All answers given so far are correct, however, i would like to shorten it down to 4
single points, why 16S is just such a good target:
1) 16s rRNA is part of the translation process, therefore present in all bacteria and by thus a perfect universal target 2) It's a multi-copy gene, which increases the detection sensitivity 3) It consists of conserved and highly variable regions, which increases its detection specificity and also allows for the use of universal primer 4) It evolves at relative constant rates, i.e. is a molecular clock, which allows to infer phylogenetic relationships To answer your second part of the question, why particularly 16S rRNA is used for species level identification, I would say this is more complicate. This statement is not true imho, especially if related to partial and not full length 16S rRNA genes. Even for full length there exists identical 16S rRNA genes among different species. So the discriminatory power of the 16S is limited and there are other targets and other technologies which are suited better to perform (sub-)species classification. This is also the difference in putting a query 16S rRNA gene in phylogenetic relation to other genes or and to taxonomically classifying it. This particular topic is also extensively and frequently discussed here on RG. Irregardless the know limitations and problems with 16S rRNA, it's still a solid target because of the aforementioned points. And what's true for the 16S is also true for the larger 23S, which offers better resolution and could be used more often in the future, maybe.