cycle and leads to
potentially large increases in surface runoff, along with
nutrient and soil loss. A classic example comes from the
experimental clearing of a New Hampshire forest, where
herbicide was applied to prevent regrowth for a 3-year
period after the clearing. The r~sult was a 40 percent
increase in average stream flow. During one four-month
period of the experiment, runoff was more than 5 times
greater than before the clearing.
34 Ecology and Biodiversity
Soil
Soil represents an important component of a nation's
assets, one that takes hundreds to hundreds of thousands
of years to build up and yet very few years to be lost.
Some civilizations have drawn great strength from fertile
soil; conversely, the loss of productivity through
mismanagement is thought to have ushered many once
flourishing societies to their ruin. Today, soil degradation
induced by human activities afflicts nearly 20 percent of
the Earth's vegetated land surface.
Natural Ecosystems 35
Animal Pollination
Animal pollination is required for the successful
reproduction of most flowering plants. About 220,000 out
of an estimated 240,000 species of plants for which the
mode of pollination has been recorded require an animal
such as a bee or hummingbird to accomplish this vital
task. This includes both wild plants and about 70 percent
of the agricultural crop species that feed the world. Over
100,000 different animal species - including bats, bees,
beetles, birds, butterflies, and flies - are known to provide
these free pollination services that assure the perpetuation
of plants in our croplands, backyard gardens, rangelands,
meadows and forests.
In tum, the continued availability of these pollinators
depends on the existence of a wide variety of habitat types
needed for their feeding, successful breeding, and
completion of their life cycles. One third of human food
is derived from plants pollinated by wild pollinators.
Without natural pollination services, yields of important
crops would decline precipitously and many wild plant
species would become extinct.
In the United States alone, the agricultural value of
wild, native pollinators - those sustained by natural
habitats adjacent to farmlands - is estimated in the
billions of dollars per year. Pollination by honey bees,
originally imported from Europe, is extremely important
as well, but these bees are presently in decline, enhancing
the importance of pollinators from natural ecosystems.
Management of the honey bee in the New World is
currently threatened by the movement of, and
hybridization with, an aggressive African strain of honey
bee that was accidentally released in Brazil in 1956.
Diseases of honey bee colonies are also causing a
marked decline in the number of managed colonies.
Meanwhile, the diversity of natural pollinators available
Natural Ecosystems 39
Seed Dispersal
Once a seed germinates, the resulting plant is usually
rooted in place for the rest of its life. For plants, then,
movement to new sites beyond the shadow of the parent
is usually achieved through seed dispersal. Many seeds,
such as those of the dandelion, are dispersed by wind.
Some are dispersed by water, the most famous being the
seafaring coconut. Many other seeds have evolved ways
of getting around by using animals as their dispersal
agents.
These seeds may be packaged in sweet fruit to reward
an animal for its dispersal services; some of these seeds
even require passage through the gut of a bird or mammal
before they can germinate. Others require burial - by,
say, a forgetful jay or a squirrel which later leaves its cache
uneaten - for eventual germination. Still others are
equipped with sticky or sharp, spiny surfaces designed to
catch onto a passing animal and go for a long ride before
dropping or being rubbed off. Without thousands of
animal species acting as seed dispersers, many plants
would fail to reproduce successfully.
For instance, the whitebark pine (Pinus albicaulis), a
tree found in the Rockies and Sierra Nevada - Cascade
Mountains, cannot reproduce successfully without a bird
Natural Ecosystems 41
',,'
4
Biodiversity and
Ecosystem Functioning
ECOSYSTEM FUNcnONING
ECOSYSTEM
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Figure 2. Responses of total (A) or ai1f.)vegrolllld (B and C) plant biomass
(in grams per meter squared) to experimental //Iall/pulations of plant
species richness (A and B) or functional-group ric/mess (0 in grasslallds
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70 Ecology and Biodiversity
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111 2D
Biodiversity as Insurance
Even when high diversity is not critical for maintaining
ecosystem processes under constant or benign
environmental conditions, it might nevertheless be
important for maintaining them under changing
conditions. The insurance hypothesis and related
hypotheses propose that biodiversity provides an
"insurance" or a buffer, against environmental fluctuations,
because different species respond differently to these
fluctuations, leading to more predictable aggregate
community or ecosystem properties.
In this hypothesis, species that are functionally
redundant for an ecosystem process at a given time are
no longer redundant through time. In a way, this is the
old stability-versus complexity debate resurfacing in a new
form. Several problems, however, have confused this
historical controversy:
The general concept of "stability" actually covers a
wide array of different properties;
the relationship between these properties and diversity
may change across ecological levels of organisation
such that large variability at the population level may
not imply large variability of ecosystem processes; and
stability has been approached mainly within a
deterministic, equilibrium theoretical framework.
Ecosystem Functioning at Local and Regional Scales 75
~
A ..:!... B
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6011 and climate
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Generalising Ecosystems
Most of the recent experiments that found significant
effects of species diversity have concerned effects of plant
diversity on primary production and nutrient retention in
temperate grasslands, both of which are under direct plant
control. These and other experiments have often failed to
detect significant effects on below-ground decomposition
processes, perhaps because these processes are under
microbial control.
Primary production in grasslands can be generalised
to other processes and ecosystems. Plants can affect soil
processes either directly, by stimulating or inhibiting
decomposition rates, or indirectly, through increased
primary production, by enhancing decomposition fluxes.
Although some experiments found positive effects of plant
diversity on soil microbial processes, experiments using
litter addition, cotton strips, or litter mixing often showed
variable and weak effects of plant diversity on
decomposition rates.
Current evidence suggests that properties of
individual plant species are more important than plant
diversity in governing soil process rates. Theoretical work
predicting that plant chemical quality diversity should
decrease or not affect long-term nutrient recycling
efficiency and productivity. In contrast, increased primary
production generated by higher plant diversity is expected
Ecosystem Functioning at Local and Regional Scales 79
WATER QUALITY
Flow Patterns
An evaluation of the characteristics required for healthy
functioning can begin with a description of the natural or
historical flow patterns for streams, rivers, wetlands and
lakes. Certain aspects of these patterns are critical for
regulating biological productivity (that is, the growth of
algae or phytoplankton that form the base of aquatic food
webs) and biological diversity, particularly for rivers. These
aspects include base flow, annual or frequent floods, rare
and extreme flood events, seasonality of flows, and annual
variability. Such factors are also relevant for evaluating
the integrity of lakes and wetlands because flow patterns
and hydroperiod (that is, seasonal fluctuations in water
levels) influence water circulation patterns and renewal
rates, as well as types and abunaances of aquatic
vegetation such as reeds, grasses, and flowering plants.
Furthermore, the characteristic flow pattern of a lake,
. wetland, or stream critically influences algal productivity
and is an important factor to be considered when
Freshwater Ecosystem 87
CHALLENGES
6icdiwnily
'ProdLlClivIty"
WORLD'S FRESHWATERS
pollution.
Eutrophication.
Channelisation Simplification of Loss of habitats,
and levee river structure. flood plains and
construction 500,000 km of wetlands.
river altered for
shipping.
Fishing Over-harvesting. Reduced populations,
Gear damage. loss of stocks, changed
food webs, and
habitat loss.
Acid rain Reduction of Reduction of
pH (increase in populations or
acidity) of lakes extirpation of species
and streams of molluscs,
down to 4.5 or lower amphibians, fishes,
in thousands of water etc. in water
bodies in North bodies. Development
America and Europe. of skeletal abnormalities.
Deposition of aluminium
on fish gills.
Human population Doubled to 6 billion
and per capita since 1975.
consumption Per capita consumption
doubled since 1950.
Population/ consumption
rate increases magnify
each sector impact
above. Humans use 54%
of geographically &
temporally accessible
water.
BIODIVERSITY STATUS
Group Proportion
Threatened (%)
Mammals - all 25
Land birds 11
Waterfowl (freshwater) 13
Turtles, tortoises and terrapins 38
Crocodiles 43
Amphibians 25 (estimated)
Freshwater fishes 33 (estimated)
Freshwater mammals
(freshwater dolphins and otters) 65
Birds 15
Mammals 17
Freshwater fishes 39
Amphibians 40
Freshwater crayfishes 51
Freshwater mussels 68
Molluscs
Extinctions are a significant problem in terrestrial,
freshwater and marine molluscs. Of all the species that
became extinct since 1600 AD, 37% were mollusc species,
which is more than any other group evaluated (birds 17%,
mammals 14%, fish 14%, reptiles 3%, and all others 15%).
These percentages refer to the total known globally. It
should be made clear that the percentages are affected by
the degree to which the group has been studied and the
number of species in the group, e.g. the status of birds is
better studied than that of molluscs, but there are more
mollusc than bird species. The 1996 IUCN Red List of
Threatened Animals lists 12 bivalves and 216 gastropods
as extinct, and 114 bivalves and 806 gastropods as
threatened, for a total of 228 extinct and. 920 threatened
terrestrial, freshwater and marine molluscs.
About 18% or 145 of the threatened molluscs are
spring molluscs. Data on threatened freshwater molluscs
are given in Table 4).
Extinct 12 14 26
Critically endangered 85 60 145
Endangered 24 86 110
Vulnerable 8 194 202
Near threatened 66 35 101
Data deficient 4" 104" 108"
Birds
According to the 1996 Red List, 1,107 species or 11% of
all bird species are threatened and 104 are extinct.
Amongst the more threatened of bird groups are the
aquatic Gruiformes (rails and cranes) with 54 species, and
the partially aquatic Coraciiformes (kingfishers and bee-
eaters) with 11.5% threatened, while 18% of the
Podicipediformes (grebes) are threatened. Extinct aquatic
birds include the Colombian grebe (Podiceps andinus) and
the Atitlan grebe (Podilymbus gigas). Thirteen per cent of
114 Ecology and Biodiversity
Plants
There are about 270,000 scientifically described species of
vascular plants, but the true number may be in the order
of 300,000-350,000 species. Two important documents on
global plant biodiversity have been published in recent
years, Centres of plant diversity, in three volumes, and
the 1997 IUCN Red list of threatened plants. About 78%
of the world's plants are tropical (the zone between the
Tropic of Cancer and the Tropic of Capricorn). More than
40,000 plant species, about a quarter of the world's tropical
plant diversity, occurs in Colombia, Ecuador and Peru,
while Brazil has between 40,000 and 80,000 species.
Tropical and subtropical (areas north and south of
the tropics but outside of the temperate zone) Asia has at
least 50,000 species and Southern Africa has 21,000 species
of plants, of which 80% are endemic. The Red list of
threatened plants demonstrated that 32,112 species or
11.9% of the world's 270,000 vascular plant species, are
threatened, and 374 or 14% are extinct. The counts are for
terrestrial and aquatic species combined. Of these, 6,522
species are classed as endangered. Thirty-two countries
have at least 5% of their native species threatened. The
main countries (excluding small islands) having high
proportions of threatened species, 11-29%, include the
Impact of Dams on Biodiversity 115
LARGE DAMS
Parana 14
Colombia 13
Colorado 12
Mississippi 9
Volga 9
Tigris and Euphrates 7
Nelson 7
Danube 7
Yenisey 6
Yangtze 6
V ALUE OF BIODIVERSITY
Globally terrestrial and aquatic ecological functions have
been calculated to be minimally worth US$33 trillion per
year, almost twice the value of the global gross national
product, some $18 trillion, although the figure contains the
value of some biological resources as well as functions.
The annual per hectare total global flow value of inland
water systems, US$6,579 x 109 exceeded that from all other
non-marine ecosystems combined - US$5,740 x 109.
Ecological functions, although not ordinarily included
in gross global or national! domestic products nevertheless
make significant contributions to economies. Freshwater
ecosystems are economically more valuable than terrestrial
ones. In many developing countries, fishes, including those
from freshwater make a notable contribution in animal
proteins to an otherwise carbohydrate-based diet. In the
Amazon, the per capita consumption rate is 67 kgyr- 1
higher than in many areas. In Tonie Sap, Cambodia,
100,000 tonnes of freshwater fish are caught annually,
which source alone would provide a per capita 10 kgyr 1 •
Biodiversity has many kinds of values and potential
benefits for humans and the world as a whole. Before it
is diminished, those responsible may well wish to consider
the Precautionary Principle and take action to conserve it
before components of it are permanently lost, even when
the evidence for loss is not as strong as might be desired.
Impact of Dams on Biodiversity 119
Longitudinal Gradients
Species richness can change from the headwaters to the
river mouth. This may be related to changes in stream
order, water temperature, oxygen, current, turbidity and
available nutrients. The small headwater streams may have
low numbers of fishes that increase downstream as the
number of available habitats increases. Further and larger
downstream segments of the river may have moderate
numbers of species because lower habitat variety, and river
estuaries, where salinity varies, may also have moderate
species numbers.
Higher numbers of fish species are found in the
Tennessee-Cumberland plateau drainage of the Mississippi,
USA, than in the adjacent mainstream Mississippi; this
may reflect more numerous habitats in the varied
topography of the former, compared to the more constant
gradient of the latter. Different species may characterise
different river segments. Trout (Salmo) and sculpins
(Cottus) may occupy headwaters, minnows and catfishes
(Cyprinidae and Ictaluridae) midriver sections, and
euryhaline (salinity-level tolerant) species are found in the
estuaries. Freshwater molluscs generally increase from the
headwaters to the river mouth. This again is related to an
increase in habitats in the floodplain areas in the middle
or lower reaches.
Latitudinal Gradients
Latitude-longitude grids have the disadvantage that the
size of their grid cells shrinks towards the poles, a
disadvantage in making comparisons of numbers of
species if the study area spans several degrees of latitude.
It is generally accepted that the number of species tends
to increase from the poles to the tropics. Arctic waters can
therefore be expected to contain fewer species than ones
in the tropics. In many freshwater lakes in the Arctic there
Impact of Dams on Biodiversity 121
Moist-arid Gradients
Species diversity of North American fishes was related to
a measure of 'aridity'. Data indicated that more species
were found in moist compared to arid areas. The study
showed at what critical level of moisture fish diversity
began to increase rapidly. Although arid areas may be
poor in species, desert springs or other water bodies may
be rich in endemic organisms, for example, there are vast
numbers of endemic spring-snails and fairy shrimps in the
arid west regions of the USA.
Hotspots
'Hotspots' are geographic areas rich in species. 'Hotspots'
often dominate over latitudinal and other gradients for
plants and animals. McAllister et al. listed countries that
are rich in absolute numbers of aquatic species and in the
number of species per unit area. There is some evidence
that 'hotspots' for different groups of freshwater organisms
are correlated, for example McAllister et al. found that the
numbers of amphibian and fish species in 12 'mega-
diversity' countries were highly correlated (r=O.937).
Revenga et al. catalogued the number of fish species,
endemic bird areas and percentage area of wetlands for
most of the world's primary watersheds. From this was
determined the twenty richest basins (Table 8).
122 Ecology and Biodiversity
Table 8. River basins and sub-basins with the highest number of native
species per unit area (in descending order) and the number of associated
large and major dams.
Nutrients
Conventionally, rivers have been regarded as the one-way
transfer of matter downstream. Experiments by the
Fisheries Research Board of Canada several decades ago
showed that removal of spawned out sockeye salmon
carcasses from streams reduced the growth of fry in the
following year. Recently there has been greater
appreciation that migrating species carry nutrients
upstream. Researchers proposed that intensive coastal
12X Ecology and Biodiversity
Turbidity
Reservoirs trap suspended particles, reducing turbidity
downstream. Many species are adapted to natural
turbidity. For example turbid water catfishes have small
eyes, refined senses of smell and touch in their sensitive
barbels. The turbid water helps conceal the fish and other
biota from visual predators like birds. When normally
turbid water becomes clear below dams, the indigenous
species may find themselves at a disadvantage. Other
animal species may move in, filter feeders and aquatic
vegetation may flourish. Sediment burrowing species may
find their habitat has diminished. Flood plain ecosystems
and deltas may no longer be replenished by the annual
transport of sediment. Silt and increased turbity, above
natural levels, can interfere with primary production. In
the Mekong River system, silt levels increased following
deforestation. This resulted in siltation of the river, lakes
and swamps threatening the river fisheries.
Watering wildlife
As long as there is sufficient river flow below the dam,
wildlife such as deer, antelope and elephants wiII come
to the water, especially in the dry and hot season for
drinking. Hippopotamuses will use water of sufficient
depth as a day-time refuge, emerging to forage at night.
Many birds may fly in to drink. These lateral movements
can extend to several kilometres from the river. The
reservoir itself, however, may serve as a source of water
during the dry season or droughts, to wildlife living within
range. Watering terrestrial vegetation. Water release
protocols can lower water tables lateral to the rivers which
may affect vegetation there.
Riparian ecosystems along most major western rivers
of the U. S. have changed as a result of water development
and flood control. Losses of riparian forest downstream
of dams have been reported throughout western North
America. Cottonwood-willow stands are being replaced by
nonnative woody species such as Russian olive and
tamarisk. This may result in diminished LOD input.
Impact of Dams on Biodiversity 131
Upstream
Above the reservoir: Water quality, flow and seasonality of
flow are not normally disrupted in the upstream area
above the reservoir so impacts are generally less than for
the reservoir and downstream areas. Nevertheless, the dam
Impact of Dams on Biodiversity 133
Table 10. Factors affecting the life cycle stages of IInionid molluscs.
Number of sites 8 6
Downstream
In the downstream segment, most of the impacts of a dam
are negative. In a preliminary assessment of 66 case studies
of the impact of dam construction on fishes, based on
qualitative information, 73% of the impacts were negative
and only 27% were positive. About 55% of the impacts
142 Ecology and Biodiversity
Abiotic changes
In summer, in temperate lakes, solar radiation heats the
eplimnion but not the hypolimnion. The hypolimnion is
often anoxic. In the autumn the lake undergoes mixing
and some heat is transferred to the bottom layers. Water
discharge from the dam is usually below the epilimnion.
Therefore in summer the water discharged into the river
below the dam is colder and has less oxygen than normal
and in winter it is warmer. These physical changes can
effect the biota for long distances down the river.
Discharges from the reservoir are variable usually resulting
Impact of Dams on Biodiversity 145
Inland deltas
Dams trap sediments, diminishing the downstream supply.
An inland delta and flood plain, including a network of
oxbow lakes, in the middle Danube, was supplied by
sediment during natural seasonal floods. The area
produced an impressive harvest of trees, fishes and cereals.
Biota included 65 species of fishes, 11 of amphibians, nine
reptiles, 41 mammals and 242 birds. Construction of a
series of dams, dredging the river channel and construction
of a canal deprived the delta and flood plain of the annual
supply of silt and resulted in severe alterations in the
benthos and zooplankton communities as well as the
change and decrease of species diversity and biomass. The
inland delta was lost eliminating spawning, feeding and
overwintering grounds for fishes.
Amongst fish species lost from the affected area were
the percids, Zingel streber and Zingel zingel, both classed
in the IUCN Red List as vulnerable, and the salmonids,
Hucho hucho, classed by the IUCN Red List as
endangered, and Salmo labrax m. fario. The European
beaver, Castor fiber, has left the territories influenced by
146 Ecology and Biodiversity
the dam. The mean annual fish catch has dropped by 87%.
Anti-gradient, thermal transport. North-flowing rivers such
as the McKenzie River, Canada, transport warmer water
into the Arctic than that from local tributaries. This enables
some species to range further north. .The same
phenomenon would occur in reverse in the Southern
Hemisphere. Rivers flowing towards the tropics or down
from higher cooler altitudes would permit cool water
fishes to extend their ranges.
Dams or series of dams may affect anti-gradient
thermal transport and the ranges of aquatic species which
depend on them. However the thermal transport affects
more than just the species in the river. In the Arctic the
northern limits of the tree-line, appears to be extend
adjacent to north flowing rivers, as well as next to large
lakes which act as reservoirs of summer heat. It is not clear
whether reducing the flow of anti-gradient thermally
transporting rivers, or the effects of reservoirs and
discharge from either epilimnion or hypolimnion will
affect the downstream and lateral distribution of species.
Analysis of data from Russian rivers with older dams
might be useful.
Entrainment
The surface outflow of freshwaters in estuaries, results in
a return current of deeper, nutrient-rich waters. These
nutrients contribute to the high productivity of estuaries.
Reduction of flow may therefore reduce import of
nutrients. There are numerous impoundments in the North
American Great Lakes and St. Lawrence River basin. It is
estimated that the spring and summer runoff at the
entrance to the Gulf of St. Lawrence has been reduced by
between one third and one half.
Many decades of anthropogenic activity have altered
the Laurentian Great Lakes ecosystem and the devastating
changes that took place in the northwestern Atlantic
ground fisheries can be related to this. Coastal fish catches
adjacent to deltas with large upstream volumes of
impoundments have declined seriously from 1950 to 1990,
e.g. the Egyptian Mediterranean to 18% and the western
Black Sea, Sea of Azov and Caspian Sea to <3% of the
original catches. Based on world-wide experience, no more
than 25-30% of the historical river flow to the estuary can
be diverted without disastrous ecological consequences to
Impact of Dams on Biodiversity 149
Cumulative Effects
The addition of each new dam in a river contributes to
the fragmentation of habitat and separation of populations.
Gene flow, hitherto bidirectional, becomes unidirectional,
downstream, reducing genetic diversity. Each new dam
also prevents natural restoration of upstream populations
lost through natural or anthropogenic causes. One of the
biggest cumulative impacts may be that a greater
proportion of running water is converted to still reservoirs
habitat. Table 6 shows that there are 10 basins with 6 to
14 major dams. The Itaipu Reservoir, Brazil, is sited below
a floodplain and hence enhances migratory fishes. The
species inhabit the floodplain, then, when mature, migrate
down into the reservoir. However, the floodplain will
disappear when a new dam being built will cause it to go
underwater.
Canada, river basin impoundments discharge 50%
more water in winter than in the pre-dam era. This has a
number of ecological effects in the estuaries and seawards.
If the dams reservoirs are used for irrigation water supply,
then the volume of flow will become progressively
attenuated, as in the Colorado River, USA, where the
mouth is virtuallv waterless.
9
Agricultural Ecosystem
Erosion of Agro-Biodiversify
However, since traditional agricultural systems were finely
intervowen with the social and cultural fabric of villages,
as also with the forests and other ecological features within
which the villages existed, they could not withstand the
far-reaching changes in land-use, taxation, forest policy,
and administrative structures brought about by the colonial
government in the 19th and 20th centuries. These changes
severely disrupted traditional agriculture. But even more
dramatic changes in Indian agriculture have come in the
last few decades.
Agricultural Ecosystem 165
Conservation Opportunities
A considerable amount of the genetic material which has
been grown or bred by farmers may no longer be available
in the field, but has been collected and stored in gene
banks and breeding stations. The National Bureau of Plant
Genetic Resources and the Indian Council of Agricultural
Research, in their network of gene banks, have several
hundred thousand accessions. Such ex-situ collections are
important, as they are able to store material which may
no longer be possible to grow in the field, and as they
make available the base material for genetic up.sradation
of agriculture.
But such collections also suffer from severe
limitations: they are very expensive, lack adequate space
to store the complete genetic diversity found in agriculture,
and suffer loss of viability of stored germplasm. They also
freeze evolution, since the environmental conditions which
crops are constantly adapting to cannot be recreated in
the icy chills of the gene bank. Finally, they have various
political problems associated with them; on the one hand,
farmers experience considerable difficulty in accessing the
genetic material, and on the other, there is relatively easy
access to formal sector breeders and corporations who use
the material for commercial benefit.
172 Ecology and Biodiversity
Habitat Type
It has long been assumed that major environmental
variables, such as vegetation type and temperature,
influence bacterial-community composition. Recent studies
using culture-independent techniques, a select few of
which we cite here, have confirmed this assumption. The
composition of bacterial communities has been shown to
vary with land-use type, plant species, agricultural
growing practice, temperature, nutrient status, salinity,
contamination with pollutants, predation and other
environmental variables.
We understand less about how these environmental
: variables influence bacterial dive~sity, although, like the
diversity of plants and animals, bacterial diversity is
thought to be heterogeneously distributed across the Earth.
For example, there is a growing consensus that aquatic
environments support fewer bacterial taxa than do soil and
sediment environments. It is not clear which factors are
responsible for these differences, but the high
heterogeneity of the soil environment relative to that of
aquatic environments may playa role.
Habitat Heterogeneity
Habitat heterogeneity has long been posited as one of the
main determinants of biological diversity and is thought
to underlie the seemingly universal species-area
relationship, which states that the number of plant and
animal species observed increases with an increase in area
sampled. This heterogeneity can be thought of as taking
two forms:
Bacterial Biodiversity 179
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A 886
30 17331
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20
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891
0
665
8
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,...,
ill
'a
tl
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CI
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..
.~ 40
65
...
"0
'i!
30 CiIJ
.... 20
(:.5
~ 10 mJ
0
85
operational taxonomic units
Figure 1. The effect of environmental patchiness on bacterial diversity in
(a) surface and (b) saturated soils.
180 Ecology and Biodiversity
Primary Productivity
Primary productivity (the rate of energy capture and
carbon fixation by primary producers) is thought to be a
key determinant of plant and animal biodiversity. Many
studies of plants and animals have reported a positive
quadratic or hump-shaped relationship between
productivity and diversity, where diversity peaks at
intermediate productivities, although other patterns have
also been observed.
There is evidence from laboratory studies that
productivity can influence bacterial diversity; however, we
are aware of only four studies that attempt to document
the relationship between primary productivity and
bacterial diversity in field systems. Two lagoons with
different levels of primary productivity. More unique
bacterial ribosomal gene sequences were retrieved from
the more productive lagoon than from the less productive
lagoon, suggesting that bacterial taxonomic richness
182 Ecology and Biodiversity
16
14
'"
~ 12
..c:
~ 10
.1.. 8
III
6
!iii
2
o~--~--~--~--~~~~~~
1.2 1.4 1.6 1.8 2.0 2.2 2,4 2.6
log chlorophyll "
Figure 2. The relationship between primary productivity and taxonomic
diversity of bacteria in five aquatic mesocosms.
1.0 4
0' .I
Biogeographical Patterns
Biogeographical patterns (i.e. the geographical distributions
of organisms over the Earth in both space and time) have
been relatively well documented for plants and animals.
Whether bacteria exhibit biogeographical patterns has been
controversial for much of the last century. The traditional
view among microbiologists, dating back to at least the
1930s, is that high dispersal rates result in cosmopolitan
distributions and a lack of biogeographical patterns for
free-living micro-organisms. This view has been reinforced
by some field studies of eukaryotes.
However, recent research suggests that at least some
bacterial taxa can exhibit biogeographical patterns. For
example, 258 isolates of the bacterial genus Pseudomonas
from 10 sites on four continents. They analysed the isolates
using three molecular methods that provided different
levels of resolution. At the finest level of resolution, there
was a statistically significant association between genotype
and geographical distance, with evidence of migration
within sites but not between sites.
Similarly, a recent survey of the genetic diversity of
cyanobacterial communities from thermal springs in North
America, Japan, New Zealand and Italy showed that
geographical isolation was present at both global and local
(km) spatial scales. The strongest evidence to date for
biogeographical patterns in prokaryotic organisms comes
from a recent study of the hotspring archaean Sulfolobus.
The genetic diversity of Sulfolobus isolates from five
geographically distinct regions and found a significant
correlation between genetic distance and geographical
distance.
The rates of speciation, extinction and dispersal-the
three fundamental processes responsible for producing
biogeographical patterns-relative to the other factors are
likely candidates. A preliminary understanding of these
three processes for bacteria.
186 Ecology and Biodiversity
Dispersal
Some bacteria have the potential for very high rates of
dispersal. It is known that bacteria can be dispersed
passively in the atmosphere and through water owing to
their small size. In addition, some bacteria, such as
members of the genus Bacillus, can form hardy life stages
that are highly resistant to environmental stresses such as
desiccation; such stages could allow these organisms to
disperse widely. However, few studies have been able to
quantify even relatively small-scale dispersal and
colonisation rates. There is some evidence that some
bacterial taxa may have wide distributions, suggesting that
rates of dispersal are high.
However, most of these studies use taxon definitions
based on sequence similarity of the 16S ribosomal gene, a
very conservative definition; sequences from protein-
coding genes may provide greater resolution and be more
appropriate for inferring rates of dispersal.Only one study
that used protein-coding genes to infer dispersal rates in
free-living bacteria. The populations were sampled at
geographical scales ranging from 30 to 10 000 km.
The magnitude of the migration rate was generally
associated with geographical scale (migration was highest
between the closest sites). However, even at the largest
scale, where migration rates were lowest, the rate of
exchange was sufficient to prevent neutral geographical
evolutionary divergence (Le. the most distant populations
were not isolated enough to demonstrate genetic drift).
Speciation
The influx of new species in a given area is the product
of both dispersal and local speciation. Speciation requires
variation in both ecologically relevant traits and ecological
opportunity, and the rate of speciation may be
substantially higher in bacteria than in larger organisms
Bacterial Biodiversity 187
Extinction
Bacterial diversity may also be high owing to potentially
low extinction rates. The large population sizes assumed
for many micro-organisms may make extinction less likely.
Extinction rates may' also be relatively low for bacteria
because some bacteria have traits that allow them to
reduce the risk of catastrophic losses typical of extinction
events in plants and animals. For example, some bacteria
are known to form life stages that can survive harsh
environmental extremes, reducing the probability that
chance fluctuations in environmental conditions will drive
them to extinction.
High dispersal rates over large distances may also
reduce the chance that local environmental change will
result in extinction. Some bacteria are also able to avoid
the negative effects of competitive interactions; for
example, resistance to starvation has been documented for
some species in the laboratory. It is not clear how
widespread the traits discussed in the previous paragraph
are among bacterial taxa (and thus how likely it is that
extinction rates are actually lower for bacteria than for
other organisms such as plants and animals), and there
are no direct measures of extinction rates for bacteria in
the field.
However, it should be possible to determine whether
the relative magnitude of speciation and extinction is
different for bacteria relative to other organisms. For
example, the difference between speciation and extinction
can be estimated from gene phylogenies via lineage-
through-time plots. This comparison has not yet been
attempted.
11
Ecological Forecasting and the
Urbanisation of Stream Ecosystems
ECOLOGICAL FORECASTS
Economic Forecasts
In understanding the impact of urbanisation on watershed
ecology, economics can provide a translation betwe~n
policy actions and regional economic forces on the one
hand and local land-use outcomes on the other. To forecast
future outcomes, here explain why firms and households
make the land-use decisions they do. Because they both
contribute to and respond to market signals, part (It the
economist's task is to understand how lanu mClrkd~ and
the markets for related goods and services operate.
Economists must also understand how regulation and
other types of intervention by government entities alter
these signals. Currently, economic forecasting is limited
by difficulties in projecting supply and demand functions
into the future, particularly in the face of new public
policies (for example, minimum lot sizes), and by
difficulties in producing spatially explicit predictions at
scales relevant to ecologists. Consider the task of
explaining "simply" the change in the aggregate amount
of residential land use likely to occur in a small, specific
watershed over the next 20 years.
Here choose a mid-Atlantic landscape where
residential land use represents over 90% of the developed
land in the watershed. The horizontal axis measures the
amount of new land demanded annually by the residential
sector; the price of that land is measured along the vertical
axis. The actual amount converted is depicted by the
intersection of the supply and demand functions.
To forecast how much land will be converted in a
year, the location of these two functions needs to be
forecast. Estimates of these functions exist for many
Ecological Forecasting and the Urbanisation of . . . . 193
Land
PriCe
Amount of UiIId
e,,-.-..
Figure 2. The supply of new land and the demand for it are r(,glliated by
land prices. The balance point between supply and demand is g(lvt'rned by
the market price.
Land-cover Descriptions
The rapid development of Geographic Information System
(GIS), which accompanied the emergence of landscape
ecology, has enabled ecological research that was
unimaginable only 2 decades ago. These techniques have
been particularly useful at large spatial scales, but their
linkage to smaller-scale pattern and process-such as those
of interest in single, small streams-remains problematic.
Many of the limitations of using GIS-based land-cover
descriptions to make ecological predictions stem from
resolution and interpretation; they include difficulties in
estimating the size of riparian zones and wetlands,
underestimating the heterogeneity of land-use types, and
dealing with the occurrence of software errors. If the data
are in raster format, the resolution is defined by the pixel
size; whereas if the data are in vector format, it is defined
by some minimum mapping unit.
Unfortunately, the linear nature of most stream
channels makes it difficult, in terms of resolution, to
document the land changes that directly affect the fate of
streams and rivers. The riparian zone is an extremely
diverse habitat and an important determinant of the biota
in the river channel. The width of these zones directly
affects species richness; the amount of leaf litter
production; the stream's buffering capacity, particularly
with respect to nutrient removal; and organism dispersal.
For all these reasons, quantification of the width of
the riparian zone is a high priority in forecasting changes
related to land use. Unfortunately, unless this zone is very
wide, the resolution of remotely sensed data is usually too
coarse to aid in the determination of the width of the
riparian zone. One of the basic steps in documenting
landscape change is to assign land-cover classes to patches
on remotely sensed images. The definition of landcover
categories and the determination of their spatial extent
196 Ecology and Biodiversity
Channel Form
Ecological Models
To forecast land-use effects on species diversity and
nutrient dynamics in streams, it is critical that some
knowledge of the relationship between land use and the
dependent variables of interest. Because so much land-use
change has already occurred, here should be able to draw
on existing information, such as time series data for species
Ecological Forecasting and the Urbanisation of· ... 205
Species diversity
Current knowledge of species distributions in running
waters is quite uneven because of biases in the selection
of which organisms are sampled, where the sampling is
done, and the spatial and temporal extent of the sampling
effort. For example, fish (especially game fish) are widely
surveyed by resource management agencies and therefore
probably represent the best source of information about
species distributions and abundances.
Yet data for many other groups are rare or
nonexistent (for example, there is a paucity of data for
invertebrates and even for riparian plants). Further, the
data that are collected may not be disseminated because
of security reasons (for example, information about
threatened species). In other cases, data may be hard to
find because the existence of many databases is not
publicised. For example, in some countries hydrologic data
are collected by many different agencies that rarely
communicate with each other.
Limitations due to the paucity of accessible data are
even further constrained by the spatial and temporal extent
over which most data are collected. Many ecological
studies are snapshots in time (1-2 years) conducted at small
spatial scales-often 1 m 2 and consider only one or two
species at a time. Studies that are spatially extensive
usually consist of a single, temporally unreplicated
inventory, even for conspicuous aquatic taxa such as fish
or riparian vegetation.
206 Ecology and Biodiversity
MECHANISTIC MODELS
TIME PRINCIPLE
SPECIES PRINCIPLE
PLACE PRINCIPLE
DISTURBANCE PRINCIPLE
LANDSCAPE PRINCIPLE
TAXONOMY OF POPULATIONS
Evolutionary Unit
Evolutionary units (EUs) are populations with independent
evolutionary dynamics. Thus, a classic Mendelian
population (a reproductive community of sexual and cross-
fertilizing individuals which share a common gene pool)
is an EU. Using neutral loci will generally circumscribe
larger EUs than would using loci under strong,
geographically varying selection. An example of EUs is
the island populations of various plant species (from the
Family Asteraceae) that evolved different diaspore
morphology and reduced dispersal ability, compared with
the mainland populations from which they originated.
Demographic Unit
Demographic units (DUs) are populations with
independent demographic dynamics. In general,
populations that fluctuate in size asynchronously, or are
shown to have only a few (or no) migrants pass between
them, should be considered DUs. A classic example of a
set of DUs is the now-extinct three populations of the
checkerspot butterfly Euphydryas editha in the Jasper
Ridge Biological Reserve of Stanford University. They had
asynchronous dynamics and delineating the DUs was
crucial to understanding those dynamics. Local
populations in metapopulations are ordinarily DUs, but
DUs are not necessarily elements of metapopulations.
Conservation Unit
The designation of conservation units (CUs) will depend
on the associated conservation goals, which vary
tremendously. Goals oriented around evolution typically
involve maintaining the genetic diversity of a species, or
the potential for future genetic divergence or speciation.
232 Ecology and Biodiversity
Service-Providing Unit
The delineation of a service-providing unit (SPU) will vary
depending on the ecosystem service being considered, and
any temporal or spatial variation inherent in the species
of interest and the service itself. For example, the entire
population of a given tree speciesmight provide the global
service of carbon sequestration. Regional populations of
the same tree species might provide a water filtration
Population Diversity 233
\1>'1
Population Richness
Population richness is the number of populations of a
species in a given area, which depends on the criteria used
to delineate population boundaries. When the focus is on
ecosystem services, we propose using as a criterion the
spatial disjunctions in the services provided by conspecific
individuals occupying a heterogeneous environment (i.e.
SPUs). If the required data are unavailable, standard
genetic or demographic approaches would be the next best
option.
Population Size
Data about the number of individuals per population
provide an indication of the frequency distribution of
population sizes. Absolute numbers would be the most
useful, but, owing to the difficulty of obtaining such
information, orders of magnitude or some other
representative measure might be more appropriate. It is
important to document the distribution of population sizes
to determine whether a species is characterised by, for
example, a single large population and many small
populations, or several similarly sized populations.
This distribution has implications, not only for species
conservation, but also for the contribution that each
population makes to the functioning of ecosystems, and
raises the important issue of how variability in the number
of individuals in a given population affects functi6nality.
For ubiquitous species for which discrete populations
cannot be identified, variability in population density
might be a useful surrogate.
Examples in which pollination services are disrupted
when the population size falls below a certain level.
Moreover, they also show how changes in population
density (for plants or pollinators) can alter pollination
236 Ecology and Biodiversity
Population Distribution
The third component of population diversity is the spatial
distribution of the populations under study. The important
measures here are the extent of the populations relative
to their maximum possible extent in a defined area, and
population dispersion. Focusing on maximum possible
extent facilitates comparisons between species with large
geographical ranges and those with relatively restricted
ranges.
Geographical range is a measure of the maximum
area in which a species can provide a given service. An
assessment of population extent might consider, for
example, the number of sites that populations occupy
relative to all possible sites available for occupancy. This
would be applicable in landscapes in which populations
are tied to spatially discrete habitat patches and it is
relatively easy to identify suitable, but currently
unoccupied patches.
If data are available, the current extent of populations
could also be compared with the historic geographical
Population Diversity 237
BIODIVERSITY DECLINE
NATURAL MICROCOSMS
BIODIVERSITY-ECOSYSTEM FUNcnON
Clusler of
pitcher plants
Bog