Professional Documents
Culture Documents
APLIKOM
APLIKOM
NIM : 16030234035
Reaksi Esterefikasi
Atom Bond Bond Angle Angle (0) 2nd Angle 2nd Angle 2nd Angle
Atom Lenght Atom Atom Type
(A)
C(4)
C(2) C(4) 1.5090
O(7) C(4) 1.3380 C(2) 120.0000
O(6) C(4) 1.2080 C(2) 120.0000 O(7) 120.0000 Pro-R
H(1) C(2) 1.1130 C(4) 109.4418 O(6) 180.0000 Dihedral
H(3) C(2) 1.1130 C(4) 109.4418 H(1) 109.5000 Pro-S
H(5) C(2) 1.1130 C(4) 109.5200 H(1) 109.4618 Pro-R
H(8) O(7) 0.9720 C(4) 120.0000 C(2) 180.0000 Dihedral
C(10) O(6) 5.6305 C(4) 158.9964 C(2) 34.0069 Dihedral
C(13) C(10) 1.5230 C(4) 102.9299 C(2) -65.2890 Dihedral
C(16) C(13) 1.5230 C(10) 109.4618 C(4) -111.6081 Dihedral
O(19) C(16) 1.4020 C(13) 109.4618 C(10) -59.9996 Dihedral
H(14) C(13) 1.1130 C(10) 109.5000 C(16) 109.4618 Pro-S
H(15) C(13) 1.1130 C(10) 109.4418 C(16) 109.5200 Pro-R
H(17) C(16) 1.1130 C(13) 109.5000 O(19) 109.4618 Pro-R
H(18) C(16) 1.1130 C(13) 109.4418 O(19) 109.5200 Pro-S
H(9) C(10) 1.1130 C(13) 109.4618 C(16) -120.0004 Dihedral
H(11) C(10) 1.1130 C(13) 109.4618 H(9) 109.5000 Pro-R
H(12) C(10) 1.1130 C(13) 109.5200 H(9) 109.4418 Pro-S
H(20) O(19) 0.9420 C(16) 120.0000 C(13) -180.0000 Dihedral
- Setelah di MM2
Atom Bond Bond Angle Angle (0) 2nd Angle 2nd Angle 2nd Angle
Atom Lenght Atom Atom Type
(A)
C(4)
C(2) C(4) 1.5090
O(7) C(4) 1.3380 C(2) 120.0000
O(6) C(4) 1.2080 C(2) 120.0000 O(7) 120.0000 Pro-R
H(8) O(7) 0.9720 C(4) 120.0000 C(2) 180.0000 Dihedral
Lp(21) O(7) 0.6000 C(4) 129.2205 H(8) 110.6795 Pro-S
Lp(22) O(7) 0.6000 C(4) 30.5259 H(8) 89.4741 Pro-S
H(1) C(2) 1.1130 C(4) 109.4418 O(6) 180.0000 Dihedral
C(10) O(6) 5.4821 C(4) 158.6596 C(2) 34.4566 Dihedral
H(3) C(2) 1.1130 C(4) 109.4418 H(1) 109.5000 Pro-S
H(5) C(2) 1.1130 C(4) 109.5200 H(1) 109.4618 Pro-R
C(13) C(10) 1.5230 C(4) 102.7765 C(2) -65.3891 Dihedral
C(16) C(13) 1.5230 C(10) 109.4618 C(4) -111.4216 Dihedral
O(19) C(16) 1.4020 C(13) 109.4618 C(10) -59.9996 Dihedral
H(9) C(10) 1.1130 C(13) 109.4618 C(16) -120.0004 Dihedral
H(14) C(13) 1.1130 C(10) 109.5000 C(16) 109.4618 Pro-S
H(15) C(13) 1.1130 C(10) 109.4418 C(16) 109.5200 Pro-R
H(11) C(10) 1.1130 C(13) 109.4618 H(9) 109.5000 Pro-R
H(12) C(10) 1.1130 C(13) 109.5200 H(9) 109.4418 Pro-S
H(17) C(16) 1.1130 C(13) 109.5000 O(19) 109.4618 Pro-R
H(18) C(16) 1.1130 C(13) 109.4418 O(19) 109.5200 Pro-S
H(20) O(19) 0.9420 C(16) 120.0000 C(13) -180.0000 Dihedral
Lp(23) O(19) 0.6000 C(16) 106.7597 H(20) 106.7597 Pro-S
Lp(24) O(19) 0.6000 C(16) 103.2984 H(20) 103.2984 Pro-R
------------MM2 Minimization------------
Warning: The number of ligands attached does not match the geometry of O(7)
Warning: The number of ligands attached does not match the geometry of C(16)
Note: 1,3 van der Waals interactions are used to compute the energy of angles around atoms with
more than 4 coordinate bonds.
Iteration 87: Minimization terminated normally because of an insignificant change in the varying
measurements
Stretch: 45.1159
Bend: 187.1408
Stretch-Bend: -0.1497
Torsion: 7.7850
Dipole/Dipole: 2.6422
Calculation completed
Atom Bond Bond Angle Angle (0) 2nd Angle 2nd Angle 2nd Angle
Atom Lenght Atom Atom Type
(A)
C(4)
C(2) C(4) 1.5090
O(7) C(4) 1.3380 C(2) 120.0000
O(6) C(4) 1.2080 C(2) 120.0000 O(7) 120.0000 Pro-R
H(1) C(2) 1.1130 C(4) 109.4418 O(6) 180.0000 Dihedral
H(3) C(2) 1.1130 C(4) 109.4418 H(1) 109.5000 Pro-S
H(5) C(2) 1.1130 C(4) 109.5200 H(1) 109.4618 Pro-R
H(8) O(7) 0.9720 C(4) 120.0000 C(2) 180.0000 Dihedral
C(10) O(6) 5.4821 C(4) 158.6596 C(2) 34.4566 Dihedral
C(13) C(10) 1.5230 C(4) 102.7765 C(2) -65.3891 Dihedral
C(16) C(13) 1.5230 C(10) 109.4618 C(4) -111.4216 Dihedral
O(19) C(16) 1.4020 C(13) 109.4618 C(10) -59.9996 Dihedral
H(14) C(13) 1.1130 C(10) 109.5000 C(16) 109.4618 Pro-S
H(15) C(13) 1.1130 C(10) 109.4418 C(16) 109.5200 Pro-R
H(17) C(16) 1.1130 C(13) 109.5000 O(19) 109.4618 Pro-R
H(18) C(16) 1.1130 C(13) 109.4418 O(19) 109.5200 Pro-S
H(9) C(10) 1.1130 C(13) 109.4618 C(16) -120.0004 Dihedral
H(11) C(10) 1.1130 C(13) 109.4618 H(9) 109.5000 Pro-R
H(12) C(10) 1.1130 C(13) 109.5200 H(9) 109.4418 Pro-S
H(20) O(19) 0.9420 C(16) 120.0000 C(13) -180.0000 Dihedral
- Sesudah di MM2
Atom Bond Bond Angle Angle (0) 2nd Angle 2nd Angle 2nd Angle
Atom Lenght Atom Atom Type
(A)
C(4)
C(2) C(4) 1.5090
O(7) C(4) 1.3380 C(2) 120.0000
O(6) C(4) 1.2080 C(2) 120.0000 O(7) 120.0000 Pro-R
H(8) O(7) 0.9720 C(4) 120.0000 C(2) 180.0000 Dihedral
Lp(21) O(7) 0.6000 C(4) 125.7998 H(8) 114.1765 Pro-S
Lp(22) O(7) 0.6000 C(4) 30.5259 H(8) 89.4741 Pro-S
H(1) C(2) 1.1130 C(4) 109.4418 O(6) 180.0000 Dihedral
C(10) O(6) 5.4821 C(4) 158.6596 C(2) 34.4566 Dihedral
H(3) C(2) 1.1130 C(4) 109.4418 H(1) 109.5000 Pro-S
H(5) C(2) 1.1130 C(4) 109.5200 H(1) 109.4618 Pro-R
C(13) C(10) 1.5230 C(4) 102.7765 C(2) -65.3891 Dihedral
C(16) C(13) 1.5230 C(10) 109.4618 C(4) -111.4216 Dihedral
O(19) C(16) 1.4020 C(13) 109.4618 C(10) -59.9996 Dihedral
H(9) C(10) 1.1130 C(13) 109.4618 C(16) -120.0004 Dihedral
H(14) C(13) 1.1130 C(10) 109.5000 C(16) 109.4618 Pro-S
H(15) C(13) 1.1130 C(10) 109.4418 C(16) 109.5200 Pro-R
H(11) C(10) 1.1130 C(13) 109.4618 H(9) 109.5000 Pro-R
H(12) C(10) 1.1130 C(13) 109.5200 H(9) 109.4418 Pro-S
H(17) C(16) 1.1130 C(13) 109.5000 O(19) 109.4618 Pro-R
H(18) C(16) 1.1130 C(13) 109.4418 O(19) 109.5200 Pro-S
H(20) O(19) 0.9420 C(16) 120.0000 C(13) -180.0000 Dihedral
Lp(23) O(19) 0.6000 C(16) 106.7597 H(20) 106.7597 Pro-S
Lp(24) O(19) 0.6000 C(16) 103.2984 H(20) 103.2984 Pro-R
------------MM2 Minimization------------
Warning: The number of ligands attached does not match the geometry of O(7)
Warning: The number of ligands attached does not match the geometry of H(8)
Warning: The number of ligands attached does not match the geometry of H(20)
Note: 1,3 van der Waals interactions are used to compute the energy of angles around atoms with
more than 4 coordinate bonds.
Iteration 2516: Minimization terminated normally because the gradient norm is less than the
minimum gradient norm
Stretch: 242.8058
Bend: 2611.5732
Stretch-Bend: -20.3114
Torsion: 0.2722
Non-1,4 VDW: -1.8151
Note: Due to high VDW interactions, some terms were not computed.
Calculation completed
Atom Bond Bond Angle Angle (0) 2nd Angle 2nd Angle 2nd Angle
Atom Lenght Atom Atom Type
(A)
C(4)
C(2) C(4) 1.5090
O(7) C(4) 1.3380 C(2) 120.0000
O(6) C(4) 1.2080 C(2) 120.0000 O(7) 120.0000 Pro-R
H(1) C(2) 1.1130 C(4) 109.4418 O(6) 180.0000 Dihedral
H(3) C(2) 1.1130 C(4) 109.4418 H(1) 109.5000 Pro-S
H(5) C(2) 1.1130 C(4) 109.5200 H(1) 109.4618 Pro-R
H(8) O(7) 0.9720 C(4) 120.0000 C(2) 180.0000 Dihedral
C(10) O(6) 5.4821 C(4) 158.6596 C(2) 34.4566 Dihedral
C(13) C(10) 1.5230 C(4) 102.7765 C(2) -65.3891 Dihedral
C(16) C(13) 1.5230 C(10) 109.4618 C(4) -111.4216 Dihedral
O(19) C(16) 1.4020 C(13) 109.4618 C(10) -59.9996 Dihedral
H(14) C(13) 1.1130 C(10) 109.5000 C(16) 109.4618 Pro-S
H(15) C(13) 1.1130 C(10) 109.4418 C(16) 109.5200 Pro-R
H(17) C(16) 1.1130 C(13) 109.5000 O(19) 109.4618 Pro-R
H(18) C(16) 1.1130 C(13) 109.4418 O(19) 109.5200 Pro-S
H(9) C(10) 1.1130 C(13) 109.4618 C(16) -120.0004 Dihedral
H(11) C(10) 1.1130 C(13) 109.4618 H(9) 109.5000 Pro-R
H(12) C(10) 1.1130 C(13) 109.5200 H(9) 109.4418 Pro-S
H(20) O(19) 0.9420 C(16) 120.0000 C(13) -180.0000 Dihedral
- Sesudah di MM2
Cartesian Table of Molecule “transition Energy”
Atom Bond Bond Angle Angle (0) 2nd Angle 2nd Angle 2nd Angle
Atom Lenght Atom Atom Type
(A)
C(4)
C(2) C(4) 1.5090
O(7) C(4) 1.3380 C(2) 120.0000
O(6) C(4) 1.2080 C(2) 120.0000 O(7) 120.0000 Pro-R
H(8) O(7) 0.9720 C(4) 120.0000 C(2) 180.0000 Dihedral
Lp(21) O(7) 0.6000 C(4) 106.7597 H(8) 106.7597 Pro-S
Lp(22) O(7) 0.6000 C(4) 103.2984 H(8) 103.2984 Pro-R
H(1) C(2) 1.1130 C(4) 109.4418 O(6) 180.0000 Dihedral
C(10) O(6) 5.4821 C(4) 158.6596 C(2) 34.4566 Dihedral
H(3) C(2) 1.1130 C(4) 109.4418 H(1) 109.5000 Pro-S
H(5) C(2) 1.1130 C(4) 109.5200 H(1) 109.4618 Pro-R
C(13) C(10) 1.5230 C(4) 102.7765 C(2) -65.3891 Dihedral
C(16) C(13) 1.5230 C(10) 109.4618 C(4) -111.4216 Dihedral
O(19) C(16) 1.4020 C(13) 109.4618 C(10) -59.9996 Dihedral
H(9) C(10) 1.1130 C(13) 109.4618 C(16) -120.0004 Dihedral
H(14) C(13) 1.1130 C(10) 109.5000 C(16) 109.4618 Pro-S
H(15) C(13) 1.1130 C(10) 109.4418 C(16) 109.5200 Pro-R
H(11) C(10) 1.1130 C(13) 109.4618 H(9) 109.5000 Pro-R
H(12) C(10) 1.1130 C(13) 109.5200 H(9) 109.4418 Pro-S
H(17) C(16) 1.1130 C(13) 109.5000 O(19) 109.4618 Pro-R
H(18) C(16) 1.1130 C(13) 109.4418 O(19) 109.5200 Pro-S
H(20) O(19) 0.9420 C(16) 120.0000 C(13) -180.0000 Dihedral
Lp(23) O(19) 0.6000 C(16) 106.7597 H(20) 106.7597 Pro-S
Lp(24) O(19) 0.6000 C(16) 103.2984 H(20) 103.2984 Pro-R
------------MM2 Minimization------------
Warning: The number of ligands attached does not match the geometry of H(8)
Warning: The number of ligands attached does not match the geometry of H(20)
Iteration 751: Minimization terminated normally because of an insignificant change in the varying
measurements
Stretch: 2.7713
Bend: 121.2372
Stretch-Bend: -0.3203
Torsion: -0.0092
Dipole/Dipole: 2.9892
Calculation completed
2. Perhitungan menggunakan metode HF
a. Menghubungkan Atom O(7) dengan C(16)
Dari tabel energy ikatan rata – rata diatas dapat digunakan untuk menghitung/menentukan nilai
energi transisi dari molekul diatas.
a. Menghubungkan Atom O(7) dengan C(16)
40800:00:00 1736.4
40320:00:00
39840:00:00
39360:00:00 Energi Akhir
Energi Awal
38880:00:00 1650,8
1650,8
38400:00:00
1 2 3
Waktu
Perbandingan Energi pada perhitungan metode HF
Energi awal(reaktan) = |-142152.079357 + -120508.484611 | = 262660.563968 Kcal/Mol
Energy akhir(produk) = |-215229.849505 + -47430.866523 |= 262660.716028 Kcal/Mol
ΔHf = Energi Produk – Energi Awal
= 262660.716028 - 262660.563968 Kcal/Mol
= 0.15206 Kcal/Mol
Energi Aktivasi =|Energi transisi terendah – energy awal|
= 238297.230378 - 238299.5308
= 2.300422 Kcal/Mol
Energi transisi 1 : 262657.610434 Kcal/Mol
Energi transisi 2 : 262655.625913 Kcal/Mol
Energi transisi 3 : 262655.625729 Kcal/Mol
262662
HF
Energi Awal Energi akhir
262661
262660
262659
Energi
262658
262657
Energi Transisi
262656
262655
262654
262653
1 2 3
Waktu
Perbandingan Energi pada perhitungan Metode DFT
Energi awal : |-142879.415297 + -121208.636377| = 264088.051674 Kcal/Mol
Energy akhir : |-216435.319214 + -47650.983816|= 264086.30303 Kcal/Mol
ΔHf = Energi Produk – EnergiAwal
= 264086.30303 – 264088.051674 Kcal/Mol
= -1.748644 Kcal/Mol
Energi Aktivasi = |Energi transisi terendah – energy awal
= 264088.051674 – 264083.975604 Kcal/Mol
= 4.07607 Kcal/Mol
Energi transisi 1 : 264084.002662 Kcal/Mol
Energi transisi 2 : 264083.975886 Kcal/Mol
Energi transisi 3 : 264083.975604 Kcal/Mol
DFT
Energi Awal
264089 264088.0517
264088
Energi Akhir
264087 264086.303
Energi Kcal/mol
264086
264085
264084
264083 Energi Transisi
264083.9756
264082
264081
1 2 3
Waktu
Perbandingan Energi pada perhitungan metode MM2
Energiawal(reaktan) = |7.0548 + 0.0289 | = 7.0837 Kcal/Mol
Energy akhir(produk) = |-1.7485 + 2.6167 | = 0.8682 Kcal/Mol
ΔHf = EnergiProduk – EnergiAwal
= 0.8682 - 7.0837 Kcal/Mol
= - 6.2155 Kcal/Mol
Energi Aktivasi =|Energi transisi terendah – energy awal|
= 144.3225 – 7.0837 Kcal/Mol
= 137.2388 Kcal/Mol
Energi transisi 1 : 258.7703 Kcal/Mol
Energi transisi 2 : 2849.0349 Kcal/Mol
Energi transisi 3 : 144.3225 Kcal/Mol
MM2
160 Energi Transisi
144.3225
140
120
Energi Kcal/mol
100
80
60
40 Energi Awal 7.0837 Energi Akhir
20 0.8682
0
1 2 3
Waktu