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Abstract: In this article a review of different image analysis methods in the field of soil
science is presented. The future potential in some methods is pointed out. In general
these methods have proven to save a lot of labor intensive analysis work. However,
a certain degree of subjectiveness is present in many methods, making comparison of
results from different experts difficult.
Introduction
Transport of water and solutes through the soil poses one of the most seri-
ous threats to our environment at present as well as in a possibly sustainable
future. The soils and the vadose zone are constituents of a complex system
of inorganic and organic compounds that cover almost the entire land sur-
face of the earth. The unsaturated zone, situated between the soil surface
and the groundwater table, plays an important role in the ecosystem as it is
the base upon which the food chain is built. Plants take up nutrients and
water from the unsaturated zone. Vegetation in turn, is consumed by ani-
mals and human beings. Thus, harmful substances in the soil can pose a
threat to human health. Another important role of the unsaturated zone is
in the recharge of groundwater. Groundwater constitutes an important
water supply component for, for instance, domestic, industrial, and agricul-
tural use, and is often considered a clean water resource. However, pollut-
ants from the soil surface can be transported down through the soil, thus
contaminating the groundwater. A sustainable management of these is the
fundament for a safe future food production, clean water supply, as well as
a clean recreational environment.
Image analysis can be defined as extraction of useful information from
images by means of digital image processing techniques. In soil science,
image analysis can be used to measure specific features of the soil or vegeta-
tion. An image can be considered to be a large data matrix where each
142 Magnus Persson
e lement (often called pixel) contains information about the brightness (in
black and white images) or color (in color images) of a small area of the
motif. Features of the image, like color or structures present, can be related
to physical properties of the motif (or parts of it). Using image analysis it is
possible to find patterns and boundaries, track objects, analyze colors, etc
in an automated way making image analysis ideal for various applications
like surveillance, robotics, astronomy, remote sensing and soil science.
Images can be captured in several different ways. Nowadays digital
cameras are used in most applications since they directly produce digital
images that directly can be analyzed mathematically. The wavelength of the
recorded light can be different, normally cameras record visible light
(roughly 400–700 nm), but longer or shorter wavelength are also used
(IR, UV, or even X-ray). The scales of the image can also vary; micro scale
images can be obtained through microscopes while satellite images almost
can cover entire continents.
There is a great potential of using image analysis application in soil sci-
ence. Both characteristics of the crops and the soil material itself can be
measured using image analysis. The objective of this paper is to present a
review of image analysis applications in the field of soil science. In this ar-
ticle, I will focus on image analysis for determining soil characteristics since
image analysis related to crops can be found elsewhere (e.g., Zheng and
Moskal, 2009). For X-ray computed tomography imaging and other related
methods see, e.g., Taina et al. (2008).
Some applications
Color and color space
Physically, the wavelength of light determines its color. The color of an
object is determined both by the spectrum of the incident illumination and
on the reflectance spectrum of the surface. A color model (color space) is an
abstract mathematical model describing the way colors can be represented
as tuples of numbers. Some examples are RGB (red, green, and blue),
CMYK (cyan, magenta, yellow, and black), and HSV (hue, saturation, and
value). In the RGB color space, which is the one used by most digital cam-
eras and computer screens, all colors can be represented by mixing various
amounts of red, green, and blue. In most applications each channels con-
tains 8 bits of data 28 = 255. Thus 2553 = 16581375 different colors can be
described, see Figure 1.
Human perception of color is highly influenced by in-brain image analy-
sis. Thus, an object of a specific, known color, appear to have the same
color when viewed in different lights. However, an image of an object needs
Figure 1. Different colors in the RGB (red, green, and blue) color space.
144 Magnus Persson
Dye tracers
Dye tracers have been used for many years by soil scientists investigating
the effects of soil heterogeneity as they allow visualization of spatial flow
patterns (see, e.g., Flury and Flühler, 1995). This method has proven very
useful for detecting preferential flow paths in the soil. Traditionally, image
analysis of the dye photographs has only involved separation between
stained and non-stained soil. However, using image analysis the dye con-
centration can be estimated from soil color (e.g., Ewing and Horton, 1999;
Forrer et al., 2002).
The color as expressed in a specific color space of the corrected images
can be related to dye concentration. In most cases, an empirical polynomial
equation is adopted to model the relationship between RGB or HSV values
and dye concentration (Ewing and Horton, 1999; Aeby et al., 2001; Persson
et al., 2005). Other more complex models like neural networks have also
been used (Persson, 2005a). The relationship between soil color and dye
concentration is soil specific. One example is presented in Figure 2.
The same fundamental principle of color consistency can also be used for
determining other physical characteristics of soil material like organic mat-
ter content (Chen et al., 2000), soil albedo (Post et al., 2000), or water con-
tent (Persson, 2005b).
Figure 2. The relationship between RGB values and dye concentration in three soil types.
usually the resin contains some sort of dye so that is stands out from the
color of the soil grains. Using fluorescent resins and light sources with
different wavelengths even more information can be extracted from the im-
ages. After hardening the sample is cut into thin sections that are photo-
graphed (e.g., Bouma et al., 1977; Protz et al., 1992; Ringrose-Voase, 1996).
After segmentation the pore space can be analyzed to find the shape and
size of pores between the grains. Furthermore, characteristics like connec-
tivity of pores, types of soil material, and identification of earth worm
channels etc can be determined.
146 Magnus Persson
Other applications
Image analysis for determining root length and diameter has received a lot
of attention. Previous analysis methods (manual inspection) were very
labor intensive and several commercial image analysis software packages
has been developed (e.g., Kirchhof, 1992; van der Weele, 2003; French et al.,
2009).
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