Brain Tumor Segmentation using Convolutional Neural Network on

MRI Images

Source code:
function varargout = mainmenu(varargin)
gui_Singleton = 1;
gui_State = struct('gui_Name', mfilename, ...
'gui_Singleton', gui_Singleton, ...
'gui_OpeningFcn', @mainmenu_OpeningFcn, ...
'gui_OutputFcn', @mainmenu_OutputFcn, ...
'gui_LayoutFcn', [] , ...
'gui_Callback', []);
if nargin && ischar(varargin{1})
gui_State.gui_Callback = str2func(varargin{1});
end

if nargout
[varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});
else
gui_mainfcn(gui_State, varargin{:});
end
% End initialization code - DO NOT EDIT

% --- Executes just before mainmenu is made visible.

function mainmenu_OpeningFcn(hObject, eventdata, handles, varargin)
% This function has no output args, see OutputFcn.
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% varargin command line arguments to mainmenu (see VARARGIN)

% Choose default command line output for mainmenu

handles.output = hObject;

% Update handles structure

guidata(hObject, handles);

% UIWAIT makes mainmenu wait for user response (see UIRESUME)

% uiwait(handles.figure1);

% --- Outputs from this function are returned to the command line.
function varargout = mainmenu_OutputFcn(hObject, eventdata, handles)
% varargout cell array for returning output args (see VARARGOUT);
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)

% Get default command line output from handles structure

varargout{1} = handles.output;

% --- Executes on button press in pushbutton1.

function pushbutton1_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
global Input_Image

global Input1

[filename pathname id] = uigetfile({'* .jpg'},'Select input image',[cd

'\images']);
if ~id,return,end
Input1 = double(imread([pathname filename]))/255;
Input_Image = double(imread([pathname filename]))/255;

fullpathname = strcat(pathname,filename);
text=fileread(fullfile(pathname, filename));
% disp(fullpathname);
axes(handles.axes1);
imshow(Input_Image)
handles.ImgData = Input_Image;
set(handles.edit1,'string',fullpathname);

function edit1_Callback(hObject, eventdata, handles)

% hObject handle to edit1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'String') returns contents of edit1 as text

% str2double(get(hObject,'String')) returns contents of edit1 as a
double

% --- Executes during object creation, after setting all properties.

function edit1_CreateFcn(hObject, eventdata, handles)
% hObject handle to edit1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called

% Hint: edit controls usually have a white background on Windows.

% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'),
get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end

% --- Executes on button press in pushbutton10.

function pushbutton10_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton10 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
global ip_img;
global IMG
global Input_Image;

ip_img=Input_Image;

IMG=double(rgb2gray(ip_img));
CLM = 2;
[ IN, CEN, NOF ] = SUB_FUN8( IMG, CLM );
lb = zeros(2,1);

figure;
subplot(1,3,1);
imshow(IMG,[]);
for i=1:CLM

subplot(1,3,i+1);

imshow(IN(:,:,i),[]);
end

% --- Executes on button press in pushbutton11.

function pushbutton11_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton11 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)

% --- Executes on button press in pushbutton2.

function pushbutton2_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton2 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
global Input_Image1
global I
out2 = imadjust(Input_Image1,[.3; .9],[]);
axes(handles.axes2);
imshow(out2)
EN_IP=Input_Image1;
E = entropyfilt(EN_IP);

EN_INP = mat2gray(E);
axes(handles.axes2);
imshow(EN_INP);

BW1 = im2bw(EN_INP, .8);

axes(handles.axes2);

imshow(BW1);
axes(handles.axes2);
imshow(EN_IP);

BW_OP = bwareaopen(BW1,2000);
axes(handles.axes2);
imshow(BW_OP);

nhood = true(9);
C_BW = imclose(BW_OP,nhood);
imshow(C_BW)

R_M = imfill(C_BW,'holes');

imshow(R_M);
axes(handles.axes2);
imshow(EN_IP);

SRT = EN_IP;
SRT(R_M) = 0;
axes(handles.axes2);
imshow(SRT);

EN_INP2 = entropyfilt(SRT);
E_INP2 = mat2gray(EN_INP2);
axes(handles.axes2);
imshow(E_INP2);

BW_IN = im2bw(E_INP2,graythresh(E_INP2));

axes(handles.axes2);
imshow(BW_IN)
axes(handles.axes2);
imshow(EN_IP);
MSK = bwareaopen(BW_IN,1000);
axes(handles.axes2);
imshow(MSK);

TXT1 = EN_IP;
TXT1(~MSK) = 0;
TXT2 = EN_IP;
TXT2(MSK) = 0;

axes(handles.axes2);
imshow(TXT1);
axes(handles.axes2);
imshow(TXT2);
boundary = bwperim(MSK);
SMNT_RST = EN_IP;
SMNT_RST(boundary) = 255;
axes(handles.axes2);
imshow(SMNT_RST);

SM = stdfilt(EN_IP,nhood);
axes(handles.axes2);
imshow(mat2gray(SM));

RS = rangefilt(EN_IP,ones(5));
axes(handles.axes2);
imshow(RS);

% --- Executes on button press in pushbutton3.

function pushbutton3_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton3 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
global Input_Image;
global level;
global bw;

global img2;

level=0.2;
I = Input_Image;

gray = rgb2gray(I);
% Otsu Binarization for segmentation
level = graythresh(I);
%gray = gray>80;
img = im2bw(I,.6);
img = bwareaopen(img,80);
img2 = im2bw(I);
% Try morphological operations
%gray = rgb2gray(I);
%tumor = imopen(gray,strel('line',15,0));

axes(handles.axes2)
imshow(img);

bw = im2bw(Input_Image, graythresh(Input_Image));

bw = bwareaopen(bw, 50);

L = bwlabel(bw);
s = regionprops(L,'PixelIdxList');

max_value = zeros(numel(s), 1);

for k = 1:numel(s)
max_value(k) = max(Input_Image(s(k).PixelIdxList));
end
bright_objects = find(max_value > 200)

s=bwarea(bright_objects)

level=0.2;
IMG_CONV = im2bw(Input_Image, graythresh(Input_Image));

IMG_CONV = bwareaopen(IMG_CONV, 100);

BW_DTC = bwlabel(IMG_CONV);
RGN_SEG = regionprops(BW_DTC,'PixelIdxList');

% Initialize vector containing max values.

max_value = zeros(numel(RGN_SEG), 1);
for INP = 1:numel(RGN_SEG)
max_value(INP) = max(Input_Image(RGN_SEG(INP).PixelIdxList));
end

BRT_OBJ = find(max_value < 200)

RGN_SEG=bwarea(BRT_OBJ)

guidata(hObject, handles);

if (bright_objects==1)
uiwait(msgbox('The segmented Image is Normal'));
else (bright_objects==2)

uiwait( msgbox('The segmented Image is Affected '));

end

% --- Executes on button press in pushbutton4.

function pushbutton4_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton4 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
global Input_Image
global Input_Image1

Input_Image = Input_Image+0.01*randn(size(Input_Image));
Input_Image(Input_Image<0) = 0; Input_Image(Input_Image>1) = 1;
D = 2;
SIG = [7 0.4];

Input_Image1 = DATA(Input_Image,D,SIG);

scale = 1e10;
J = scale * imnoise(Input_Image1/scale, 'poisson');

axes(handles.axes2);
imshow(J);

% --- Executes on button press in pushbutton5.

function pushbutton5_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton5 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
global Input_Image1
axes(handles.axes2);
imshow(Input_Image1);

% --- Executes on button press in pushbutton8.

function pushbutton8_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton8 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
global Input_Image;

IMG=rgb2gray(Input_Image);

axes(handles.axes2);
imshow(IMG);

% --- Executes on button press in pushbutton9.

function pushbutton9_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton9 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
global Input_Image1
Img_hist

IMG_RZ=imresize(Input_Image1,[500 500]);

IMG_RZ=im2double(IMG_RZ);
level=0.8;

INP = im2bw(IMG_RZ,(level+(.009)));
INP=~INP;
CN_EG=edge(INP,'prewitt');
TG_IMG=CN_EG&INP;

% --- Executes on button press in pushbutton12.

function pushbutton12_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton12 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
global img2
analysis

Data.m

function B = DATA(Input_Image,D,SIG)

if ~exist('Input_Image','var') || isempty(Input_Image)
error('Input image Input_Image is undefined or invalid');
end
if ~isfloat(Input_Image) || ~sum([1,3] == size(Input_Image,3)) || ...
min(Input_Image(:)) < 0 || max(Input_Image(:)) > 1
error(['Input image Input_Image must be a double precision ',...
'matrix of size NxMx1 or NxMx3 on the closed ',...
'interval [0,1].']);
end

if ~exist('w','var') || isempty(D) || ...

numel(D) ~= 1 || D < 1
D = 5;
end
D = ceil(D);

if ~exist('sigma','var') || isempty(SIG) || ...

numel(SIG) ~= 2 || SIG(1) <= 0 || SIG(2) <= 0
SIG = [3 0.1];
end

if size(Input_Image,3) == 1
B = BGRY(Input_Image,D,SIG(1),SIG(2));
else
B = BCLR(Input_Image,D,SIG(1),SIG(2));
end

function B = BGRY(Input_Image,D,SIGD,SIGR)
[X,Y] = meshgrid(-D:D,-D:D);
G = exp(-(X.^2+Y.^2)/(2*SIGD^2));

dim = size(Input_Image);
B = zeros(dim);
for i = 1:dim(1)
for j = 1:dim(2)

iMin = max(i-D,1);
iMax = min(i+D,dim(1));
jMin = max(j-D,1);
jMax = min(j+D,dim(2));
I = Input_Image(iMin:iMax,jMin:jMax);

H = exp(-(I-Input_Image(i,j)).^2/(2*SIGR^2));

F = H.*G((iMin:iMax)-i+D+1,(jMin:jMax)-j+D+1);
B(i,j) = sum(F(:).*I(:))/sum(F(:));

end
end

close(h);

function B = BCLR(Input_Image,D,SIGD,SIGR)

if exist('applycform','file')
Input_Image = applycform(Input_Image,makecform('srgb2lab'));
else
Input_Image = colorspace('Lab<-RGB',Input_Image);
end

[X,Y] = meshgrid(-D:D,-D:D);
G = exp(-(X.^2+Y.^2)/(2*SIGD^2));

SIGR = 100*SIGR;

dim = size(Input_Image);
B = zeros(dim);
for i = 1:dim(1)
for j = 1:dim(2)
 iMin = max(i-D,1);
iMax = min(i+D,dim(1));
jMin = max(j-D,1);
jMax = min(j+D,dim(2));
I = Input_Image(iMin:iMax,jMin:jMax,:);

dL = I(:,:,1)-Input_Image(i,j,1);
da = I(:,:,2)-Input_Image(i,j,2);
db = I(:,:,3)-Input_Image(i,j,3);
H = exp(-(dL.^2+da.^2+db.^2)/(2*SIGR^2));

F = H.*G((iMin:iMax)-i+D+1,(jMin:jMax)-j+D+1);
norm_F = sum(F(:));
B(i,j,1) = sum(sum(F.*I(:,:,1)))/norm_F;
B(i,j,2) = sum(sum(F.*I(:,:,2)))/norm_F;
B(i,j,3) = sum(sum(F.*I(:,:,3)))/norm_F;

end
% waitbar(i/dim(1));
end

if exist('applycform','file')
B = applycform(B,makecform('lab2srgb'));
else
B = colorspace('RGB<-Lab',B);
end

ConvAnn.m

% Solve an Input-Output Fitting problem with a Neural Network

% Script generated by NFTOOL
% Created Mon Mar 06 03:56:41 PST 2017
%
% This script assumes these variables are defined:
%
% norm_feat - input data.
% meas - target data.

inputs = norm_feat;
targets = meas;

% Create a Fitting Network

hiddenLayerSize = 10;
net = fitnet(hiddenLayerSize);
% Choose Input and Output Pre/Post-Processing Functions
% For a list of all processing functions type: help nnprocess
net.inputs{1}.processFcns = {'removeconstantrows','mapminmax'};
net.outputs{2}.processFcns = {'removeconstantrows','mapminmax'};

% Setup Division of Data for Training, Validation, Testing

% For a list of all data division functions type: help nndivide
net.divideFcn = 'dividerand'; % Divide data randomly
net.divideMode = 'sample'; % Divide up every sample
net.divideParam.trainRatio = 70/100;
net.divideParam.valRatio = 15/100;
net.divideParam.testRatio = 15/100;

% For help on training function 'trainlm' type: help trainlm

% For a list of all training functions type: help nntrain
net.trainFcn = 'trainlm'; % Levenberg-Marquardt

% Choose a Performance Function

% For a list of all performance functions type: help nnperformance
net.performFcn = 'mse'; % Mean squared error

% Choose Plot Functions

% For a list of all plot functions type: help nnplot
net.plotFcns = {'plotperform','plottrainstate','ploterrhist', ...
'plotregression', 'plotfit'};

% Train the Network

[net,tr] = train(net,inputs,targets);

% Test the Network

outputs = net(inputs);
errors = gsubtract(targets,outputs);
performance = perform(net,targets,outputs)

% Recalculate Training, Validation and Test Performance

trainTargets = targets .* tr.trainMask{1};
valTargets = targets .* tr.valMask{1};
testTargets = targets .* tr.testMask{1};
trainPerformance = perform(net,trainTargets,outputs)
valPerformance = perform(net,valTargets,outputs)
testPerformance = perform(net,testTargets,outputs)

% View the Network

%view(net)

% Plots
% Uncomment these lines to enable various plots.
%figure, plotperform(tr)
%figure, plottrainstate(tr)
%figure, plotfit(net,inputs,targets)
%figure, plotregression(targets,outputs)
%figure, ploterrhist(errors)
CNN.m

% Solve an Input-Output Fitting problem with a Neural Network

% Script generated by NFTOOL
% Created Mon Mar 06 03:53:29 PST 2017
%
% This script assumes these variables are defined:
%
% meas - input data.
% norm_feat - target data.

inputs = meas;
targets = norm_feat;

% Create a Fitting Network

hiddenLayerSize = 10;
net = fitnet(hiddenLayerSize);

% Choose Input and Output Pre/Post-Processing Functions

% For a list of all processing functions type: help nnprocess
net.inputs{1}.processFcns = {'removeconstantrows','mapminmax'};
net.outputs{2}.processFcns = {'removeconstantrows','mapminmax'};

% Setup Division of Data for Training, Validation, Testing

% For a list of all data division functions type: help nndivide
net.divideFcn = 'dividerand'; % Divide data randomly
net.divideMode = 'sample'; % Divide up every sample
net.divideParam.trainRatio = 70/100;
net.divideParam.valRatio = 15/100;
net.divideParam.testRatio = 15/100;

% For help on training function 'trainlm' type: help trainlm

% For a list of all training functions type: help nntrain
net.trainFcn = 'trainlm'; % Levenberg-Marquardt

% Choose a Performance Function

% For a list of all performance functions type: help nnperformance
net.performFcn = 'mse'; % Mean squared error

% Choose Plot Functions

% For a list of all plot functions type: help nnplot
net.plotFcns = {'plotperform','plottrainstate','ploterrhist', ...
'plotregression', 'plotfit'};

% Train the Network

[net,tr] = train(net,inputs,targets);

% Test the Network

outputs = net(inputs);
errors = gsubtract(targets,outputs);
performance = perform(net,targets,outputs)

% Recalculate Training, Validation and Test Performance

trainTargets = targets .* tr.trainMask{1};
valTargets = targets .* tr.valMask{1};
testTargets = targets .* tr.testMask{1};
trainPerformance = perform(net,trainTargets,outputs)
valPerformance = perform(net,valTargets,outputs)
testPerformance = perform(net,testTargets,outputs)

if(performance<0.4)
msgbox('Stage 1: The Classification Image is Affected')
disp('Stage 1: The Classification Image is Affected')
elseif(performance<0.6)
msgbox('Stage 2: The Classification Image is Affected')
disp('Stage 2: The Classification Image is Affected')
else
msgbox('Stage 3: The Classification Image is Affected')
disp('Stage 3: The Classification Image is Affected')
end

function varargout = analysis(varargin)

% ANALYSIS MATLAB code for analysis.fig
% ANALYSIS, by itself, creates a new ANALYSIS or raises the existing
% singleton*.
%
% H = ANALYSIS returns the handle to a new ANALYSIS or the handle to
% the existing singleton*.
%
% ANALYSIS('CALLBACK',hObject,eventData,handles,...) calls the local
% function named CALLBACK in ANALYSIS.M with the given input arguments.
%
% ANALYSIS('Property','Value',...) creates a new ANALYSIS or raises the
% existing singleton*. Starting from the left, property value pairs are
% applied to the GUI before analysis_OpeningFcn gets called. An
% unrecognized property name or invalid value makes property application
% stop. All inputs are passed to analysis_OpeningFcn via varargin.
%
% *See GUI Options on GUIDE's Tools menu. Choose "GUI allows only one
% instance to run (singleton)".
%
% See also: GUIDE, GUIDATA, GUIHANDLES

% Edit the above text to modify the response to help analysis

% Last Modified by GUIDE v2.5 06-Mar-2017 04:02:04

% Begin initialization code - DO NOT EDIT

gui_Singleton = 1;
gui_State = struct('gui_Name', mfilename, ...
'gui_Singleton', gui_Singleton, ...
'gui_OpeningFcn', @analysis_OpeningFcn, ...
'gui_OutputFcn', @analysis_OutputFcn, ...
'gui_LayoutFcn', [] , ...
'gui_Callback', []);
if nargin && ischar(varargin{1})
gui_State.gui_Callback = str2func(varargin{1});
end

if nargout
[varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});
else
gui_mainfcn(gui_State, varargin{:});
end
% End initialization code - DO NOT EDIT

% --- Executes just before analysis is made visible.

function analysis_OpeningFcn(hObject, eventdata, handles, varargin)
% This function has no output args, see OutputFcn.
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% varargin command line arguments to analysis (see VARARGIN)
global img2
handles.ImgData2 = img2;
guidata(hObject,handles);

signal1 = img2(:,:);
%Feat = getmswpfeat(signal,winsize,wininc,J,'matlab');
%Features = getmswpfeat(signal,winsize,wininc,J,'matlab');

[cA1,cH1,cV1,cD1] = dwt2(signal1,'db4');
[cA2,cH2,cV2,cD2] = dwt2(cA1,'db4');
[cA3,cH3,cV3,cD3] = dwt2(cA2,'db4');

DWT_feat = [cA3,cH3,cV3,cD3];
G = princomp(DWT_feat);
whos DWT_feat
whos G
g = graycomatrix(G);
stats = graycoprops(g,'Contrast Correlation Energy Homogeneity');
Contrast = stats.Contrast;
Correlation = stats.Correlation;
Energy = stats.Energy;
Homogeneity = stats.Homogeneity;
Mean = mean2(G);
Standard_Deviation = std2(G);
Entropy = entropy(G);
RMS = mean2(rms(G));
%Skewness = skewness(img)
Variance = mean2(var(double(G)));
a = sum(double(G(:)));
Smoothness = 1-(1/(1+a));
Kurtosis = kurtosis(double(G(:)));
Skewness = skewness(double(G(:)));
% Inverse Difference Movement
m = size(G,1);
n = size(G,2);
in_diff = 0;
for i = 1:m
for j = 1:n
temp = G(i,j)./(1+(i-j).^2);
in_diff = in_diff+temp;
end
end
IDM = double(in_diff);

feat = [Contrast,Correlation,Energy,Homogeneity, Mean, Standard_Deviation,

Entropy, RMS, Variance, Smoothness, Kurtosis, Skewness, IDM];

load Trainset.mat
load Normalized_Features.mat
xdata = meas;
group = label;
svmStruct1 = svmtrain(xdata,group,'kernel_function', 'linear');
species = svmclassify(svmStruct1,feat,'showplot',false);

% Put the features in GUI

set(handles.edit1,'string',Mean);
set(handles.edit2,'string',Standard_Deviation);
set(handles.edit3,'string',Entropy);
set(handles.edit4,'string',RMS);
set(handles.edit5,'string',Variance);
set(handles.edit6,'string',Smoothness);
set(handles.edit7,'string',Kurtosis);
set(handles.edit8,'string',Skewness);
set(handles.edit9,'string',IDM);
set(handles.edit10,'string',Contrast);
set(handles.edit11,'string',Correlation);
set(handles.edit12,'string',Energy);
set(handles.edit13,'string',Homogeneity);

% Choose default command line output for analysis

handles.output = hObject;

% Update handles structure

guidata(hObject, handles);
% UIWAIT makes analysis wait for user response (see UIRESUME)
% uiwait(handles.figure1);

% --- Outputs from this function are returned to the command line.
function varargout = analysis_OutputFcn(hObject, eventdata, handles)
% varargout cell array for returning output args (see VARARGOUT);
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)

% Get default command line output from handles structure

varargout{1} = handles.output;

function edit1_Callback(hObject, eventdata, handles)

% hObject handle to edit1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'String') returns contents of edit1 as text

% str2double(get(hObject,'String')) returns contents of edit1 as a
double

% --- Executes during object creation, after setting all properties.

function edit1_CreateFcn(hObject, eventdata, handles)
% hObject handle to edit1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called

% Hint: edit controls usually have a white background on Windows.

% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'),
get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end

function edit2_Callback(hObject, eventdata, handles)

% hObject handle to edit2 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'String') returns contents of edit2 as text

% str2double(get(hObject,'String')) returns contents of edit2 as a
double

% --- Executes during object creation, after setting all properties.

function edit2_CreateFcn(hObject, eventdata, handles)
% hObject handle to edit2 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called

% Hint: edit controls usually have a white background on Windows.

% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'),
get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end

function edit3_Callback(hObject, eventdata, handles)

% hObject handle to edit3 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'String') returns contents of edit3 as text

% str2double(get(hObject,'String')) returns contents of edit3 as a
double

% --- Executes during object creation, after setting all properties.

function edit3_CreateFcn(hObject, eventdata, handles)
% hObject handle to edit3 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called

% Hint: edit controls usually have a white background on Windows.

% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'),
get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end

function edit4_Callback(hObject, eventdata, handles)

% hObject handle to edit4 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'String') returns contents of edit4 as text

% str2double(get(hObject,'String')) returns contents of edit4 as a
double

% --- Executes during object creation, after setting all properties.

function edit4_CreateFcn(hObject, eventdata, handles)
% hObject handle to edit4 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called

% Hint: edit controls usually have a white background on Windows.

% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'),
get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end

function edit5_Callback(hObject, eventdata, handles)

% hObject handle to edit5 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'String') returns contents of edit5 as text

% str2double(get(hObject,'String')) returns contents of edit5 as a
double

% --- Executes during object creation, after setting all properties.

function edit5_CreateFcn(hObject, eventdata, handles)
% hObject handle to edit5 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called

% Hint: edit controls usually have a white background on Windows.

% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'),
get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end

function edit6_Callback(hObject, eventdata, handles)

% hObject handle to edit6 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'String') returns contents of edit6 as text

% str2double(get(hObject,'String')) returns contents of edit6 as a
double

% --- Executes during object creation, after setting all properties.

function edit6_CreateFcn(hObject, eventdata, handles)
% hObject handle to edit6 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called

% Hint: edit controls usually have a white background on Windows.

% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'),
get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end

function edit7_Callback(hObject, eventdata, handles)

% hObject handle to edit7 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'String') returns contents of edit7 as text

% str2double(get(hObject,'String')) returns contents of edit7 as a
double

% --- Executes during object creation, after setting all properties.

function edit7_CreateFcn(hObject, eventdata, handles)
% hObject handle to edit7 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called

% Hint: edit controls usually have a white background on Windows.

% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'),
get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end

function edit8_Callback(hObject, eventdata, handles)

% hObject handle to edit8 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'String') returns contents of edit8 as text

% str2double(get(hObject,'String')) returns contents of edit8 as a
double

% --- Executes during object creation, after setting all properties.

function edit8_CreateFcn(hObject, eventdata, handles)
% hObject handle to edit8 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called

% Hint: edit controls usually have a white background on Windows.

% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'),
get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
function edit9_Callback(hObject, eventdata, handles)
% hObject handle to edit9 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'String') returns contents of edit9 as text

% str2double(get(hObject,'String')) returns contents of edit9 as a
double

% --- Executes during object creation, after setting all properties.

function edit9_CreateFcn(hObject, eventdata, handles)
% hObject handle to edit9 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called

% Hint: edit controls usually have a white background on Windows.

% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'),
get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end

function edit10_Callback(hObject, eventdata, handles)

% hObject handle to edit10 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'String') returns contents of edit10 as text

% str2double(get(hObject,'String')) returns contents of edit10 as a
double

% --- Executes during object creation, after setting all properties.

function edit10_CreateFcn(hObject, eventdata, handles)
% hObject handle to edit10 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called

% Hint: edit controls usually have a white background on Windows.

% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'),
get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end

function edit11_Callback(hObject, eventdata, handles)

% hObject handle to edit11 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'String') returns contents of edit11 as text

% str2double(get(hObject,'String')) returns contents of edit11 as a
double

% --- Executes during object creation, after setting all properties.

function edit11_CreateFcn(hObject, eventdata, handles)
% hObject handle to edit11 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called

% Hint: edit controls usually have a white background on Windows.

% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'),
get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end

Analysis.m

function edit12_Callback(hObject, eventdata, handles)

% hObject handle to edit12 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'String') returns contents of edit12 as text

% str2double(get(hObject,'String')) returns contents of edit12 as a
double

% --- Executes during object creation, after setting all properties.

function edit12_CreateFcn(hObject, eventdata, handles)
% hObject handle to edit12 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called

% Hint: edit controls usually have a white background on Windows.

% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'),
get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end

function edit13_Callback(hObject, eventdata, handles)

% hObject handle to edit13 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: get(hObject,'String') returns contents of edit13 as text
% str2double(get(hObject,'String')) returns contents of edit13 as a
double

% --- Executes during object creation, after setting all properties.

function edit13_CreateFcn(hObject, eventdata, handles)
% hObject handle to edit13 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called

% Hint: edit controls usually have a white background on Windows.

% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'),
get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end

% --- Executes on button press in pushbutton1.

function pushbutton1_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
load Trainset.mat
load Normalized_Features.mat
ConvAnn
CNN

Data.m

function [ Unow, CNTR, now_obj_fcn ] = SUB_FUN8( INP_IMG, N_CLTR )

if nargin < 2
N_CLTR = 2;
end

[row, col] = size(INP_IMG);

E_N = 2;
EPLN_VL = 0.001;
MX_ITR = 100;

UP_VAL = rand(row, col, N_CLTR);

DEP_SUM = sum(UP_VAL, 3);
DEP_SUM = repmat(DEP_SUM, [1,1, N_CLTR]);
UP_VAL = UP_VAL./DEP_SUM;
CNTR = zeros(N_CLTR,1);

for i=1:N_CLTR
CNTR(i,1) = sum(sum(UP_VAL(:,:,i).*INP_IMG))/sum(sum(UP_VAL(:,:,i)));
end

pre_obj_fcn = 0;
for i=1:N_CLTR
pre_obj_fcn = pre_obj_fcn + sum(sum((UP_VAL(:,:,i) .*INP_IMG -
CNTR(i)).^2));
end
fprintf('Initial objective fcn = %f\n', pre_obj_fcn);

for ITR = 1:MX_ITR

Unow = zeros(size(UP_VAL));
for i=1:row
for j=1:col
for uII = 1:N_CLTR
tmp = 0;
for uJJ = 1:N_CLTR
disUp = abs(INP_IMG(i,j) - CNTR(uII));
disDn = abs(INP_IMG(i,j) - CNTR(uJJ));
tmp = tmp + (disUp/disDn).^(2/(E_N-1));
end
Unow(i,j, uII) = 1/(tmp);
end
end
end

now_obj_fcn = 0;
for i=1:N_CLTR
now_obj_fcn = now_obj_fcn + sum(sum((Unow(:,:,i) .*INP_IMG -
CNTR(i)).^2));
end
fprintf('Iter = %d, Objective = %f\n', ITR, now_obj_fcn);

if max(max(max(abs(Unow-UP_VAL))))<EPLN_VL || abs(now_obj_fcn -
pre_obj_fcn)<EPLN_VL %ÒýÈë2¸öÅж¨
break;
else
UP_VAL = Unow.^E_N;
for i=1:N_CLTR
CNTR(i,1) =
sum(sum(UP_VAL(:,:,i).*INP_IMG))/sum(sum(UP_VAL(:,:,i)));
end
pre_obj_fcn = now_obj_fcn;
end
end