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Delatado 08-08-2018
8 - Sampaguita
Submitted To: Mr. Eric U. Bermal
Positively and negatively charged amino acids often form so called salt bridges. These interactions
may be important for the stabilization of the protein three-dimensional structure - for example
proteins from thermophilic organisms (organisms that live at elevated temperatures, up 80-90 deg C,
or even higher) often have an extensive network of salt bridges on their surface, which contributes to
the thermostability of these proteins, preventing their denaturation at high temperatures.
The preferred location of different amino acids in protein molecules can be characterized by calculating
the extent by which an amino acid is buried in the structure or exposed to solvent. Below you can see
a figure showing the distribution of the different amino acids within protein molecules:
While hydrophobic amino acids are mostly buried within the core of the structure, a smaller fraction of
polar groups are found to be buried. Charged residues are exposed to solvent to a much higher
degree.
The vertical axis shows the fraction of highly buried residues, while the horizontal axis shows the
amino acid names in one-letter code.
Taken from the tutorial by J.E. Wampler,