Professional Documents
Culture Documents
Steven S. Kuwahara,
Kuwahara, Ph.D.
GXP BioTechnology
BioTechnology,, LLC
PMB 506, 1669-
1669-2 Hollenbeck Avenue
Sunnyvale, CA 94087-
94087-5042
Tel. & FAX: (408) 530-
530-9338
e-Mail: stevekuwahara@yahoo.com
Website: www.gxpbiotech.org
IVTStatRep,IntPrec,Repr0710 1
VARIABILITY. I.
• Nothing is ever perfect. In fact if it is, you should
wonder why.
• It is almost impossible to control things so tightly
that variation does not happen.
• Variation occurs because of human variability and
machine wear or imperfections.
• Expect variation and be prepared to deal with it.
• Disasters, both small and large occur because
people assume perfection and plan on that basis.
• When variations occur, the plans fall apart.
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VARIABILITY. II.
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REPEATABILITY. I.
• Also known as within test precision, it is measured
by taking one sample and testing replicates, then
calculating the standard deviation of the
replicates.
• The study should be performed at high, middle
and low concentrations of the analyte.
– For a product these should be 80%, 100%, and 120% of
a unit dose.
– For analytes whose concentrations are not known, these
should be at the LLOD, ULOD and middle.
– The middle should be the target concentration for the
test, where it should operate most efficiently.
IVTStatRep,IntPrec,Repr0710 5
REPEATABILITY. II.
VARIANCE OF A SAMPLE
2 (Σ X )2
Σ X i − i
S 2
= n
n − 1
S 2
=
Σ (X i − X )2
n − 1
2 n Σ X − (Σ X
2
)2
S = i i
n (n − 1 )
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REPEATABILITY. III.
RANGE, S, AND C.V.
• The range can be related to the standard deviation
for n<16. SPC Tables have d2.
XL − Xs
s= d 2 is a tabular value.
d2
S
C.V . = X 100 = % RSD
X
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The Determination of n.
• The problem here is that you need to know how
many replicates are needed to obtain a good
estimate of the true standard deviation of the test
system.
– This number is not the same as the n for determining an
average and confidence interval.
– There are different n values depending on what you are
trying to do.
• Note that if a good n value is calculated, but you
decide to use a smaller n value for routine work,
the s that you obtain will not be as good as the one
obtained in the validation study.
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Intermediate Precision. I.
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Interaction
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INTERACTION
B3 B2
E
β
B1
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3MultSamp 19
• Source SS df MS Exp.
• Between SSc = ΣT2cJ/n - T2/N J-1 SSc/J - 1 σ2 +nσ2
• (columns)
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• T = 1,444 n=5 N = 20
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• Source SS df MS Expected
• Between (SSc) 84.8 3 28.270 σ2 + 5σ2
• Within (SSw)10.4 16 0.650 σ2
• Total (SSt) 95.2 19
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• Source SS df MS
• Between SSc = ΣT2cJ/r - T2/rc c - 1 SSc/df
• columns
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• TABLE:
• Source SS df MS Expected
• Btw. Anyl. (SSc) 320.6667 2 160.3334 σ2 + 4σ2c
• Btw. Lots (SSr) 602.9167 3 200.9722 σ2 + 3σ2r
• Residual (SS) 51.3333 6 8.5556 σ2
• Total (SSt) 974.9167 11
•
• Lot Effect Fr = 200.9722/8.5556 = 23.49 F0.05, 3, 6 = 4.36
• Analyst Fc = 160.3334/8.5556 = 18.74 F0.05, 2, 6 = 5.14
• SS = 974.9167 - 602.9167 - 320.6667 = 51.3333
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A + + + + - + + + - - - + - - - -
B + + + - + + - - + + - - + - - -
C + + - + + - + - + - + - - + - -
D + - + + + - - + - + + - - - + -
Eff.
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1 2 3 4 5 6 7 8 9
A + + + 0 0 0 - - -
B + 0 - + 0 - + 0 -
Effect
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MATHEMATICAL MODEL
SCREENING STUDIES
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Plackett-Burman Designs
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CALCULATING EFFECTS
(Taken from NBS Publications)
• The effect is the average of the positive effects minus the
average of the negative effects.
• Thus the effect of A is: (2999+3055+3049+2949)/4 –
(2904+3015+3006+2964)/4 = 3013 – 2972=+41
• A was the effect of Temperature (30o & 25o) in milliUnits
of pH so A = +0.041 pH Units.
• B was: (3006+2964+3049+2949)/4 – (2904+3015+
2999+3055)/4 = 2992 – 2993.25 = -1.25 or -0.00125 pH
unit.
• B was the effect of stirring during pH measurement given
as ON (+) or OFF (-).
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Plackett-Burman Considerations
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A B C D E F G
-BD -AD -AE -AB -AC -AG -AF
-CE -CF -BF -CG -BG -BC -BE
-FG -EG -DG -EF -DF -DE -CD
BCG ACG ABG ACF ABF ABE ABC
BEF AEF ADF AEG ADG ACD ADE
CDF CDE BDE BCE BCD BDG BDF
DEG DFG EFG BFG CFG CEG CEF
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Benefits of Confounding
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Other Considerations
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More Considerations
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REPRODUCIBILITY. I.
• REPRODUCIBILITY: . . . expresses the precision
between laboratories (collaborative studies,
usually applied to the standardization of
methodology.) quantitated as an exact value.
– One set of samples distributed to multiple sites.
– Usually not run if there is only one laboratory, but this
is unrealistic.
– There is always a second laboratory – AT THE FDA!
– In the event of a product liability suit, it will be
suspicious if the test only works well in the company’s
hands, and the results cannot be reproduced at an
independent test facility.
IVTStatRep,IntPrec,Repr0710 43
1 2 3 4 5 yi
A 7 7 15 11 9 49 9.8
B 12 17 12 18 18 77 15.4
C 14 18 18 19 19 88 17.6
D 19 25 22 19 23 108 21.6
E 7 10 11 15 11 54 10.8
Σ= 376 15.04
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SSTotal
5
= ∑∑ y −
(∑ y )
5
2 ij
2
= 636.96
ij
i =1 j =1N
25
SSTreat
1 5
= ∑ ( yi ) −
2 (∑ yij ) = 1 (49)2 + .... + (54)2 − (376)2
2
[ ]
n i =1 N 5 25
SSTreat = 475.76 SSE = SSTotal − SSTreat
SSE = 636.96 − 475.76 = 161.20
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MS Error 8 . 06
S yi = = = 1 . 27
n 5
n = 5 because there are 5 averages
There are 20 error degrees of freedom.
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Lab Comparisons
• 4 vs 1: 21.6 – 9.8 = 11.8 > 4.13 (R5)
• 4 vs 5: 21.6 – 10.8 = 10.8 > 4.04 (R4)
• 4 vs 2: 21.6 – 15.4 = 6.2 > 3.94 (R3)
• 4 vs 3: 21.6 – 17.6 = 4.0 > 3.75 (R2)
• 3 vs 1: 17.6 – 9.8 = 7.8 > 4.04 (R4)
• 3 vs 5: 17.6 – 10.8 = 6.8 > 3.95 (R3)
• 3 vs 2: 17.6 – 15.4 = 2.2 < 3.75 (R2)*
• 2 vs 1: 15.4 – 9.8 = 5.6 > 3.94 (R3)
• 2 vs 5: 15.4 – 10.8 = 4.6 > 3.75 (R2)
• 5 vs 1: 10.8 – 9.8 = 1.0 < 3.75 (R2)*
3MultSamp 49
Differences
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Df P = Pair Range
Error 2 3 4 5 6 7 8 9
9 3.20 3.34 3.41 3.47 3.50 3.52 3.52 3.52
12 3.03 3.23 3.33 3.36 3.40 3.42 3.44 3.44
15 3.01 3.16 3.25 3.31 3.36 3.38 3.40 3.42
20 2.95 3.10 3.18 3.25 3.30 3.34 3.36 3.38
30 2.89 3.04 3.12 3.20 3.25 3.29 3.32 3.35
60 2.83 2.98 3.08 3.14 3.20 3.24 3.28 3.31
100 2.80 2.95 3.05 3.12 3.18 3.22 3.26 3.29
3MultSamp 51
• BONUS MATERIAL
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