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The Ecological Rise of Whales Chronicled


by the Fossil Record
Nicholas D. Pyenson
Department of Paleobiology, MRC-121, National Museum of Natural History, Smithsonian Institution, Washington, DC 20013-7012, USA
Correspondence: pyensonn@si.edu
http://dx.doi.org/10.1016/j.cub.2017.05.001

The evolution of cetaceans is one of the best examples of macroevolution documented from the fossil record.
While ecological transitions dominate each phase of cetacean history, this context is rarely stated explicitly.
The first major ecological phase involves a transition from riverine and deltaic environments to marine ones,
concomitant with dramatic evolutionary transformations documented in their early fossil record. The second
major phase involves ecological shifts associated with evolutionary innovations: echolocation (facilitating
hunting prey at depth) and filter-feeding (enhancing foraging efficiency on small prey). This latter phase
involves body size shifts, attributable to changes in foraging depth and environmental forcing, as well as
re-invasions of freshwater systems on continental basins by multiple lineages. Modern phenomena driving
cetacean ecology, such as trophic dynamics and arms races, have an evolutionary basis that remains mostly
unexamined. The fossil record of cetaceans provides an historical basis for understanding current ecological
mechanisms and consequences, especially as global climate change rapidly alters ocean and river ecosys-
tems at rates and scales comparable to those over geologic time.

Introduction ecosystems, showing that these changes were not unidirectional


Cetacean evolution receives wide recognition as a preeminent [9]. During these transitions, evolutionary transformations may
example of macroevolutionary change [1]. This recognition lag, accelerate, or change independently with respect to habitat
derives primarily from an excellent fossil record of their early changes. Lastly, most fossil cetacean studies have focused on
evolution, mostly from the middle to late Eocene epoch (from evolutionary change as read from their skeletal record, with little
55–34 Ma, or million years ago). The early evolution of whales ecological context. Reframing cetacean evolution in the context
documents a suite of evolutionary transformations to anatomical of their changing ecological role illuminates key areas of investi-
systems (and inferred life history and behavioral changes) that gation for resolving how cetaceans underwent an ecological rise
occurred concomitant with a major ecological transition from from initial absence to their current dominance as top consumers
terrestrial ancestry to obligate aquatic life [2–4]. In the subse- in ocean food webs (Figure 1).
quent 34 million years, cetacean diversification is associated
with evolutionary innovations that are unique among mammals At the Water’s Edge
(i.e., filter-feeding and underwater echolocation) [5–6], and the Over the past 250 million years, dozens of tetrapod lineages
attainment of body sizes that are unrivaled by any other verte- have adapted to aquatic life from terrestrial ancestry. Cetaceans
brate, living or extinct [7]. represent just one of the more recent episodes of these inva-
Today, there are over 80 cetacean species divided into sions. Prior to the Cenozoic era (66 Ma to today), over a dozen
two clades: mysticetes, or baleen whales; and odontocetes, or diapsid reptile lineages underwent similar transitions in the
toothed whales. Mysticetes comprise right whales, bowhead Mesozoic era (252–66 Ma), resulting in lineages adapted to a
whales, pygmy right whales, gray whales, and rorquals, the range of semi-aquatic to pelagic lifestyles, such as ichthyosaurs
most species-rich mysticete group. Odontocetes comprise and mosasaurs, whose bauplans mirror different stages in ceta-
pygmy and dwarf sperm whales, sperm whales, beaked whales, cean evolution [10]. The early cetacean fossil record, in this light,
separate ‘river dolphin’ lineages, belugas, narwhals, true por- is unusual because a comparable record for any other tetrapod
poises, and true oceanic dolphins, the most species-rich odon- group early in their history, undergoing similar ecological transi-
tocete clade (Figure 1). Many mysticetes and odontocetes have tions, is sparse.
extinct relatives that are closely related to living species, while Basal branching cetacean lineages, sometimes called ‘ar-
other fossil lineages are unique, without descendants [5–6]. chaeocetes’ (or stem cetaceans, a term used here; Box 1)
The evolutionary relationships among living and fossil cetaceans represent lineages ranging from quadrupedal forms to obligate
remain works in progress. aquatic ones with vestigial hind limbs (Figure 1). The ecomorpho-
The distinction between evolutionary transformation and logic diversity of quadrupedal stem cetaceans is relatively broad
ecological transition in cetacean history is important for several [2–4]. Feeding ecomorphologies ranged from longirostral, gav-
reasons. First, evolutionary and ecological processes have man- ialid crocodilian-like taxa (Remingtonocetus) [4] to potentially
ifestly different mechanisms, scales, modes, rates, and conse- molluscivorous taxa with ventrally deflected rostra (Makarace-
quences [8]. Second, multiple ecological transitions happened tus) [11]. Locomotory modes among stem cetaceans also
in cetacean history, across terrestrial, aquatic, and marine ranged from likely cursorial taxa (e.g., Pakicetus) to lineages

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Figure 1. The ecological rise of whales from the Eocene to today.


(A) Reconstructed assemblage of stem cetaceans from the middle to late Eocene that did not live together, nor in similar environments (see [5]), including
(clockwise from the top), a stranded Dorudon, Ambulocetus, Pakicetus, Kutchicetus, and Rodhocetus (art by Carl Buell). (B) Blue whale (Balaenoptera musculus)
feeding on a prey patch off the coast of California. (Figures modified from [5] and [24], the latter by the BBC under J. Calambokidis NMFS permit 16111.)

that were semi-aquatic (e.g., Ambulocetus, Rodhocetus, Maia- More specifically, the land to sea shorthand pertains more to
cetus) and moved in the water using some combination of the environmental setting of these stem cetaceans, rather than
fore- and hindlimb propulsion [3,4,12]. Investigations into the their ecomorphology. Semi-aquatic stem cetacean lineages
bony structures of the inner and middle ear of stem cetaceans were likely ecological analogs to today’s estuarine and coastal
have revealed several traits already present in these quadru- tetrapods of similar body size (e.g., crocodylians, carnivorans),
pedal taxa that presaged underwater, directional hearing in later based on isotopic characterizations of their habitat use and
obligate marine taxa [13]. Although quadrupedal bauplans domi- diet from analyses of their bones and teeth [18]. Well-sampled
nated the incipient stages of cetacean evolution from 53–41 stratigraphic sections that contain an abundance of stem ceta-
Ma, these bauplans disappeared as obligate marine stem ceta- ceans, such as those in the Wadi Hitan of Egypt [19], can provide
ceans such as Basilosaurus and Dorudon evolved in the middle a fine-scale control on environmental change through time,
to late Eocene (43–34 Ma) [2–4,14] (Figure 2). underpinning more detailed analyses of changing diets or life
With the exception of a handful of genera represented by history.
dense monotaxic bonebeds or near-complete individual skele-
tons [15,16], most early stem cetaceans are known from far Oceans Onwards
less complete skeletons than many artistic interpretations would The second major phase in the ecological history of cetaceans
indicate (Figure 1). The incompleteness of these fossil taxa, relates to their diversification in ocean ecosystems. Some line-
especially for early quadrupedal forms such as Pakicetus, under- ages of semi-aquatic stem cetaceans, such as protocetids,
scores the challenges of reconstructing their ecology. Although achieved a broad geographic distribution by the middle Eocene,
the early stages of cetacean evolution have been commonly ranging to North America, Europe, Africa, and Asia [2,4]. The
described as a ‘land to sea’ transition, it is clear that the earliest dispersal of these lineages, however, can be mostly explained
stem cetaceans were mostly semi-aquatic in habit and feeding, via coastal habitats and island archipelagos that connected
as opposed to being characterized purely as terrestrial [17]. much of Laurasia and Africa in the Paleogene. Protocetids

Box 1. Glossary of terms

Stem cetaceans: Extinct cetacean lineages that evolved prior to the origin of crown Cetacea. This paraphyletic group includes all
extinct lineages more closely related to living whales than to Hippopotamus, their closest living relative. The phylogenetic grouping
of living whales and Hippopotamus has been termed Whippomorpha, although there were likely extinct lineages more closely
related to whales than hippos, such as Raoellidae, which are Eocene age artiodactyls from South Asia [15]. The oldest stem ceta-
cean with robust stratigraphic constraint is Himalayacetus subathuensis at about 53.2 Ma (see [31] for more details).
Crown cetaceans: A clade defined by the most recent common ancestor between all living baleen and toothed whales, and all of
their descendants, extinct or extant. Some authors have also called this clade Neoceti [31]. The oldest crown cetacean is the stem
mysticete Mystacodon selenensis, whose estimated age is about 36.4 Ma [33].
Mysticeti: A clade that includes all living baleen whales and stem relatives that are closer to them than the lineage leading to odon-
tocetes. All living mysticetes are filter-feeders [23] and lack adult, mineralized teeth [27], although many stem mysticetes
possessed adult dentition [24,25].
Odontoceti: A clade that includes all living toothed whales and extinct relatives that are closer to them than the lineage leading to
mysticetes. All living odontocetes echolocate. The oldest odontocete is Simocetus rayi from the early Oligocene of Oregon, USA,
as much as 32 Ma (see [31]).

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Eocene Oligocene Miocene Pli Q (Box 1 and Figure 2). Two major evolutionary innovations that
56.0 33.9 23.0 5.3
2.62.6 0 Ma characterize crown cetaceans reflect ecological modes without
Hippopotamus
parallel in mammals: filter-feeding in mysticetes; and underwater
Pakicetidae
Ambulocetidae
echolocation in odontocetes. The evolutionary origins of both in-
Origin of underwater hearing novations are not straightforward, although they both represent
Remingtonocetidae Stem cetaceans
or key innovations that fueled the explosive radiation of crown ce-
“Protocetidae” “archaeocetes”
Semi-aquatic
taceans during the Oligocene [22]. Living mysticetes filter-feed
using keratinous plates, called baleen, which hang from the
Obligate aquatic
roof of the mouth and enhance foraging efficiency on fish or krill
Basilosauridae
Mystacodon
Mystacodon selenensis suspended in the water column [23]. However, many stem mys-
Toothed stem mysticetes
“toothed” Stem ticetes possessed mineralized adult teeth [5,24,25], and the
Llanocetus
Llanocetus dentricrenatus
dentricrenatus
mysticetes disappearance of teeth in some crownward stem mysticetes
?
has been presumably linked to the appearance of baleen,
Eomysticetidae
Eomysticetidae

Balaenidae
although there is no direct evidence for baleen in any mysticetes
Neobalaenidae older than the middle Miocene [26]. Thus, the exact antiquity of
Eschrichtiidae baleen-enabled filter-feeding remains unclear [27].
Crown
Crown Mysticeti
Mysticeti Balaenopteridae
Echolocation is a form of biological sonar that requires sound
generation, sound reception, and signal processing using fat
Origin of filter-feeding
Crown Cetacea bodies, air sinuses and muscles of the face, along with fat bodies
Origin of echolocation
Echovenator sandersi
Echovenator sandersi that connect the jaw to the ear bones [28]. Echolocation has
Other
other Xenorophidae Stem
evolved several times among tetrapods, although odontocetes
Simocetus rayi
Simocetus rayi odontocetes are the only ones that echolocate underwater. Evidence for
Other stem Odontoceti high frequency hearing, a trait for all living odontocetes, has
Physeteroidea been documented in the stem odontocete Echovenator sand-
Ziphiidae ersi, pointing to an Oligocene origin for echolocation (27–24
Platanista
Ma) [29]. More work on the timing and mode of the other two
Crown Odontoceti
Odontoceti Lipotes
Inioidea
components in echolocation (sound generation and signal pro-
Mixed cessing) may be difficult to infer without clear bony correlates
Freshwater
Delphinoidea, of their soft tissue bases. The co-occurrence of stem and crown
including:
Monodontidae, cetaceans in the Oligocene signals non-analogous complexities
Marine Phocoenidae,
and to cetacean community structure that require more study [21].
Crown clades Delphinidae
Fordyce [30] originally pointed to global ocean changes at
Current Biology the Eo–Oligocene boundary as a potential driver for the origin
of crown cetaceans, with the establishment of the Antarctic
Figure 2. Whale phylogeny and evolution. Circumpolar Current (ACC) system and the large-scale changes
Generalized view of cetacean evolution over geologic time, showing major to oceanic productivity that accompanied it. While intuitively
lineages, innovations and ecological changes. Phylogenetic relationships
appealing, there are several problems with invoking this explana-
follow morphological studies for fossil (stem) lineages [2,5,6,14,25,29,33], and
molecular studies for living taxa [22,32]. Higher taxonomic groups among tion, in terms of timing and agency. First, an increasingly better
crown cetaceans show stratigraphic ranges that include both stem and crown reported fossil record of Oligocene age crown cetaceans points
lineages. Origin times and phylogenetic placements of key innovations to the start of this epoch as the primary time for their diversifica-
are based on [13] for underwater hearing, [29] for echolocation, and [27] for
filter-feeding. Abbreviations: Ma, millions of years ago; Pli, Pliocene; and tion [31], but molecular estimates of divergence times consis-
Q, Quaternary. tently point to an older origin for crown Cetacea, specifically
in the late Eocene [32]. For decades, the only crown cetacean
known from this age was a stem mysticete, Llanocetus dentri-
were smaller in body size than obligate marine basilosaurids, crenatus, from late Eocene sediments of Seymour Island,
which achieved a global distribution by the late Eocene Antarctica, at approximately 34.2 Ma [32]. Lambert et al. [33]
[2–4,16]. Basilosaurids have been reported from every continent recently reported an older crown cetacean, Mystacodon sele-
and ranged in body size from 5 to 18 m-long taxa [2,14]. Based nensis, from the late Eocene of Peru, which is geochronologically
on rare stomach contents, basilosaurids were piscivorous [14], older than Llanocetus at an estimated age of 36.4 Ma. There is no
and some species likely consumed other stem cetaceans [20], record of odontocetes older than the early Oligocene (32 Ma),
in a hypercarnivorous mode reminiscent of mosasaurs — Creta- yet the antiquity of Mystacodon implies a ghost lineage for odon-
ceous diapsids with a convergent bauplan [10]. Fossil assem- tocetes extending to the late Eocene as well (Figure 2).
blages of stem cetaceans including both semi-aquatic and Second, there is a lack of clarity about specific ecological
obligate marine forms are best represented by the fossil-rich mechanisms that explain how Eo-Oligocene ocean changes
Eocene age lagoonal deposits of the Wadi Hitan [2,3,19]. promoted the diversification of crown cetaceans. Berger [34]
There is evidence that some pelagic stem cetaceans survived emphasized the presence of silicate in deep water upwelling
through the Eocene–Oligocene boundary (34 Ma) [21], implying from the ACC as a resource opportunity for both mysti-
a co-existence with the first crown cetaceans, a group that in- cetes and odontocetes. However, opportunities are necessary
cludes lineages leading to today’s baleen and toothed whales but not sufficient to explain the selection pressures for bulk

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A B Figure 3. Baleen whale body size evolution


Total length (meters) 18
O over geologic time.
0 5 10 15 20 25 0 2 4 6 (A) Mean body lengths for living and fossil
mysticetes over geologic time. Shaded areas
0

Q show quantiles of Brownian motion simulations on


Ice Ages mysticete phylogeny to show that the range of
First right whales Pli
modern body size lacks small species (less than
10

First rorquals 5 m) and is over-represented by large ones (more

Miocene
than 10 m), relative to the fossil record. Circles,
baleen-bearing mysticetes; triangles; toothed
Ma
20

Crown Mysticeti mysticetes. (B) A smooth-spline fitted to oxygen


Start of
isotope curve as a proxy for modelling tempera-
Antarctic ture-dependent body size evolution. From [7].

Olig
Origin of filter-feeding
30

Circumpolar
Current
Llanocetus dentricrenatus

Eo
40

of sperm whales supports this escala-


Current Biology
tion in body size, but the diversity of
fossil relatives points to hypercarnivo-
filter-feeding and biosonar-assisted hunting (see [35,36]), espe- rous feeding modes during the Neogene without analog for
cially if both traits did not evolve until 4–10 million years after today’s sperm whales [39].
the establishment of the ACC (Figures 2, 3). There is a need A plurality of co-evolutionary interactions also likely shaped
for testable models that explain the ecological context of ceta- cetacean evolution. Parasitic or commensal relationships with
cean evolution with known mechanisms and responses [37], whale barnacles have been proposed as co-opted anti-predatory
especially for relevant metrics that can be observed in the fossil responses (i.e., armor) for some mysticetes, in response to killer
record; some approaches to meet these challenges are dis- whale (Orcinus orca) predation [40]. Intra-guild (and cross-clade)
cussed below. predation by Orcinus (e.g., [41]; Figure 4) is among the few exam-
ples for this feeding mode among living marine tetrapods [10], but
Escalation, Predation and Coevolution its prevalence in the geological history of cetaceans is unknown.
Today’s cetaceans are major ecological consumers with large The few studies on the fossil record of coevolutionary factors
body sizes (even the smallest cetaceans are large compared (e.g., stratigraphic and geographic co-occurrences between
to most mammal species), they possess high metabolic rates, barnacles and cetaceans) have already yielded insight into the
and they occupy high trophic levels in ocean food webs [37]. antiquity of migration in humpback whales [42]. The selection
This ecological position is the result of evolutionary pro- advantages conferred by these interactions are compelling,
cesses, yet there are few studies that have explicitly consid- and they range across many taxa and habitats. For example,
ered their trophic interactions as a consequence of long- the deposition of whale carcasses on the seafloor creates unique
term generative processes, such as arms races [38]. For communities that persist for decades, depending on water depth.
example, living sperm whales (Physeter macrocephalus) are Numerous fossil whale examples demonstrate that these com-
the largest odontocetes of all-time, and they pursue some of munities had different components over geologic time, including
the largest cephalopods known (e.g., giant and colossal linkages with other deep-sea habitats such as woodfalls, cold
squids) as single prey items at depth. The long fossil record seeps, and hydrothermal vents [31].

Figure 4. Killer whale attack on a beaked whale.


A killer whale (Orcinus orca) pursues and bites a beaked whale (Mesoplodon sp.) off Western Australia. Images reproduced from Figure 6 in [42].

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the high relative abundance of large fossil mysticetes at


Cerro Ballena (Figure 5), in the Atacama of Chile [45], along
with other taphonomic traits, mirror similar patterns in toxin-
mediated mass strandings today [46], strongly pointing to
harmful algal blooms as the mechanism responsible for this
Miocene death assemblage.
Body size is also a direct means to evaluate ecological power
because organismal size correlates strongly with many meta-
bolic functions and life history traits. While odontocete body
size is likely strongly related to foraging and dive depth [47],
the extremely large body size among mysticetes such as blue,
fin, bowhead and right whales have independent origins [7]
(Figure 3). These body size changes are also linked to the
appearance, at the start of the Ice Ages, of seasonal, dense,
but patchy prey aggregations on which the largest mysticetes
Figure 5. Whale mass stranding from the Miocene. most efficiently feed [24].
High dynamic range image of orthogonal three-dimensional point clouds
showing several over-lapping adult and juvenile mysticetes from Cerro Bal-
Past and Future Ecological Contexts
lena, a Miocene mass stranding fossil locality. Small scale bars 20 cm, large
scale bars 30 cm. See [45] for more details. Geologic-scale changes to marine habitats, through eustatic
sea-level changes, tectonic uplift, and ocean portal openings
and closures, have likely had a major impact on cetacean evolu-
Morphological Parallelism — Signs of Trophic tion [31]. For example, large-scale sea-level fluctuations in
Convergence? the Pleistocene repeatedly eliminated seafloor foraging habitats
The diversity of living cetaceans shows clear examples of and altered migration routes [42,48], yet many lineages persisted
morphological and ecological parallelism. For example, delphi- through these changes, showing ecological flexibility. In other
nid species belonging to Cephalorhynchus have radiated cases, flooding of continental basins (e.g., Amazonia) provided
into small, protected coastal habitats of the Southern Hemi- ecological opportunities for odontocete invasions of freshwater
sphere [43], and have converged in their small size, external ecosystems [49]. The implications of future sea-level rise, in
morphology, and even biosonar frequency range with coastal terms of cetacean habitat creation and/or elimination, along
phocoenids (or true porpoises). There are examples of this with changes to prey availability, remain poorly understood.
type of parallelism (i.e., convergence within clades) in the fossil Humans have hunted cetaceans for thousands of years, but
record of cetaceans: Australodelphis, a fossil delphinid from technological innovations in the past few hundred years have
Pliocene age rocks of the Sørsdal Formation, East Antarctica, accelerated and increased the rate and scale of impact [37,50].
exhibits a cranial morphology most similar to living beaked Pelagic whaling, for example, decimated the abundances of
whales (Ziphiidae) [31]. Beyond parallelism within clades, the baleen whales, which has had downstream effects on other ma-
cetacean fossil record also shows a compelling example of rine mammals via trophic cascades [37,50]. Other detrimental
cross-clade convergence with Odobenocetops, a fossil odonto- impacts, such as by-catch or wholesale habitat modification
cete from Mio-Pliocene rocks of South America, and living wal- (e.g., dam construction) threaten marginal cetacean species
ruses (Odobenus), known only from the Northern Hemisphere, (e.g., river dolphins) with extinction. Anthropogenic climate
based on its heavily foreshortened rostrum, vaulted palate, and change, especially via shrinking sea ice and altered ocean
large tusks [31]. Analyses using taxonomically broad datasets thermal gradients at polar latitudes, will lead to range shifts
from the diet of marine tetrapods show that such patterns of for many cetacean species, precipitating new trophic interac-
similarities in feeding morphology are tied to trophic conver- tions and/or colonization opportunities [10,50]. These changes
gences, which cut across deep divergences in over 250 million may be abrupt, episodic, and difficult to predict [8]. Like other
years of tetrapod phylogeny [44]. There are likely common historical data, the fossil record provides a crucible for the
causes for these similarities, but they remain unexplored. ecological limits and capabilities of cetaceans, and should be a
source of continued data for predicting future states in the
Abundance and Body Size as Semaphores of Ecological Anthropocene.
Power
Traditionally, paleontologists have relied on taxonomic richness ACKNOWLEDGEMENTS
(i.e., counts of taxa within time bins) as a metric for ecological
I thank A.T. Boersma, J.A. Goldbogen, A.H. Fleming, A.S. Friedlaender, N.P.
diversity through geologic time. Hyperabundant fossil cetacean
Kelley, M.S. Leslie, M.R. McCurry, M.F. McKenna, A. O’Dea, J.F. Parham,
localities in Egypt, California, Peru, and Chile [19,31,45] provide C.M. Peredo, J. Velez-Juarbe, G.J. Vermeij and M. Yamato for helpful conver-
an additional avenue for answering paleoecological questions sations about these topics over many years.
using abundance-based metrics. In these scenarios, strati-
graphic and taphonomic bias control remain paramount, but
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