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IR spectroscopy, UV-
UV-Visible spectroscopy,
Mass Spectrometry, NMR spectroscopy
13- 1
Principles of Molecular Spectroscopy
Spectroscopy::
Electromagnetic Radiation
13- 2
Definitions
• Spectroscopy-
Spectroscopy- the study of the light from an object.
• Spectrometer
Spectrometer-- an instrument which spreads out light
making a spectra.
• Spectra
Spectra-- range of electromagnetic energy separated
by wavelength.
Electromagnetic Radiation
13- 4
Figure 1: The Electromagnetic Spectrum
400 nm 750 nm
Visible Light
13- 5
Figure 2. The Electromagnetic Spectrum
Shorter Wavelength (
() Longer Wavelength (
( )
Ultraviolet Infrared
Higher Frequency (
() Lower Frequency (
()
13- 6
Figure 3. The Electromagnetic Spectrum
Cosmic rays
Rays
X-rays
Energy Ultraviolet light
Visible light
Infrared radiation
Microwaves
Radio waves
13- 7
2 Basic Types of Spectra
• Continuous-
Continuous- energy of all wavelengths
• Discrete
Discrete-- energy at a particular wavelength
– Emission or bright lines
– Absorption or dark lines
Continuous Spectrum
Hotter objects
Shift toward this end
Longer
wavelengt
h
Shorter
wavelength
Cooler objects
Shift toward this end
Discrete Spectrum
Absorption
Each
element has
a unique
Ex: stars, signature of
planets w/ absorption
atmospher lines. That
es, & pattern
galaxies helps
scientists
Spectra Cool, identify the
Absorption
thin element(s).
gas spectrum
Hot object
Discreet spectrum-
spectrum- Again, the
Emission pattern of
the lines
determines
the identity
of the
element.
Cold, Thin,
empty Emission
hot gas spectrum
space
Spectra
Ex: stars,
planets w/
atmospheres,
& galaxies
Spectra
Cool, thin gas Absorption
spectrum
Hot object
Motion of Objects in Space
13- 15
E = h
h
electronic UV--Vis
UV
vibrational infrared
rotational microwave
nuclear spin radiofrequency
13- 17
Infrared Spectroscopy
13- 18
Infrared Spectroscopy
stretching
bending
13- 19
Stretching Vibrations of a CH2 Group
Symmetric Antisymmetric
13- 20
Bending Vibrations of a CH2 Group
In plane In plane
13- 21
Bending Vibrations of a CH2 Group
13- 22
Figure 4. Infrared Spectrum of Hexane
bending
C—H stretching
bending bending
CH3CH2CH2CH2CH2CH3
C=C
C=C—
C=C —H H —C
H2C=C
H2C=CHCH2CH2CH2CH3
13- 25
Infrared Absorption Frequencies
C C 1620--1680
1620
—C C— 2100--2200
2100
—C N 2240--2280
2240
13- 26
Infrared Absorption Frequencies
cis--RCH
cis CHR' 665--730
665
trans--RCH
trans CHR' 960--980
960
13- 29
Figure 6. Infrared Spectrum of tert
tert--butylbenzene
Ar—
Ar —H
H H
H H C6H5C(CH3)3
C C
H H C H
C H
H H H
H
H —C Monsubstituted
H
H benzene
13- 31
Figure 7. Infrared Spectrum of 2-
2-Hexanol
H —C
O —H
CH3CH2CH2CH2CHCH3
OH
CH3CH2CH2CH2CCH3
O
H—C
C=O
13- 36
Transitions between electron energy states
13- 37
Conventions in UV-
UV-VIS
13- 38
UV Spectrum of cis,trans-
cis,trans-1,3
1,3--cyclooctadiene
2000
Molar max 230 nm
( )
absorptivity (
max 2630
1000
Wavelength, nm
13- 39
** Transition in cis,trans-
cis,trans-1,3
1,3--cyclooctadiene
LUMO
E = h
HOMO
Most stable
-electron -Electron
configuration configuration of
excited state
Highest occupied molecular orbital (HOMO) to the lowest unoccupied
molecular orbital (LUMO), and the resulting species is called an excited state. 13- 40
** Transition in Alkenes
13- 41
Methyl groups on double bond cause max
to shift to longer wavelengths
H H H CH3
C C C C
H H H CH3
13- 42
Extending conjugation has a larger effect
on max; shift is again to longer
wavelengths
H H H H
C C C C H
H H H C C
H H
max 170 nm
max 217 nm
13- 43
H H
C C H
H max 217 nm
C C
(conjugated diene
diene))
H H
H3C H
C C H max 263 nm
H C C H conjugated triene plus
two methyl groups
H C C
H CH3
13- 44
Lycopene
max 505 nm
13- 45
Mass Spectrometry
13- 46
Principles of Electron-
Electron-Impact Mass Spectrometry
e–
13- 47
Principles of Electron-
Electron-Impact Mass Spectrometry
e–
13- 48
Principles of Electron-
Electron-Impact Mass Spectrometry
e–
13- 49
Principles of Electron-
Electron-Impact Mass Spectrometry
This energy-
energy-rich species ejects an electron.
13- 50
Principles of Electron-
Electron-Impact Mass Spectrometry
This energy-
energy-rich species ejects an electron.
+ e–
•
13- 51
Principles of Electron-
Electron-Impact Mass Spectrometry
13- 52
Principles of Electron-
Electron-Impact Mass Spectrometry
13- 53
Principles of Electron-
Electron-Impact Mass Spectrometry
+
•
13- 54
Principles of Electron-
Electron-Impact Mass Spectrometry
+ •
13- 55
Principles of Electron-
Electron-Impact Mass Spectrometry
mixture of ions of
different mass
gives separate peak
for each m/z
intensity of peak
proportional to
percentage of each + +
ion of different
mass in mixture + +
+
separation of peaks
depends on relative
+
mass
13- 56
Principles of Electron-
Electron-Impact Mass Spectrometry
mixture of ions of
different mass
gives separate peak
for each m/z
intensity of peak + + + +
proportional to
percentage of each + +
atom of different
mass in mixture
separation of peaks
depends on relative
mass
13- 57
Some molecules undergo very little fragmentation
100
80 m/z = 78
60
40
20
0
20 40 60 80 100 120
m/z
13- 58
Isotopic Clusters
H H H
H H H H H H
78 79 79
H H H H H H
H H H
100
80 112
60
40 114
m/z
20
0 20 40 60 80 100 120
13- 60
Isotopic Clusters +
H H
in Chlorobenzene
40 m/z
20
0 20 40 60 80 100 120
13- 61
Alkanes undergo extensive fragmentation
CH3—CH2—CH2—CH2—CH2—CH2—CH2—CH2—CH2—CH3
Relative 43
intensity
57
100
80 Decane
60
71
40
85
20 99 142
0 20 40 60 80 100 120
m/z
13- 62
Propylbenzene fragments mostly
at the benzylic position
Relative
intensity
100
91
80
CH2—CH2CH3
60
40
120
20
0 20 40 60 80 100 120
m/z
13- 63
Molecular Formula
as a
Clue to Structure
13- 64
Molecular Weights
13- 65
The Nitrogen Rule
A molecule with an
odd number of NH2 93
nitrogens has an odd
molecular weight.
A molecule that O2N NH2 138
contains only C, H,
and O or which has
an even number of NO2
nitrogens has an
even molecular O2N NH2 183
weight.
13- 66
Exact Molecular Weights
CH3(CH2)5CH3 CH3CO
Heptane Cyclopropyl acetate
13- 68
Index of Hydrogen Deficiency
13- 69
Example 1
C7H14
= 1 (C7H16 – C7H14)
2
= 1 (2) = 1
2
Therefore, one ring or one double bond.
13- 70
Example 2
C7H12
= 1 (C7H16 – C7H12)
2
= 1 (4) = 2
2
13- 71
Oxygen has no effect
CH3(CH2)5CH2OH (1-
(1-heptanol, C7H16O) has
same number of H atoms as heptane
1 (C7H16 – C7H16O) = 0
2
13- 72
Oxygen has no effect
CH3CO
Cyclopropyl acetate
1 (C H – C H O ) = 2
5 12 5 8 2
2
one ring plus one double bond
13- 73
If halogen is present
H Cl
C3H5Cl
C C
same index of hydrogen
H CH3
deficiency as for C3H6
13- 74
Rings versus Multiple Bonds
13- 75
Introduction to
1H NMR Spectroscopy
13- 76
The nuclei that are most useful to
organic chemists are:
1H and 13C
13- 77
Nuclear Spin
+ +
+
+
13- 79
An external magnetic
field causes nuclear +
magnetic moments to
align parallel and
antiparallel to applied
field. +
+
H0
+
+
13- 80
There is a slight
excess of nuclear +
magnetic moments
aligned parallel to
the applied field.
+
+
H0
+
+
13- 81
Energy Differences Between Nuclear Spin States
E E '
Units
The frequency of absorbed
electromagnetic radiation Hz
is proportional to
13- 85
Nuclear Shielding
and
1H Chemical Shifts
13- 86
Shielding
13- 87
Shielding
13- 88
Chemical Shift
Chemical shift is a
measure of the degree to
which a nucleus in a
molecule is shielded.
C H
Protons in different
environments are shielded
to greater or lesser
degrees; they have
different chemical shifts. H0
13- 89
Chemical Shift
(δ) are
Chemical shifts (δ CH3
measured relative to the
protons in H3C Si CH3
tetramethylsilane (TMS)
as a standard.
CH3
13- 90
Downfield Upfield
Decreased shielding Increased shielding
(CH3)4Si (TMS)
10.0 9.0 8.0 7.0 6.0 5.0 4.0 3.0 2.0 1.0 0
Chemical shift (
(, ppm)
measured relative to TMS
13- 91
Chemical Shift
1456 Hz - 0 Hz
= x 106
200 x 106 Hx
= 7.28
13- 92
Cl
7.28 ppm
H C Cl
Cl
10.0 9.0 8.0 7.0 6.0 5.0 4.0 3.0 2.0 1.0 0
(, ppm)
Chemical shift (
13- 93
Effects of Molecular Structure
on
1H Chemical Shifts
13- 94
Electronegative substituents decrease
the shielding of methyl groups
13- 95
Electronegative substituents decrease shielding
13- 96
Effect is cumulative
CHCl3
CHCl 7.3
CH2Cl2 5.3
CH3Cl 3.1
13- 97
Methyl, Methylene, and Methine
δ 0.9 δ 0.9
CH3 CH3
δ 1.2 δ 0.8
H3C C H δ 1.6 H3C C CH2 CH3
CH3 CH3
13- 98
Protons attached to sp2 hybridized carbon
are less shielded than those attached
to sp3 hybridized carbon
H
H H H H
C C CH3CH3
H H H H
H
7.3 5.3 0.9
13- 99
But protons attached to sp hybridized carbon
are more shielded than those attached
to sp2 hybridized carbon
5.3
H H
2.4
C C H C C CH2OCH3
H H
13- 100
Protons attached to benzylic and allylic
carbons are somewhat less shielded than usual
H3C CH3
1.5 0.8
13- 101
Proton attached to C=O of aldehyde
is most deshielded C—
C—H
δ 2.4
H O
H3C C C H δ 9.7
CH3
δ 1.1
13- 102
Type of proton Chemical shift (
(), Type of proton Chemical shift (
(),
ppm ppm
H C R 0.9--1.8
0.9 H C C N 2.1--2.3
2.1
H C C C 1.5
1.5--2.6 H C C C 2.5
H C C 2.0--2.5
2.0 H C Ar 2.3--2.8
2.3
13- 103
Type of proton Chemical shift (
(), Type of proton Chemical shift (
(),
ppm ppm
H C NR 2.2--2.9
2.2
H
C C 4.5--6.5
4.5
H C Cl 3.1--4.1
3.1
H Ar 6.5--8.5
6.5
H C Br 2.7--4.1
2.7
O
3.3--3.7
3.3 H C 9-10
H C O
13- 104
Type of proton Chemical shift (
(),
ppm
H NR 1-3
H OR 0.5--5
0.5
H OAr 6-8
HO C 10--13
10
13- 105
Interpreting Proton NMR
Spectra
13- 106
Information contained in an NMR
spectrum includes:
1. number of signals
13- 107
Number of Signals
13- 108
N CCH
CCH2OC
OCH
H3
OCH
OCH3
NCCH
NCCH2O
10.0 9.0 8.0 7.0 6.0 5.0 4.0 3.0 2.0 1.0 0
(, ppm)
Chemical shift (
13- 109
Chemically equivalent protons
H3CCH2CH3
chemically equivalent
13- 110
Chemically equivalent protons
Replacing protons at C-
C-1 and C-
C-3 gives same
compound (1-
(1-chloropropane)
C-1 and C-
C-3 protons are chemically
equivalent and have the same chemical shift
ClC
Cl CH2CH2CH3 CH3CH2CH2Cl
H3CCH2CH3
chemically equivalent
13- 111
Diastereotopic protons
C C
H3C H 5.5 ppm
13- 112
Spin--Spin Splitting
Spin
in
NMR Spectroscopy
13- 113
Figure 13.12 Cl2CHCH3
4 lines; 2 lines;
quartet doublet
CH CH3
10.0 9.0 8.0 7.0 6.0 5.0 4.0 3.0 2.0 1.0 0
(, ppm)
Chemical shift (
13- 114
Two--bond and three-
Two three-bond coupling
H
C C H C C H
H
protons separated by protons separated by
two bonds three bonds
(geminal relationship) (vicinal relationship)
13- 115
Two--bond and three-
Two three-bond coupling
H
C C H C C H
H
13- 116
Figure 13.12 Cl2CHCH3
4 lines; 2 lines;
quartet doublet
CH CH3
10.0protons
coupled 9.0 8.0are7.0 6.0 (three-
vicinal 5.0 4.0
(three -bond 3.0 2.0 1.0 0
coupling)
CH splits CH
CH3 into Chemical (H, 3ppm)
a doublet,shiftCH
C( splits CH
CH into a quartet
Why do the methyl protons of
1,1--dichloroethane appear as a doublet?
1,1
Cl H
signal for methyl
H C C H protons is split into
a doublet
Cl H
13- 118
Why do the methyl protons of
1,1--dichloroethane appear as a doublet?
1,1
Cl H
signal for methyl
H C C H protons is split into
a doublet
Cl H
Cl H
signal for methyl
H C C H protons is split into
a doublet
Cl H
The protons at C-
C-2 "feel" the effect of both the
applied magnetic field and the local field
resulting from the spin of the C-
C-1 proton.
13- 120
Why do the methyl protons of
1,1--dichloroethane appear as a doublet?
1,1
Cl H
"true" chemical
H C H shift of methyl
C
protons (no coupling)
Cl H
this line corresponds this line corresponds
to molecules in which to molecules in which
the nuclear spin of the nuclear spin of
the proton at C-
C -1 the proton at C-
C -1
reinforces opposes
the applied field the applied field
13- 121
Why does the methine proton of
1,1--dichloroethane appear as a quartet?
1,1
Cl H
signal for methine
proton is split into H C C H
a quartet
Cl H
The proton at C-
C-1 "feels" the effect of the
applied magnetic field and the local fields
resulting from the spin states of the three
methyl protons. The possible combinations
are shown on the next slide.
13- 122
Why does the methine proton of
1,1--dichloroethane appear as a quartet?
1,1
13- 123
The splitting rule for 1H NMR
13- 124
Splitting Patterns:
The Ethyl Group
13- 125
BrCH
BrC H2CH3
4 lines; 3 lines;
quartet triplet
CH3
CH2
10.0 9.0 8.0 7.0 6.0 5.0 4.0 3.0 2.0 1.0 0
(, ppm)
Chemical shift (
13- 126
Table 13.2
1 Doublet 1:1
2 Triplet 1:2:1
3 Quartet 1:3:3:1
4 Pentet 1:4:6:4:1
5 Sextet 1:5:10:10:5:1
6 Septet 1:6:15:20:15:6:1
13- 127
Splitting Patterns:
The Isopropyl Group
13- 128
BrCH
BrC H(C
(CH
H3)2
2 lines;
7 lines; doublet
septet
CH3
CH
10.0 9.0 8.0 7.0 6.0 5.0 4.0 3.0 2.0 1.0 0
(, ppm)
Chemical shift (
13- 129
13C NMR Spectroscopy
13- 130
1H and 13C NMR compared:
13- 131
1H and 13C NMR compared:
13- 132
1H and 13C NMR compared:
13- 133
1H
ClC
Cl CH2 CH3
ClC
Cl CH2CH2CH2CH2CH3
ClCH
Cl CH2CH2CH2CH2CH3
a separate, distinct
peak appears for
each of the 5 carbons
CDCl3
(, ppm)
Chemical shift (
13- 135
13C Chemical Shifts
()
are measured in ppm (
from the carbons of TMS
13- 136
13C Chemical shifts are most affected by:
13- 137
Electronegativity Effects
13- 138
Types of Carbons
CH4 0.2 -2
CH3CH3 primary 0.9 8
CH3CH2CH3 secondary 1.3 16
(CH3)3CH tertiary 1.7 25
(CH3)4C quaternary 28
Replacing H by C (more electronegative) deshields
C to which it is attached.
13- 139
Electronegativity effects on CH3
Chemical shift, δ
1H 13C
CH4 0.2 -2
CH3NH2 2.5 27
CH3OH 3.4 50
CH3F 4.3 75
13- 140
Electronegativity effects and chain length
Chemical 45 33 29 22 14
shift, δ
13- 141
13C Chemical shifts are most affected by:
13- 142
Hybridization effects
sp3 hybridized
carbon is more 36
114
shielded than sp2
138 36 126
126--142
sp hybridized
carbon is
more H C C CH2 CH2 CH3
shielded than 68 84 22 20 13
sp2, but less
shielded than
sp3
13- 143
Carbonyl carbons are especially deshielded
13- 144
Table 13.3
R2CH2 15--40
15 R2C CR2 100--150
100
R3CH 25--50
25
110--175
110
R4C 30--40
30
13- 145
Table 13.3
RCH2Br 20--40
20 RC N 110--125
110
O
RCH2Cl 25--50
25
RCOR 160--185
160
RCH2NH2 35--50
35
RCH2OH 50--65
50 O
RCH2OR 50--65
50 RCR 190--220
190
13- 146
13C NMR and Peak Intensities
13- 147
CH3 7 carbons give 7
signals, but
intensities are not
equal
OH
(, ppm)
Chemical shift (
13- 148
References
fshn..ifas
fshn ifas..ufl
ufl..edu, NA year, Introduction to Spectroscopy,
fshn..ifas
fshn ifas..ufl
ufl..edu/faculty/
edu/faculty/....../lec
/lec08
08..intro_spectr
intro_spectr..ppt
ppt.. Accessed 29
December 2014 2014..
Syafri,, Pn
Syafri Pn.. Suryati Bt Bt.., Hariono
Hariono,, EnEn.. Maywan
Maywan,, 2009
2009,, Infrared Spectroscopy..
Spectroscopy
https:://mnh
https //mnh2020..files
files..wordpress
wordpress..com/ com/2010
2010//04
04/spektro
/spektro--ir
ir..ppt
ppt. Accessed
June 2011
Wolf's, NA year, Infrared spectroscopy, Ultraviolet Ultraviolet--Visible spectroscopy,
Nuclear magnetic resonance spectroscopy, Mass Spectrometry,
www..oglethorpe
www oglethorpe..edu/ edu/...
...wolf/
wolf/...
...//8th
th%%202
202nd
nd%%2020semester/
semester/8 8Chapter
%2013
2013,, Accessed 24 December 2013 2013..
Francis A. Carey, 2003 2003,, Organic Chemistry, Fifth Edition Edition.. Copyright © The
McGraw--Hill Companies, Inc
McGraw Inc.. All rights reserved
reserved..
13- 149