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MINERALS
IN
HAND SPECIMEN
AND
THIN SECTION
Andrew G. Christy,
Identification is further helped by the fact that many of the species are naturally
grouped into large, distinctive families whose members are much more similar in crystal
structure and some physical properties to each other than they are to non-members (e.g.
pyroxenes, garnets, amphiboles). These groups can be easy to identify. The individual species
within them are distinguished mainly on the basis of chemical composition, and may have
distinctive regions of pressure-temperature stability (blue amphiboles in blueschists, green
amphiboles in greenschists, black amphiboles in amphibolites!) but colour and associated
minerals provide very useful clues. Familiarity with a few tens of minerals or mineral groups
will allow you to identify most major minerals in most rocks rapidly, and allow you to home
in on the more obscure ones efficiently.
Mineral species are defined rigorously according to chemical composition and crystal
structure, which these days are usually determined by professional researchers using
techniques such as electron microprobe analysis and X-ray diffraction. Unlike pure end-
member chemical compounds, minerals show considerable variation in chemical
composition, which can only be understood in the context of some basic knowledge of their
crystal structure, and which contains a wealth of information about the conditions under
which they formed. However, the descriptive groundwork for the major rock-forming
minerals and ores was in place a long time before X-rays or electron beams were available, or
the subtleties of solid solutions and phase equilibria had been investigated. The 18th century
pioneers made ingenious use of physical properties to identify minerals, especially optical
properties as seen in a specially adapted microscope using linearly polarised light. The
sample preparation and apparatus involved are relatively simple and cheap, so we still use
these techniques today for initial identification and fast reconnaissance of rocks and minerals.
PETROLOGICAL CONTEXT
The first question to ask is: Is this rock sedimentary, metamorphic or igneous?
Minerals formed during diagenesis of a sedimentary rock will necessarily be those stable at
low-temperatures: clays, carbonates etc. There may be clasts that are fragments of higher-
grade rocks, and there may be biogenic minerals such as carbonates and phosphates.
Igneous rocks crystallise from a melt, and hence show a sequential fabric in which first one
mineral forms crystals, then a second, then a third, and so on. The exact order is very
sensitive to bulk composition and pressure of crystallisation. The vast majority of igneous
rocks are made up of the minerals of Bowen’s sequences: a Mg-Fe rich silicate or two which
become increasingly polymerised as rocks differentiate to more Si-rich compositions (olivine
> pyroxene > amphibole > dark mica) and Mg-Fe poor silicates which are usually Ca-rich
plagioclase in less differentiated (more mafic) rocks and Na-rich plagioclase, K-feldspar and
quartz in more felsic rocks. Alkaline rocks will have feldspathoids (eg nepheline, analcime,
leucite) instead of quartz. No rock will have these AND quartz since the combination is not
stable! Many igenous rocks contain low-temperature alteration products. Make sure that you
can tell these from the fresh high-temperature minerals.
(Chalcophile) Ores do not always fit neatly into the categories since they usually have been
formed by unusual processes, and have a highly abnormal bulk composition! “Incompatible”
elements like Cu, Pb and Zn do not go readily into the normal rock-forming minerals, and
form segregations of their own distinctive minerals. Often, they concentrate in liquids which
form veins cutting through other rocks, and may react with those rocks, causing alteration.
Primary ores of chalcophile elements are sulphides. In the oxidised zone of a deposit, these
are replaced by oxides, carbonates, sulphates etc. Ore-bearing fluids often contain
incompatible lithophile elements that crystallise as “gangue minerals” such as fluorite
(containing F) and barite (containing Ba).
Other questions that can help you use one mineral to identify others:
• What does your identified species imply about bulk composition, rock type or
protolith, and major elements present?
• Does it eliminate any incompatible minerals, or suggest other minerals which are
likely to be associated with your known species?
(i) hefting it in your hand: you rapidly develop a “feel” for specimens which are more than
about 25% denser than the crustal average, and which are likely to contain heavy (high
atomic number) elements such as barium (Ba) or lead (Pb).
(ii) breaking off small crumbs and checking for magnetism. Magnetite (Fe3O4) is the only
common strongly magnetic mineral. Other Fe minerals such as ilmenite and pyrrhotite also
show a weaker response, however. Many other black or brassy/bronzy minerals do not.
(iii) checking a small crumb for water solubility. Cubes of halite (NaCl) and sylvite (KCl)
dissolve, while cubes of fluorite do not. Most other soluble minerals are relatively rare
sulphates, also found in evaporite deposits and as mine/cave/quarry efflorescences. Tasting
minerals is no longer considered advisable, since some soluble species are quire poisonous.
(iv) a drop of hydrochloric acid (about 10% strength) will identify carbonates by their fizzing
(carbon dioxide released), and may distinguish calcite (fast reaction) from dolomite (slow
reaction).
(v) some species can produce distinctive smells. Arsenic-bearing sulphides frequently give of
a garlic-like smell of arsine when struck with a hammer. Many soluble sulphates have an
acrid reek of sulphuric acid. The more soluble sulphides liberate eggy hydrogen sulphide if
reacted with acids.
These tests all give strong clues as to the general chemical type of the mineral, and its crystal
symmetry.
Second, look at the optical properties. There is much more to these than just “colour”.
The colour of a hand specimen, the colour of a fine powder (streak), and the various colours
that can be seen in a grain mount or thin section under plane-polarised and cross-polarised
light all complement each other to give a wealth of information about the material.
These observation techniques are discussed in more detail below. Many of the
properties discussed provide clues about the type of chemical bonding and the crystal
structure of the mineral. A summary of basic crystallographic concepts and terms is provided
in Appendix A.
Before any more detailed testing, you should look at the overall form taken by a
mineral. The word “habit” is used to mean three somewhat different things:
(i) the exact combination of crystallographic forms that make up the faces of a crystal,
(ii) the overall shape of a single crystal
(iii) the form taken by aggregates of crystals.
A given mineral often has a limited range of habits. Examples of habit include:
These are the most common survivors out of a huge vocabulary of 19th century
jargon, which is gradually dying out!
The habit of crystals can be an important clue to the likely crystal symmetry.
However, because growth can be distorted by asymmetries in the environment such as
presence of neighbouring crystals, fluid currents and temperature gradients , it is not reliable.
Fortunately, angles between faces are not affected by changes in the relative size of faces,
hence the usefulness of goniometry!
Habit of Aggregates
Botryoidal: Like a bunch of grapes: partially merged balls, which are often made of
concentric shells or radiating fibres.
Columnar: Semi-parallel prisms
Reticulated: “Jackstraw”. Interlocked, intergrown prisms with gaps running between
them.
Boxwork: Honeycomb-like shells surrounding voids. The mineral probably grew in
fractures or cleavages in an earlier matrix phase, which has since dissolved
away.
Arborescent: Tree-like, like some native copper.
Dendritic: Delicate moss-like or tree-like, like some Mn oxide precipitates.
TWINNING
Twinned crystals have part of the crystal structure “on backwards” relative to the rest.
Like cleavage (below) the orientation of twin components is strongly controlled by the crystal
structure. Only a few minerals show twinning commonly on the naked-eye scale. Watch for
the cross-shaped twins of staurolite, elbow-shaped twins of rutile, simple “Carlsbad” twins
of orthoclase feldspar in which the two interpenetrating halves show different lustres and
surface texture, and stripy lamellar twinning in plagioclase. Twins are discussed further in the
section on microscopy below.
The way in which a mineral breaks offers several clues about its crystal structure. It is
not always necessary to damage a specimen in order to determine cleavage or fracture: most
mineral specimens already have a few fresh surfaces exposed.
Cleavages
Are the very flat, mirror-like surfaces produced by breakage on a plane of weak
bonding in the crystal structure. A mineral can be split easily on a plane of good cleavage
anywhere through its bulk. Cleavage is often distinguished as “perfect”, “good”, “fair”,
“poor/weak”, etc. Only perfect-to-good cleavages are easy to recognise.
A cleavage plane will display the same quality of cleavage as every other plane that is
related to it by symmetry. Therefore, it is impossible for a cubic crystal to show less than
three different orientations of cleavage plane. Note that these can look quite different
depending on your viewing direction (Fig. 4).
Basal: One unique cleavage, usually across a prism direction. Micas and other
layer silicates like chlorites, smectites, apophyllite. These all have a perfect
basal cleavage and split into very thin flakes and sheets easily.
The prismatic crystals of apatite and beryl can show a poor basal
cleavage. Prisms of topaz have a perfect basal cleavage, which gives broken
crystals their very flat, rather perfect bottom.
Prismatic: one or more orientations running along the length of a crystal. Examples
include:
1 only:
Andrew G. Christy - Mineral Identification Handbook 4th ed (2010) 8
Sillimanite forms “square” prisms with only one good cleavage parallel to one
diagonal of the “square”. It is clearly lower in symmetry than tetragonal!
Epidote minerals have one perfect cleavge {001} parallel to the usual long
directiony.
2, unrelated by symmetry:
Feldspars have two cleavages {001} and {010} that are nearly at
right-angles but are not related by symmetry to each other (two different
pinacoidal cleavages, one slightly more perfect than the other!).
Kyanite has two cleavages of very different quality at about 74o:
perfect {100} parallel to the blades and good {001} along their length, as
well as a frequent {001} parting (see below) across their length (Fig. 5).
2, related by symmetry:
Very common in chain silicates. Pyroxenes have two equivalent cleavages at
nearly 90o, amphiboles have two at nearly 120o. Hence, pyroxenes have a
“blocky” look on broken surfaces, whereas amphiboles have a splintery, flaky
look.
3, unrelated by symmetry
The pyroxenoid wollastonite has three cleavages in the same zone {h0l},
making it very splintery.
Rhombohedral: The distinctive {10-14} cleavage of the calcite and dolomite group
carbonates. Three equivalent planes all at about 100o to each other.
Partings
These can look like a cleavage but are due to the presence of twin planes, precipitates
or inclusions in thin layers (lamellae). The mineral only splits here and there, and not all
pieces will display the parting. Basal and rhombohedral parting in hematite , ilmenite and
corundum is an example.
Fracture
The type of surface obtained from a material with poor or non-existent cleavages.
Terms that are used include:
Hackly: pulled into sharp points, as happens with ductile native metals.
TENACITY
This is another mechanical property of the material which may involve destroying a
small piece of a sample! Tenacity encapsulates the ease and mechanisms by which a mineral
deforms. A mineral may be:
Brittle: ie, it breaks into small pieces if you hit it hard enough. Most minerals are
brittle.
Sectile: the mineral is just “plastic” enough to be able to whittle small turnings off
with a knife. Many softer minerals of heavy metals like Ag, Sb, Hg and Pb.
Acanthite, chlorargyrite, stibnite, calomel.
Flexible: strongly bonded in at least one direction, but loosely enough bonded in
other directions that a crystal can “flow”, and can be bent without breaking.
Elastic: A crystal springs back after being bent (within limits): mica,
but not chlorite.
Malleable: Samples can be flattened, stretched, smeared, rolled or bent into a variety of
shapes. Ductility is the ability to be drawn out into a thin wire, which goes
hand-in-hand. Most native metals such as copper, silver, gold and lead are
very malleable, but As, Sb and Bi are brittle, not malleable. No sulphides
are malleable.
HARDNESS
The empirical hardness scale devised more than a century ago by Mohs may seem
rough and ready, but it is fast and easy to use in the field or in the lab, and his benchmark
minerals were so well chosen that later quantitative measures using expensive equipment
show that hardness values 2 - 9 form a fairly uniform logarithmic progression. The hardness
standards are:
1. Talc
2. Gypsum
3. Calcite (cleavage face; rare basal faces are 21/2!)
4. Fluorite
5. Fluorapatite
6. Orthoclase
7. Quartz
8. Topaz
9. Corundum
10. Diamond
3. Wipe away powder to make sure which material is actually the one that got
scratched.
6. Porous or fine-grained materials can appear softer than they really are.
7. Intergrowths with hard minerals can appear harder than they should do.
8. The scale is not precise enough for finer divisions than half a unit to be meaningful.
COLOUR
Minerals can appear coloured if different wavelengths of visible light are absorbed
or reflected to different degrees.
The colour of a mineral may be due to :
(i) The major chemical elements that are in its crystal structure.
(ii) Trace element impurities in its crystal structure
(iii) Tinting or light scattering by small inclusions or precipitates that are scattered through it.
In translucent or transparent materials without grain boundaries, you can see quite
deep below the surface, and effects (ii) and (iii) can be quite strong. In fine-grained materials
or powders, this is not the case, and only the absorption colour from (i) is discernible.
Therefore, the colour of the fine powder, or streak, is fairly constant even when a mineral
shows a wide range of tints due to trace impurities or inclusions. The streak will only show
the colours from major or significant minor elements. For instance, quartz or fluorite can be
any colour of the rainbow in hand specimen, but the streak is always white! Slightly
translucent “opaque minerals” may give a coloured streak from a black hand specimen (eg
red streak from black hematite). Some opaque metallics with a strong reflectance colour may
look different as a streak: gold, pyrite and chalcopyrite are all yellow metallic, but while gold
gives a yellow streak, pyrite and chalcopyrite do not: their streaks are noticeably different
shades of greyish or greenish black!
You should always look at both the hand specimen colour and the streak colour.
The colour can give you an idea of what chemical elements are in the mineral:
Not all elements produce a visible colour. The geochemically common elements Na,
Mg, Al, Si, P, S, Cl, K, Ca and Ti are all colourless inthemselves. Sometimes, combinations
of elements have an effect on colour, though. For instance, Ti enhances the browns due to
Fe3+ in mica and amphibole. Also, Fe3+ is redder bonded to O2-, but yellower bonded to OH-.
Colour can appear because of electronic effects that do not relate purely to one single
element. While silicate minerals are electrical insulators, many oxides and sulphides are
semiconductors, in which visible light of some wavelengths can be absorbed to move
electrons around inside the crystal. The less energy required (smaller “electronic band gap”),
the more of the visible spectrum is absorbed:
The following are examples of colours which are not from major elements in the
crystal, and do not show in a streak:
Pink in halite:
Halophilic (“salt-loving”) bacteria and algae included inside the crystals.
Andrew G. Christy - Mineral Identification Handbook 4th ed (2010) 13
Green, violet etc in fluorite:
Colour centres and trace impurites, mainly rare earth elements.
LUSTRE
The following lustre terms relate to the texture of the mineral and directionality of reflection:
Adamantine lustre indicates high refractive index (RI) and therefore strong interaction
between the atoms of the crystal and a light ray travelling through it. This may be because of
very strong bonding (diamond, rutile) or the presence of heavy elements with lots of
electrons per atom (Pb in cerussite, Ag in chlorargyrite).
(Sub-)Metallic lustre indicates narrow (or non-existent) electron band gap, ie the material is
a semiconductor or a metal, and probably belongs to the native element (eg copper), sulphide
(eg pyrite) or oxide (eg magnetite) groups.
The standard thickness of a petrographic section is 30 microns (0.03 mm), but thicker
sections are often used (i) to identify low-birefringence minerals (see below), (ii) study fluid
inclusions inside mineral grains. You can also make temporary grain mounts of non-standard
thickness very quickly by putting loose crushed grains of a mineral on a slide in a drop of oil
or water.
The most unique feature of a petrological microscope is that the light source passes
through a polariser. Instead of vibrating in random directions transverse to the direction of
travel, the electric field component of the light is restricted to oscillate in one plane only.
For crystalline materials with less than cubic symmetry (ie, for most minerals), the
refractive index and absorption behaviour vary depending on the relative orientation of the
electric field of the light and of the crystal structure. Rotating a crystal in a beam of plane-
polarised light therefore provides much more information than looking at it, motionless, in
unpolarised light. Combined with observation between crossed polarisers, enough
information can often be obtained not only to unambiguously identify the family to which the
mineral belongs, but to pin down which species it is.
When looking at a thin section, you should always remember that a crystal can show
distinctive features in all three dimensions, but that each grain in a thin section is only a two
dimensional slice through those three dimensions. Looking at one grain rarely tells you the
full story. You need to look at several grains of the same mineral in order to reconstruct what
three-dimensional behaviour corresponds to the various two-dimensional slices.
The main optical features of a mineral that can be identified in plane polarised light
are relief, colour and microstructure.
Relief:
The edges and internal fractures of a grain stand out much more clearly (“high
relief”) if its refractive index is very different from the adjacent material, which might be
another mineral, epoxy (n = 1.54), oil, water (n = 1.33) or air (n = 1.00). Conversely, low
relief grains can appear very ghostly, vanishing into their surroundings. Immersion of a
Relief may be positive (RI higher than surroundings) or negative (RI lower than
surroundings). This may be checked by the Becke Line test (Fig. 6). Find a grain whose
margin wedges out with no bumps or chinks. Focus as sharply as you can, raise the condenser
(slightly convergent light) and partially close the aperture (less glare and bigger depth of
focus). Now, increase the distance between specimen and objective lens, watching the edge.
As it goes out of focus, the blurred image of the edge will split so that either the inside is
bright and the outside is dark, or the other way round. If the bright side moves inwards as
the objective moves away, then the relief is positive. Otherwise, it is negative.
Colour:
Because of the thinness of the section, many minerals that show a colour in hand
specimen will be colourless in thin section or nearly so. Conversely, many “black” hand
specimens show distinctive colours in a section. For instance, augite and aegirine are both
“black” clinopyroxenes in hand specimen, but augite is usually nearly colourless with a faint
brown tint in thin section, whereas aegirine shows strong green and yellow colours.
Like RI, light absorption can change depending on the vibration direction of the light
relative to the crystal structure. As an edge-on flake of biotite mica is rotated, the light is
vibrating parallel to the strongly-bonded silicate sheets of the structure in one orientation, but
across the weakly-bonded interlayers in the orientation at 90o. When light is vibrating parallel
to the layers, the RI is higher and the absorption colour is a deeper brown than when the
crystal is turned through 90 o. The wavelength of absorption may also change with absorption
direction: a hornblende may be green-blue if light is vibrating in one direction through the
crystal structure, but yellow when the crystal is turned through a right angle.
Microstructures:
Many minerals show distinctive internal inhomogeneities which can help with
identification. Examples include:
Habit:
Can you reconstruct a three-dimensional crystal shape from the two-dimensional
sections? Is the crystal equant, fibrous, prismatic, or tabular/platy? If equant, is it a cube,
octahedron or some other shape? Does it have perfect flat crystal faces (euhedral), some
rough faces (subhedral), or is it a shapeless blob (anhedral)?
Note that cleavages only open up if they are nearly vertical in the thin section. Cleavage
planes that dip shallowly (< 40o or so) are very unlikely to be visible.
Fractures:
Curved, conchoidal fractures, as seen in olivine, are also useful since they indicate
that there are no particularly good cleavages.
Twin planes:
Mistakes during growth or later deformation can cause parts of a crystal to be oriented
differently relative to the rest of it, in a crystallographic controlled fashion. The two or more
twin individuals are coherent, so the structures are bonded together at the atomic level,
without a normal grain boundary. Nevertheless, the apparent surface texture, reflectivity,
relief, pleochroic colour and birefringence of the different twin domains can all be different.
The orientation and style are all important in identification: simple twins in orthoclase,
repeated lamellar twins in plagioclase, cross-hatched twins in microcline and anorthoclase.
The lamellar deformation twins of calcite and dolomite are on different planes, and are
arranged differently relative to traces of the cleavages. Calcite twins are parallel to the edges
and long diagonal of the rhomb, while dolomite twins are parallel to the long and short
diagonals but not the edges.
Twins can occasionally be seen in hand specimen or thin section under plane
polarised light , but are most obvious in crossed polars (below).
Zoning:
Change in composition during growth can cause distinctive colour patterning in plane
polars, but is more obvious in crossed polars (below). Patterns may include sector zoning
(different faces show different colour/birefringence), concentric zoning (core and rim are
different), and oscillatory zoning (colour changes back and forth several times during
growth).
Exsolution lamellae:
Some minerals are confined to narrower composition ranges as they cool down, and
components that have become unstable precipitate as thin lamellae of a second mineral in the
first (eg Ca-rich pyroxene in Ca-poor pyroxene matrix).
Inclusions:
Some minerals are always quite clean, and devoid of internal precipitates. Some (eg
quartz, halite) often contain small inclusions of fluid, which may have both liquid and vapour
phases visible. Some (eg K-feldspar, cordierite) often contain a dusting of clay mineral
alteration products.
Intergrowth:
Some minerals readily grow intergrown through their neighbours. A coarse-scale
example is the Swiss-cheese like “sieve texture” of staurolite with fingers of quartz growing
though it. Fine-grained, wormy examples where two or more minerals have intergrown
include quartz-feldspar “myrmekite” and symplectites from mineral breakdown in dry,
high-grade metamorphic rocks (eg orthopyroxene-spinel-plagioclase symplectite by
breakdown of a garnet).
Pleochroic Haloes:
Accumulated radiation damage from small inclusions of mildly radioactive minerals
(often zircon or monazite) cause a ring of tell-tale pleochroic discolouration in some
minerals: dark brown in biotite and hornblende, yellow in cordierite.
Reaction Rims:
Some minerals have telltale alteration products as rims, veins or partial replacement,
of the bulk crystal. Olivine is often partially replaced by fine-grained, low-birefringence
serpentine. Brown biotite is often interlayed with pale green chlorite to give a stripy “choc-
mint” effect. Volcanic (not plutonic or metamorphic) hornblendes are oxidised while flying
through the air red-hot, and develop a black opaque crust of iron oxides.
The pretty colours originate when the RI varies depending on the orientation of the
light vibration in the crystal structure (ie, the crystal is birefringent). The types of variation
that are possible depends on the crystal system as follows:
Cubic/Amorphous:
RI the same for any vibration direction. No birefringence (optically isotropic). Black
when viewed in croosed polars, for any rotation of the stage.
Tetragonal/Hexagonal/Trigonal:
RI has one extreme value for vibration || z (the “extraordinary” or ε (epsilon)
direction), but has a different extreme value for vibration anywhere in the xy
plane:“ordinary” or ω (omega) directions. RI varies smoothly from one extreme to the other
for intermediate vibration directions. There is one viewing direction (down z) where the
crystal looks isotropic because the x and y
RI values are the same. This direction is the optic axis; the crystal is uniaxial because there
is one one such direction. The “optic sign” is the sign of (ε − ω) RI’s. A mineral with most of
its strong bonds in the xy plane will usually be optically negative (eg calcite), whereas a
crystal where the bonds tend to form chains running up z will usually be optically positive
(eg quartz).
Orthorhombic:
Imagine a three-dimensional polar graph in which RI is plotted as a radius against
vibration direction. Such a diagram often appears in textbooks, and is called the optical
indicatrix (Fig. 8). The indicatrix is a sphere for a cubic crystal (RI the same in all
directions), and for a uniaxial crystal it is a uniaxial ellipsoid (a shape with a circular equator
in the xy plane but with any other cross-ection an ellipse). This is a prolate ellipsoid
(football) for optically positive uniaxials and an oblate ellipsoid (M’n’M) for the optically
negative case.
Monoclinic:
Biaxial. One of the principal axes must be parallel to the mnoclinic twofold axis y. The other
two must be in the xz plane but do not have to align with x or z.
Triclinic:
Biaxial. No exact alignment required at all between the optic indicatrix and the
crystallographic unit cell!
Description of the optical properties of a crystal is likely to include the values of the
one, two or three principal RI’s and their orientation relative to the crystallographic axes.
Each principal RI may also have a distinctive pleochroic colour associated with it.
Interference Colours
When a crystal is rotated roughly halfway between extinction positions, the
interference colour due to the birefringence is at its strongest. This colour arises because
the plane-polarising light that enters the crystal travels through it not as one beam of light, but
is split into two (double refraction). In the crystal, part of the light vibrates parallel to α‘,
and the rest parallel to γ‘. The difference in refractive indices means that these two rays travel
at different speeds through the crystal: the velocity of light in a crystal is c/n, where c is the
velocity of light in a vacuum (about 3 × 108 m/s). The frequency of a given colour of light
stays the same, but the wavelengths are contracted by a factor n = α‘ or γ‘. If the wavelength
in air (or vacuum) is λ, then the wavelengths in the crystal are λ/α‘ and λ/γ‘, and after
passing through a thickness of crystal t, there is a phase difference between the waves of
2πtγ‘/λ - 2πtα‘/λ = 2π/λ × t(γ‘-α‘) = 2π/λ × tδ, where δ is the birefringence and tδ is called
the path difference or retardation (constant for all λ). Because of the phase lag, the
resulting wave that emerges from the top of the crystal is no longer plane-polarised but
elliptically polarised.
It can be shown (Appendix B) using standard trigonometrical formulae that when this
elliptically polarised light is filtered through the crossed polariser, the final intensity varies as
sin22θ sin2(ψ/2), where θ is the angle between the first polariser direction and a principal axis
of the crystal and ψ is the phase shift on exiting the crystal, ψ = 2π/λ × tδ. The sin2θ term
describes the
fading to extinction every 90o as the stage is rotated. The sin(ψ/2) term means that as
retardation increases, a colour gradually becomes more intense and then fades again
periodically (Fig. 10).
are allowed through the second polariser quite strongly. The sensitive tint marks the
end of the first order of interence colours, at a retardation of about 550 nm.
Increasing retardation produces a second order of bright rainbow colours,
finishing in a purple similar to the sensitive tint but less intense, then a slightly
washed-out rainbow of third order colours, and increasingly diffuse pearly green-
pink-grey colours from higher orders. Whereas the first and second order colours in
Fig. 10 are shown reasonably accurately, the third order is not, since the diagram uses
only three distinct colours whereas the real interference colour has contributions from
every possible wavelength. The sequence of interference colours is universal, and is
shown (usually with poor colour reproduction) on the Michel-Lévy Chart. The
sequence of interference colours is universal, and may be seen in nature in a variety of
situations where light gets reflected and partially polarised by multiple parallel
surfaces.
(i) If you know the thickness (eg 30 μm standard section), you can calculate the birefringence
rather accurately (or look it up on the Michel-Lévy chart).
(ii) If you know the birefringence, you can calculate the thickness equally accurately!
1. Is your background (the glass slide, usually) black in crossed polars? If not, then the
orientation of your lower polariser is probably set wrongly, and your colours will be
incorrect.
2. You should note that interference colours are distorted if the mineral has a noticeable
absorption colour. This may be blatant (biotite brown in crossed polars) or subtle (unusually
bright greens and yellows for epidote).
3. The birefringences quoted on the Michel-Lévy chart are the maximum values, applicable
to the maximum-birefringence viewing direction for a mineral (down ω for a uniaxial
mineral, down β for a biaxial). Other directions will show lower-order colours.
4. Is your section thickness 30μm ? Do known minerals show their usual range of colours?
5. Is your unknown grain the full thickness of the slide? Very small grains, or randomly
oriented grains stacked on top of one another, will show low-order interference colours.
The usefulness of birefringence and relief to identify different minerals and mineral
groups is shown in Fig. 11. This shows most of the minerals that it would be useful for you to
know, and should help kick-start mineral identification in the microscope.
Appendix C provides detailed supporting data for this figure. The symbols used in the
figure are tabulated in Table C3. Table C5 summarises physical and optical properties for
most of the minerals in Figure 11 as well as some additional ore minerals, which should make
hand-specimen or thin-section identification even easier for the commonest minerals and
mineral groups.
A “second specimen” can be inserted into the microscope in the form of the gypsum
plate (or sensitive tint plate), which is a cleavage slice of gypsum exactly thick enough to
give a sensitive tint interference colour. This is fitted into a holder, with the slow direction γ’
of the gypsum indicated. Looking at a specimen through this will change the interference
colour by exactly one order, upwards or downwards depending on whether the two
retardations are adding or subtracting. The colour depends on the absolute magnitude of the
retardation, so “-1st” order colours are the same as first order ones.
Since only 2nd and 3rd order colours are bright rainbow colours, whereas 1st order are dingy
grey-yellow-orange-brick red and 4th order are washed-out green and pink, it is easy to tell
these apart.
The main text of this handbook concludes with some general and some Canberra-
specific hints on where to get more information. There are many books which can supply you
with more detailed data on minerals. Most reference books describe more species than you
are likely ever to see. The academic texts are likely to include minerals that are rock-forming
in rare rock types, and give very detailed technical data that is beyond the scope of this
course, but are good on microscopic properties and mineral associations. The popular guides
are more likely to show minerals that are visually pretty but very rare, including ore minerals,
and include hand-specimen properties but little or none of the information that you need for
microscopic work. Guides are also likely to be bad translations from German or Czech
originals, so some terminology and names may not be quite right. Nevertheless, both types of
book have their place. Note that guides are much more useful if they group minerals by
streak rather than hand specimen colour! We’ll lend a few of our personal books to the lab
for the course, but if you want your own, good places to look for cheap 2nd hand books
include Lifeline Book Fairs (EPIC, Mitchell, twice yearly), and shops such as Gilbert’s
(Civic), Canty’s (Fyshwick) and Booklore (Lyneham).
A book which is pretty much the ‘Bible’ for properties of rock-forming minerals is
W.A. Deer, R.A. Howie and J. Zussmann’s Rock-forming Minerals (‘DHZ’ for short), either
in its multi-volume form or in the single-volume student edition (Introduction to the...). W.S.
McKenzie’s Atlas of rock-forming minerals in thin section (with C. Guilford) and A color
atlas of rocks and minerals in thin section (with A.E. Adams) are also fantastic.
There are a variety of excellent WWW sites out there which provide mineral data,
often via searchable databases. Particularly recommended are the following:
WWW ‘atlases’ with micrographs in thin section are easy to find by searching. For examples,
try:
www.geolab.unc.edu/Petunia/IgMetAtlas/minerals/minerals.html
ww.uwgb.edu/dutchs/petrolgy/thinsect.htm
http://sorrel.humboldt.edu/~jdl1/petrography.page.html#anchor748621
Translationally symmetry means that there is a set of vectors called lattice vectors
that relate any chose point in the crystal with other points that are translationally equivalent
(same environment, in the same orientation). Any three independent lattice vectors can be
taken to define the edges of a unit cell (which is always a paralleliped). These vectors, the
crystal axes, are usually called a, b and c. The lengths of the edges (a, b, c) and angles
between them (α = b^c, β = c^a, γ = a^b) are called unit cell parameters. Note that the three
vectors define a coordinate system that is like the familiar Cartesian coordinates, except that
in general, a, b and c could all be different, and none of the angles need to be right angles.
The mathematics involved in calculated angles and distances can therefore be much more
complicated. Whatever point in the structure is taken as a starting position, displacement by
any combination of integral numbers of a, b and c will takeyou to a point that is
translationally equivalent. The set of all such points forms a three-dimensional grid called the
crystal lattice (Fig. A1). It is important to note that lattice points relate only to each other,
and are not tied to any particular arrangement of atoms in the crystal structure!
There are a restricted range of combinations of rotation axis and reflection plane
symmetry elements that are compatible with the translational symmetry of a crystal (Fig.
A2).
Symmetry elements may force some lattice vector lengths to be equal, and/or some
angles between vectors to be 90o or 60/120o. It is usual to choose unit cell edges that
highlight this symmetry, since this makes geometrical calculations much easier. Sometimes,
this requires that the unit cell is bigger in volume than the smallest possible “primitive” cell.
For example, three different arrangements of lattice points are compatible with the symmetry
of a cube, but only one of these can have a primitive cubic unit cell. Choosing a cube-shaped
cell for the other two results in a doubly primitive body-centred cubic lattice (extra lattice
point at [1/2 1/2 1/2]) or the quadruply primitive face-centred cubic lattice (extra lattice
points at [0 1/2 1/2], [1/2 0 1/2] and [1/2 1/2 0]). It is possible to choose smaller-volume primitive
cells in both cases, but the geometries of such cells are much less convenient (Fig. A3).
The most symmetrical choices of crystal axes cause the possible types of crystal
symmetry to fall naturally into seven types called crystal systems (Fig. A4). The symmetry
of the crystal system plays a major role in determining the optical properties of a mineral.
Within each system, there are varieties called crystal classes (or “point groups”) which are
determined by whether mirror planes or a centre of symmetry are present, whether a high-
symmetry axis has perpendicular twofold axes, or is not a normal rotational axis but a roto-
inversion axis. The seven systems break down into 32 classes altogether. Symmetry
variations between classes often show up in crystal habit: pyrite, sphalerite and galena belong
to different cubic classes, and this can often be seen from the faces shown on their crystals.
Andrew G. Christy - Mineral Identification Handbook 4th ed (2010) 31
Different crystal systems also have different ranges of lattice types that are
compatible with them, The three lattices of the cubic system have already been mentioned. In
total, there are 14 such distinguishable Bravais lattices. These play some role in influencing
crystal habit, but in general are not important in determining macroscopic properties. They
play a much more important role in describing the crystal structure at the atomic level. The
same is true of the space group symmetry of the crystal. Macroscopic rotation axes and
mirror planes when examined at the atomic level may have fractional lattice-vector shifts
associated with them (screw axes and glide planes). These break down the 32 crystal classes
into a total of 230 more subtle complexions of symmetry. Although Bravais lattices and space
groups are beyond the scope of this guide, some familiarity with them is needed in order to
understand how actual crystal structures relate to macroscopic symmetry, some aspects of
diffraction by crystals, and some spectroscopic and vibrational properties of minerals.
Like the unit cells in a crystal, crystal planes repeat regularly. The spacing of a set of
planes will be constant for a particular orientation of plane. Miller indices are the standard
way of labelling such planes. These are sets of three numbers (hkl) such that h, k and l are the
number of equivalent planes that cut one repeat of the a, b and c axes respectively (Fig. A5).
In general, h, k and l are always integers. Intersection on -a, -b or -c implies a negative index,
which is usually indicated compactly by an overbar (-1 = “bar-1” ≡ -1). A set of planes that is
parallel to an axis has a corresponding index of zero. Small values of (hkl) correspond to
large plane spacings, and often to important crystal faces. For describing crystal morphology,
The edges between crystal faces are examples of crystallographic directions. These
are vectors, and can be described using the unit cell edges as a coordinate system. Direction
vectors are distinguished from Miller indices by being placed in square brackets [uvw].
Pointed brackets <uvw> indicate a “star” of symmetry-related direction vectors.
It is possible to check whether a direction is a possible edge of a face (ie, whether the
direction and face are parallel) by taking the scalar product (hkl).[uvw] = hu+kv+lw. This
value is zero if the two are parallel. A set of faces which are all parallel to one directionis
called a zone.
The factor n arises because X-rays do not diffract only at angles corresponding to
(hkl) but can also diffract at the angles for (2h 2k 2l), (3h 3k 3l) and so on. This happens even
though it is not possible to find correspondingly place d layers in a crystal structure model.
The reason is that the X-rays see the crystal structure as a continuous cloud of varying
electron density. The detailed structure can be made up by superposing sinusoidal waves at
not just the basic frequency (plane spacing) but also twice the frequency (half the spacing),
three times the frequency (one-third spacing) and so on. Physicists will recognise this as an
example of Fourier synthesis. Musicians may think of it as similar to producing a tone from a
fundamental note and harmonics.
Examples of some crystal forms are shown in the figure on the next page.
Intial plane-polarised wave has unit amplitude, and has electric field E = sin(2πz/λ)
Polariser angle is φ relative to E-W direction (crossed polar will always be N-S):
total exit wave is now elliptically polarised, and can be described in terms of three components, the α’
wave, unshifted γ’ wave and a π/2-shifted γ’ wave:
α’ = cos(α−φ) sin(2πz/λ+ κ)
γ’0 = -sin(α−φ) cosψ sin(2πz/λ+ κ)
γ’π/2 = -sin(α−φ) sinψ cos(2πz/λ+ κ)
On passing through the crossed polariser, each of these have projected components parallel to the N-S
crossed polar:
with amplitudes:
1
= /4 sin22α.(2 − 2cosψ)
1
= /2 sin22α.(1 − cosψ)
= sin22α. sin2(ψ/2)
= {1 − 2(1 − cosψ).cos2α.sin2α}
= 1 − sin22α. sin2(ψ/2)
Additional columns give atomic numbers (Z), atomic masses (M), siderophilicity index (S: see
notes, below), commonest coordination numbers to oxygen (CN), main naturally occurring
oxidation states (OS).
Element Z M S CN OS
Ag Silver (Argentum) 47 107.9 7 2 0, +1
Al Aluminium 13 27.0 1 4-6 +3
As Arsenic 33 74.9 6 4 -3, 0, +3, +5
Au Gold (Aurum) 79 197.0 8 4 0, +1, +3
B Boron 5 10.8 1 3-4 +3
Ba Barium 56 137.3 2 9-12 +2
Be Beryllium 4 9.0 1 4 +2
Br Bromine 35 79.9 n/a n/a -1
C Carbon 6 12.0 0 3 -4, 0, +4
Ca Calcium 20 40.1 2 6-9 +2
Ce Cerium 58 140.1 1 9-12 +3, +4
Cl Chlorine 17 35.5 n/a n/a -1
Co Cobalt 27 58.9 5 6 +2, +3
Cr Chromium 24 52.0 2 6 +3, +6
Cs Cesium 55 132.9 2 9-12 +1
Cu Copper (Cuprum) 29 63.6 6 4-6 0, +1, +2
F Fluorine 9 19.0 n/a n/a -1
Fe Iron (Ferrum) 26 55.9 4 6 0, +2, +3
Ga Gallium 31 69.7 5 4-6 +3
Ge Germanium 32 72.6 5 4-6 +4
H Hydrogen 1 1.0 2 1-2 +1
Hf Hafnium 72 178.5 1 6-8 +4
Hg Mercury (Hydrargyrum) 80 200.6 7 2-6 0, +1, +2
I Iodine 53 126.9 1 3 -1, +5
K Potassium (Kalium) 19 39.1 2 9-12 +1
La Lanthanum 57 138.9 1 9-12 +3
Li Lithium 3 6.9 2 4-6 +1
Mg Magnesium 12 24.3 2 6 +2
Mn Manganese 25 54.9 3 6-8 +2, +3, +4
Mo Molybdenum 42 95.9 5 4-6 +4, +6
N Nitrogen 7 14.0 0 3 -3, 0, +5
Nb Niobium 41 92.9 2 6 +5
Nd Neodymium 60 144.2 1 9-12 +3
Ni Nickel 28 58.7 5 6 0, +2
Na Sodium (Natrium) 11 23.0 2 6-12 +1
O Oxygen 8 16.0 n/a n/a -2
P Phosphorus 15 31.0 0 4 +5
Pb Lead (Plumbum) 82 207.2 5 4-12 0, +2, +4
Pt Platinum 78 195.1 8 6 0, +2, +4
Rb Rubidium 37 85.5 2 9-12 +1
S Sulphur 16 32.1 0 4 -2, 0, +6
Sb Antimony (Stibium) 51 121.8 6 4-6 -3, 0, +3, +5
Sc Scandium 21 45.0 1 6 +3
Se Selenium 34 79.0 6 3 -2, 0, +4
Si Silicon 14 28.1 0 4 +4
Sn Tin (Stannum) 50 118.7 4 6 +2, +4
Sr Strontium 38 87.6 2 9-12 +2
Ta Tantalum 73 181.0 2 4-8 +5
Te Tellurium 52 127.6 6 4-6 -2, 0, +4 , +6
Th Thorium 90 232.0 1 8 +4
Ti Titanium 22 47.9 2 6 +4
Tl Thallium 81 204.4 5 6 +1, +3
U Uranium 92 238.0 1 6-8 +4, +6
V Vanadium 23 50.9 3 4-6 +3, +4, +5
W Tungsten (Wolfram) 74 183.9 2 4-6 +4, +6
Y Yttrium 39 88.9 1 6-9 +3
Zn Zinc 30 65.4 5 4-6 +2
Zr Zirconium 40 91.2 1 6-8 +4
this index is not relevant to elements which do not bond to oxygen because they only form anions.
2. Coordination number gives an indication of the size of the atom. Bigger cations have room for
more oxygen neighbours, unless there is a good reason why they can’t have them. Not all oxygen
coordination numbers and oxidation states are included. When there is more than one oxidation
state, the cordination number range refers to the oxidation state that is shown in bold.
3. Elements in negative oxidation states are usually in the form of “-ide” anions such as sulphide
(S2-), chloride (Cl-), selenide (Se2-), bromide (Br-), telluride (Te2-), iodide (I-). Carbon has the formal
oxidation state -4 in methane (CH4). Nitrogen has -3 in ammonia and compounds of the ammonium
cation, NH4+.
Complex oxyanions are formed by elements in high oxidation states. These are usually “-ate”
anions (eg nitrate, NO3-, and sulphate SO42- from N5+ and S6+ respectively). Some anions are formed
by elements in oxidation states other than their highest: these may be distinguished by being called
“-ites” rather than “-ates”. For instance, As3+ forms the arsenite anion AsO33-, while As5+ forms
arsenate AsO43-, and As3- forms arsenide As3-!
Concentrations are given in parts per million by mass. Notice the rapid fall-off down the columns
means that only a few elements are really common, but these are different in different parts of the
Earth! The carbonaceous chondrite values are those of cold, undifferentiated solid Solar System
material that retains much of its volatile C, H, S. Loss of these during formation of the Earth, and
loss of Fe and Ni to the core, put all of these elements much lower in the mantle list, which is
dominated by O, Mg and Si. Hence, upper mantle mineralogy is dominated by the Mg silicates
olivine and orthopyroxene. The relative incompatibility of Al, Ca, Na and K in mantle minerals
means that they become much more important in the crust, so the main silicates in the crust are
feldspars and their low-temperature equivalents. Note that seawater concentrates even further some
soluble species such as Cl and B, which are therefore important in evaporite minerals although rare
otherwise.
Data is taken from www.webelements.com, except the primitive mantle estimates, which are from
Palme, H. and O'Neill, H. (2004) Geochemical Estimates of Mantle Composition, in Treatise on
Geochemistry. Ed. R. W. Carlson, Elsevier, Oxford, 1-38pp.
This alphabetically arranged index includes all the minerals of Fig. 11 and the other tables
of this Appendix, plus some extra relatives and associates and the names of some mineral groups.
Some chemical end-members such as ferrosilite are rare as minerals, but may be encountered
labelling the corners of chemographic diagrams. The two/three-letter symbols are those
recommended by the International Mineralogical Association, are frequently used in the literature,
and are becoming increasingly standardised. These are the symbols used in Figure 11 of the main
text.
Some chemical formulae for a general group replace specific cations by ‘A’ (larger cation
such as Ca), ‘B’ (medium-sized cation such as Mg) or ‘T’ (small, tetrahedrally coordinated cation,
usually Si or Al). Anionic complexes have been enclosed in square brackets for clarity. The
oxidation state of Fe is +2 unless otherwise indicated.
The low-temperature zeolite and clay minerals are usually too fine-grained for identification
in thin section. However, zeolites may form large crystals as vesicle fills in mafic volcanic rocks. A
couple of the large number of zeolite species are listed to give examples of typical formulae.
his table includes all species that you are likely to see in the course, plus a few more. Comparison
of actual specimens with their descriptions here should help to give you an idea of what the various
terms for cleavage, lustre, habit etc mean, and help you to get to know some of the commonest
minerals quickly. Less common minerals are tyhen easier to identify by comparison with the ones
that you already know. The table is arranged by anion type, in the opposite order to many
textbooks, so that it starts with the very common species quartz and the feldspars.
Note how many of the mineral species listed here fall into family groups (e.g. pyroxenes,
amphiboles, micas, garnets) with distinctive family characteristics.
The table has been split into two parts, respectively for properties that can been seen in hand
specimen properties and those visible in thin section. The ‘habit’ and ‘cleavage’ columns are
duplicated in both.
Serpentine Layer 2.5-5 various, greasy, silky colourless platy, fibrous, depends on
*Length slow/fast information is asterisked if the ‘length’ referred to is actually the width of a platy
crystal. Be very careful about checking the 3-D habit of crystals when using this information.
Most minerals are brittle. Some that show other properties are:
Flexible and elastic: normal micas such as biotite and muscovite.
Flexible but not elastic: chlorite, talc, pyrophyllite, graphite, molybdenite, orpiment
Sectile: stibnite
Quartz, feldspars and calcite all have densities near 2.6-2.7 g/cm3, so this is a very typical figure for
minerals of the continental crust. Some species that are significantly denser, which is very
noticeable if they are transparent or nonmetallic. Others, usually hydrous minerals, are distinctly
light. In more detail:
Density:
2.0-2.5: Tridymite/Cristobalite, Leucite, Sodalite, Zeolites, Brucite, Gibbsite, Gypsum, Halite,
Graphite, Sulfur
3.5-4.5: Fayalite, Ferrosilite, Titanite, Garnet, Topaz, Kyanite, Staurolite, Chloritoid, Periclase,
Corundum, Spinel, Goethite, Chalcopyrite, Sphalerite, Celestine, Siderite, Rhodochrosite,
Strontianite, Stishovite, Diamond
4.5-5.5: Zircon, Hematite, Ilmenite, Rutile, Magnetite, Chromite, Pyrite, Pyrrhotite, Bornite,
Molybdenite, Stibnite, Baryte, Monazite
5.5-9: Cassiterite, Galena, Bismuthinite, Arsenopyrite, Cinnabar, Nickeline, Cerussite, Native Iron,
Native Copper