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36 Ting, C.T. et al. (1998) A rapidly evolving 44 Akashi, H. et al. (1998) Mutation pressure, natural 53 Charlesworth, D. and Charlesworth, B. (1998)
homeobox at the site of a hybrid sterility gene. selection, and the evolution of base composition in Sequence diversity: looking for effects of
Science 282, 1501–1504 Drosophila. Genetica 103, 49–60 recombination rates. Curr. Biol. 8, R658–661
37 Schmid, K.J. et al. (1999) Large number of 45 Duret, L. and Mouchiroud, D. (1999) Expression 54 Przeworski, M. et al. (2000) Adjusting the focus on
replacement polymorphisms in rapidly evolving pattern and, surprisingly, gene length shape codon human variation. Trends Genet. 16, 296–302
genes of Drosophila: implications for genome-wide usage in Caenorhabditis, Drosophila and 55 Huntley, M. and Golding, G.B. (2000) Evolution of
surveys of DNA polymorphism. Genetics 153, Arabidopsis. Proc. Natl. Acad. Sci. U. S. A. 96, simple sequence in proteins. J. Mol. Evol. 51,
1717–1729 4482–4487 131–140
38 Hughes, A. et al. (1990) Positive Darwinian 46 Keightley, P.D. and Eyre-Walker, A. (2000) 56 Long, M. and Langley, C.H. (1993) Natural
selection promotes charge profile diversity in the Deleterious mutations and the evolution of sex. selection and the origin of Jingwei, a chimeric
antigen-binding cleft of class I major- Science 290, 331–333 processed functional gene in Drosophila. Science
histocompatibility-complex molecules. Mol. Biol. 47 Kondrashov, A.S. (1995) Contamination of the 260, 91–95
Evol. 76, 515–524 genome by very slightly deleterious mutations – 57 Long, M. et al. (1995) Intron phase correlations
39 Yang, Z. et al. (2000) Codon-substitution models for why have we not died 100 times over? J. Theor. and the evolution of the intron/exon structure of
heterogeneous selection pressure at amino acid Biol. 175, 583–594 genes. Proc. Natl. Acad. Sci. U. S. A. 92,
sites. Genetics 155, 431–449 48 Keightley, P.D. and Eyre-Walker, A. (1999) Terumi 12495–12499
40 McAllister, B.F. and McVean, G.A.T. (2000) Neutral Mukai and the riddle of deleterious mutation rates. 58 Brookes, A.J. et al. (2000) HGBASE: a database of
evolution of the sex-determining gene transformer Genetics 153, 515–523 SNPs and other variations in and around human
in Drosophila. Genetics 154, 1711–1720 49 Eichler, E.E. (1998) Masquerading repeats: genes. Nucleic Acids Res. 28, 356–360
41 Parsch, J. et al. (2000) Deletion of a conserved paralogous pitfalls of the human genome. Genome 59 Long, M. et al. (1999) Origin of new genes and
regulatory element in the Drosophila Adh gene Res. 8, 758–762 source for N-terminal domain of the chimerical
leads to increased alcohol dehydrogenase activity 50 Charlesworth, B. et al. (1994) The evolutionary gene, jingwei, in Drosophila. Gene 238, 135–141
but also delays development. Genetics 156, 219–227 dynamics of repetitive DNA in eukaryotes. Nature 60 Eisen, J.A. (2000) Horizontal genome transfer
42 Chen, Y. et al. (1999) RNA secondary structure and 371, 215–220 among microbial genomes: new insights from
compensatory evolution. Genes Genet. Syst. 74, 51 Anagnostopoulos, T. et al. (1999) DNA variation in complete genome sequences. Curr. Opin. Genet.
271–286 a 5-Mb region of the X chromosome and estimates Dev. 10, 606–611
43 Jenkins, D.L. et al. (1995) A test for adaptive of sex-specific/type-specific mutation rates. Am. J. 61 Palmer, J.D. et al. (2000) Dynamic evolution of
change in DNA sequences controlling Hum. Genet. 64, 508–517 plant mitochondrial genomes: mobile genes and
transcription. Proc. R. Soc. London B Biol. Sci. 261, 52 Mullikin, J.C. et al. (2000) An SNP map of human introns and highly variable mutation rates. Proc.
203–207 chromosome 22. Nature 407, 516–520 Natl. Acad. Sci. U. S. A. 97, 6960–6966

Design of reserve networks and the


persistence of biodiversity
Mar Cabeza and Atte Moilanen

Sophisticated computational methods have been developed to help us to problem: given a limit on cost or area, select the
identify sets of nature reserves that maximize the representation of regional combination of sites that maximizes the
diversity, but, until recently, the methods have not dealt explicitly and directly representation of natural features (Box 2).
with the main goal of reserve networks, that of the long-term maintenance of
biodiversity. Furthermore, the successful application of current methods Advances in site-selection algorithms
requires reliable information about species distributions, which is not always Variants of these two problems have been tackled
available. Recent results show that data quality, as well as the choice of with different site-selection algorithms (Box 3). By
surrogates for biodiversity, could be critical for successful reserve design. the early 1980s, several authors1,3,4 independently
Because of these problems and a lack of communication between scientists developed iterative heuristic algorithms that attempt
and managers, the impact of computational site-selection tools in applied to solve the problem of combining sites into
conservation planning has been minimal. representative and efficient networks based on the
concept of COMPLEMENTARITY5,6. Subsequently, authors
Site-selection algorithms are computational methods began using tools from the field of OPERATIONS RESEARCH
Mar Cabeza*
Atte Moilanen that have been developed to identify a set of nature to contribute to the development of reserve design
Dept of Ecology and reserves containing as many species as possible, that algorithms. In the 1990s, discussions about the
Systematics, Division of is, methods maximizing the REPRESENTATION (see optimality properties of site-selection algorithms
Population Biology,
PO Box 17
Glossary) of species diversity1–3. For this purpose, two became a central theme in the literature, which
(Arkadiankatu 7), general representation problems have been concluded that heuristic algorithms do not guarantee
University of Helsinki, formulated. First, the minimum area problem: select an optimal minimum area solution, in contrast to
FIN-00014 Helsinki,
the sites that represent all NATURAL FEATURES a given exact algorithms (such as integer programming
Finland.
*e-mail: number of times with a minimum number of sites, techniques)7 (Box 3). Several studies2,3 have
cabeza@cc.helsinki.fi area or cost (Box 1). Second, the maximum coverage compared the optimality of different site-selection

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Review TRENDS in Ecology & Evolution Vol.16 No.5 May 2001 243

Box 1. Minimum area problem Box 2. Maximal coverage problem

Minimize number of sites, total area, or cost, to represent all natural Maximize the representation of natural features
features (e.g. species) given a limit for the number of sites, cost or area
A is an M sites x N natural features matrix whose elements aij are a measure Let S be the set of sites included in the site
of the occurrence of the feature j in site i. Let Ii ∈{0,1} be an indicator variable selection, N is the number of features. The object of
which has value 1 if site i is included in the selection and 0 otherwise. Let optimization is to:
each site have cost ci, and a desired representation level rj.. The
N
optimization problem is: Maximize Eqn 1:
∑ V j (S) [1]
j =1
M
Minimize Eqn 1: ∑ ci Ii [1]

∑ ci
i =1 subject to Eqn 2: [2]
≤R
i ∈S
M
subject to Eqn 2: ∑ aij Ii ≥ rj [2] Vj (S) is the value of feature j in selection S. In the
i =1 simplest form, Vj (S) is 1 if the desired
for all j (each feature is represented at least rj times). representation level for feature j is achieved in
Particular problems of representation can be derived from this general casea: selection S and 0 if it is not. Vj (S) could also be a
(a) Minimize the number of sites needed to represent features: measure of the predicted persistence of species j
ci = 1 all sites are of the same size or cost on selection S. The cost of patch i, ci , can be defined
aij = 0 or 1 if only the presence or absence of the feature is considered as 1 (if only the number of patches counts), as the
rj = 1 gives the basic single representation problem patch area, or as the real patch cost depending on
If rj ≥ 1 we have the multiple representation problem the objectives of optimization. R is the maximum
(b) Minimize the total area needed to represent each feature at a level rj. available resource, counted in the same units as ci.
ci = areai the cost of a site is its area (See Ref. a for detailed formulations.)
aij = area covered by feature j in site i Reference
rj = required representation level in area units a Arthur, J.F. et al. (1997) Finding all optimal solutions to the
(c) Minimize total cost to represent features. reserve site selection problem: formulation and
as (a) but the cost of a site is its precise real cost: ci = costI. computational analysis. Environ. Ecol. Stat. 4, 153–165

Reference
a Pressey, R.L. et al. (1997) Effectiveness of alternative heuristic algorithms for identifying
indicative minimum requirements for conservation reserves. Biol. Conserv. 80, 207–219 times for large problems (hundreds or thousands of
sites or patches), and because they cannot solve
certain complex problem variants, including those
algorithms, giving mixed results. Although iterative with nonlinear object functions2. Nevertheless, an
heuristic algorithms are often suboptimal, the increasing fraction of conservation planning problems
difference to the solution given by an exact algorithm can be solved using exact algorithms9, and there is
depends on the data set2,3. currently less emphasis on optimality, which is no
The first systematic study comparing the solutions longer a problem in many cases. Integer
found by different algorithms in relation to data-set programming is preferred for both theoretical
characteristics, such as rarity or nestedness of exercises and when the size of the data set and the
features, size variation of the selection units and the conservation goal are appropriate9–11, whereas
size of the data set, has only recently been conducted8. iterative heuristics are employed when solutions are
The number of rare features (land types in this study) required in seconds or minutes, and in conservation-
in the data was an important factor in explaining planning projects requiring close interaction with
differences between iterative heuristics and integer decision makers4,12. Advanced heuristics, such as
programming: the larger the number of rare features, stochastic global search methods (Box 3), appear to
the more sites are needed and the closer are their represent a good compromise; these methods can deal
solutions. For instance, a high level of endemism relatively quickly with complex problems and their
forces the initial inclusion of many sites into the solutions are much less suboptimal than are those
reserve network and, consequently, the remaining given by the simplest iterative heuristics13. Also, in
optimization problem becomes computationally recent reserve design literature, increasing attention
simpler (and the results of different algorithms closer has been given to the use of multicriteria methods4,13.
to each other). Size variation among the sites also Following algorithmic improvements and a great
appeared to reduce suboptimality when the goal was increase in hardware speed, topics other than
to minimize the total reserve area rather than the algorithm efficiency and optimality are receiving
number of sites. increased attention in the current reserve design
Although integer programming techniques should literature. These include the critical issue of how to
be preferred for their guaranteed optimality, it has deal with long-term persistence of biodiversity, the
been argued that they are not convenient, because sensitivity of algorithms to data-set quality, the choice
they may require unacceptably long computation of surrogate species for reserve design, and how to

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244 Review TRENDS in Ecology & Evolution Vol.16 No.5 May 2001

Box 3. A phylogeny of site-selection algorithms


Ordinary single criterion optimization Iterative heuristics are very fast to be defined by setting limits to all
minimizes (or equivalently maximizes) compute, but they can fail to find an objectives except one.
one quantity. Single criterion optimization optimal solution even for simple Note that all the methods that have been
methods that have been used for site- problemsb,c. Stochastic global search used for the single criterion case can be
selection problems can be categorized techniques seek good solutions using used to solve ‘subproblems’ in multicriteria
into exact and inexact methods. intelligent randomization. These site-selection algorithms. However, in
The branch-and-bound methoda of techniques are faster than integer multicriteria optimization, the critical phase
integer programming is an exact method. programming, but slower than iterative of optimization, is the determination of the
It considers all possible site selections heuristics. They cannot guarantee criteria and the weights given to them.
using implicit enumeration, and optimality, but various difficult
guarantees to find the best solution(s). optimization problems have been solved References
Branch-and-bound methods require an successfully using stochastic global search a Nemhauser, G.L. and Wolsey, L.A. (1988)
Integer and Combinatorial Optimization, John
exponentially increasing number of techniquesd.
Wiley & Sons
iterations as a function of problem size, Scoring methods are multicriteria b Underhill, L.G. (1994) Optimal and suboptimal
and therefore dataset size limits their optimization methodse,f that consider reserve selection algorithms. Biol. Conserv. 70,
applicability. several objectives simultaneously (number 85–87
Inexact heuristics (optimality is not of sites, cost or persistence, etc.). Typically, c Pressey, R.L. et al. (1996) Optimality in reserve
selection algorithms: when does it matter and
guaranteed and there is no estimate of the tradeoffs have to be made between different
how much? Biol. Conserv. 76, 259–267
quality of the solution) can be divided into objectives; for example, low cost might d Bäck, T. et al. (1997) Handbook of Evolutionary
iterative heuristics and stochastic global prevent full biodiversity representation. Computation, Oxford University Press
search methods. Iterative heuristics A multicriteria optimization problem e Steuer, R. (1986) Multiple Criteria
repeatedly apply a set of rules, such as ‘add can be transformed into a single criterion Optimization: Theory, Computation and
Application, John Wiley & Sons
the site that most complements the current problem by taking a weighted sum of the
f French, S. (1988) Decision Theory: An
selection’, with no randomization used different objectives. Alternatively, a Introduction to the Mathematics of Rationality,
except occasionally for breaking ties. constrained single criterion problem can Ellis Horwood

establish conservation-scheduling priorities given the truly persisted10,16,17. A few recent studies have
subset of selected sites. demonstrated how efficient reserve networks
(efficient in representing numbers of species relative
Performance of existing reserves to the cost) might not protect the original set of
The performance of existing reserves has often been features for many years, because species go locally
assessed by comparing them to the minimum number extinct and colonize sites regardless of whether the
of sites (or area) needed to represent all diversity site is included in the reserve network. Table 1
(efficiency sensu Pressey and Nicholls14), even though summarizes results from three studies that
minimal site number might not have been the original analysed how well different reserve design
goal of the reserve design. In practice, reserves have strategies would have maintained diversity over
frequently been selected in an ad hoc manner12,15, time. The first two studies18,19 evaluated the
without the use of explicit criteria. This explains the minimum area strategy in its ability to maintain
observation that fewer sites are needed to represent all diversity. Both concluded that species turnover was
diversity if the selection assumes no existing reserves high, and that a large fraction of species could be lost
rather than beginning by including existing reserves15. even in a short time (Table 1). The third example11
Although efficiency can be used as a measure of analysed the long-term performance of several
the performance of an algorithm searching for the design strategies using the Common Birds Census
minimum set (to compare solutions given by different data set in Britain. This is the first study that
algorithms for the same data set), the success of a suggests ways of accounting for species turnover,
reserve network depends on the initial conservation and it concludes that fewer species are lost if sites
objectives and, hence, success can and should be are selected according to population density or local
measured in different ways. For example, Araújo16 abundance. The density strategy might avoid
and Rodrigues et al.10 have measured the success of selecting large sites with large populations, and
existing reserves by considering the gap between favour smaller sites with denser populations, and it
current and complete representation, concluding might, therefore, be a relatively efficient approach
that, although the existing protected areas do not (Table 1). However, more studies are needed to
sample all species, they do provide a better result establish whether focusing on good-quality (densely
than does choosing areas at random populated) but possibly small sites would be a good
The assessment of the success of a reserve in general strategy for reserve design. METAPOPULATION
terms of persistence requires monitoring over time THEORY suggests that many sites are needed for
to establish whether the conservation targets have species living as metapopulations in networks of

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Review TRENDS in Ecology & Evolution Vol.16 No.5 May 2001 245

Table 1. Studies demonstrating how species tend to be lost from reserves in minimum set designsa

Study Criteria Species loss (%)b Reserve size Ref.


To minimize the number of sites that cover At least once 36.0 18 sites 18
all plant species from limestone pavements At least twice for species with >1 34.0 22 sites
(11 yr; 50 spp.; 77 sites)c population (78% of species)

For a combination of boreal lakes, find the Maximum number of plants 18.0 5 sites 19
minimum area that covers: Maximum restricted range diversity 18.0 5 sites
(63 yr; 32 spp.; 25 sites)

Minimize reserve network area to selectd All species at least once Min. Max. Mean Min. Max. Mean 11
(10 yr; 47 spp.; 56 sites) All species at least at the site where 4.0 12.0 8.0 400 750 556.25 (ha)
they are most abundant 0.0 4.0 2.7 1500 2250 1831.25 (ha)
All species at least at the site where 0.0 5.0 3.2 1000 1800 1312.50 (ha)
they have the highest density
aStudies analyzing the proportion of species that would have been successfully protected if the selection of the reserve had been done with the occupancy information at

some previous point.


bSpecies loss factors from Refs 18 and 19 are approximate values measured from graphs.

cTime intervals, number of features (species) and number of available sites.

dResults show minimum, maximum and mean data from eight analyses of data sets sampled ten years apart from a temporal data set of 20 years.

small patches, because the local extinction rates until the required level of persistence probability for
would inevitably be high20. each species is reached. The difficult part here is how
to obtain the probabilities of persistence. Araújo and
Persistence of biodiversity in reserve networks Williams29 used niche-based regression models to
Researchers now agree that biodiversity persistence estimate the local probabilities of occurrence of
should be considered in reserve-network species, which were then transformed into
design4,12,13,17,21–23. So far, only a few studies have probabilities of persistence with information on
actually done this. Some have focused only on local threat and susceptibility of species to the threats.
(within site) persistence11,21,24,25, whereas others have
looked at regional (within reserve network) Spatial reserve design
persistence2,18,26. Spatial population dynamics, Economic considerations might require compact
however, has yet to be treated explicitly in site- reserves because the cost of management often scales
selection literature. Nevertheless, the general idea of more closely with the length of reserve boundary than
keeping sites close together has been influential in with its area13. Moreover, a compact reserve increases
spatial reserve design. local persistence by reducing edge effects30 and, at the
same time, having individual sites close together
Local and regional persistence facilitates dispersal and recolonization of empty
Several approaches to deal with local persistence habitats, which increases the probability of regional
have been suggested: persistence20,31. A few studies have considered the
(1) Only selecting sites larger than a threshold size clustering of sites by
when there is a known size limit for the presence of • Including a rule that chooses sites close together
species (e.g. the Schonewald-Cox index gives an when breaking ties in iterative algorithms32,33.
indication of the minimum area necessary for finding • Minimizing a linear combination of reserve
particular mammal species)25. network area and boundary length13.
(2) Basing site selection on abundance, either by Tight clustering of sites might not always be the
prioritizing sites with the largest populations11, or by best way to increase persistence when REGIONAL
using population density as an indicator of site STOCHASTICITY is strong. Diseases, weather
quality11,21,27. catastrophes and forest fires, etc. can increase the
(3) Running population viability analysis for each risk of simultaneous extinction of sites that are
species24. As far as we know, this approach has not located very close to each other34. One ad hoc solution
been used in a multispecies site-selection exercise, is to require multiple representations at sites
undoubtedly owing to the huge amount of high- separated by a minimum distance while maximizing
quality data that it requires. reserve compactness13.
If the focus of reserve design is on the regional Despite these approaches to promoting
persistence (i.e. maintain each species within the persistence, site-selection methods are essentially
reserve network, even if local extinctions occur), a based on static criteria, because they mostly use
preferred approach (assuming that the cost allows it) information based on a single snapshot of species
is to include multiple representations of each natural distributions. Spatiotemporal dynamics are not
feature within the set of sites2,18,28. Another recent explicitly taken into account, even when species
study26 proposed a method that combines distributions are known to change over time. Given
probabilities of local persistence among sites directly, that many communities show high turnover18, the

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246 Review TRENDS in Ecology & Evolution Vol.16 No.5 May 2001

selected networks and decreased efficiency because


Glossary
more sites are needed to achieve the goal when the
Complementarity: Property of two (sets of) sites that occurs when some of the natural features level of deletion increases. The second study28
in a site differ from the features in another site. When (sets of) sites are highly complementary,
assessed the differences in selections in terms of the
they contain (almost) nonoverlapping representation of natural features.
Irreplaceability: A measure of the likelihood that the site will be required as part of a reserve percentage of the initial goal achieved (i.e. five
network that satisfies a specific conservation goal. A site is highly irreplaceable when it includes representations of each species from the complete
unique or rare natural features. data set covered by the set selected with the reduced
Metapopulation theory: In general, spatial population dynamics of a species living in a
data). In general, algorithms turned out to be
spatially structured, possibly highly fragmented, landscape. A metapopulation may persist
regionally in a stochastic balance between extinctions of local populations and recolonizations relatively robust to randomly distributed reductions
of empty habitat patches. of records (up to 80–90% of the goal achieved) but
Natural features: Attributes (i.e. species, plant communities or landscape types, etc.) valued much less so when the missing data were
for a conservation goal.
concentrated in particular sites or taxa.
Operations research (OR): A mathematical discipline concerned with the construction,
mathematical analysis and solving of decision problems. OR seeks the determination of the best The important conclusion is that inventory efforts
(i.e. optimal) course of action under limited resources. should be distributed as broadly as possible among
Regional stochasticity: Spatially correlated environmental stochasticity, caused for example sites and taxa. In practice, the problem is often that
by weather phenomena. Regional stochasticity induces correlation into local population
available data on species abundances and
dynamics and may cause simultaneous extinctions of closely spaced populations.
Representation: The extent to which required natural features occur within a (set of) sites. distributions are biased towards preferred sites or
Vulnerability: Risk of a site being transformed in a way that (some) natural features are lost towards a few charismatic species. The use of
from the site. umbrella species as surrogates for poorly known
regional biota has been a common conservation
strategy38, comparable to the use of indicator taxa in
sites selected by a static approach might not protect reserve design22. Andelman and Fagan39 evaluated
as many species in the long term as the outcome of the several umbrella species schemes and found that
algorithm would have us believe. Awareness of this none performed any better than did randomly
problem has been growing and several selected species from the database. Williams et al.40
authors13,17,21,23 have called for the integration of reached the same conclusion in a similar study,
spatial population modelling in reserve network evaluating the use of flagship species to represent
design, which would require more interaction other taxa. Williams et al.40 also found that areas
between disciplines such as landscape ecology, selected using flagships were no better for
metapopulation biology and conservation biology. representing biodiversity than was randomly
In their recent study, Araújo and Williams29 selecting the same number. Furthermore, sets of
attempt to deal with spatial dynamics in an implicit complementary sites for different taxa often do not
way. They use spatial aggregation measures to overlap16,22,41,42, although results obtained in
predict species occurrences, and they interpret spatial Uganda43 do seem encouraging. In Uganda, different
correlations as a result of colonization processes. The taxa show similar biogeography, and therefore,
selected sites for the data set used in their study were representative sets of sites for one taxon also
also clumped together, supporting the spatial design represent well other taxa. The conclusion from these
approaches previously described. We are not aware, few studies is that the degree of overlap among taxa
however, of any studies incorporating spatial varies depending on the geographical region and the
dynamics explicitly in site-selection algorithms and taxa being considered.
the problem remains a major challenge for future Another approach is to use habitat diversity as a
reserve network designs. The critical part in such a surrogate for species diversity. Although the approach
study is likely to be the acquisition of properly seems promising, results from recent studies40,44,
parameterized species-specific models of spatial using species and environmental data for Europe44
dynamics for multiple species. and Africa40 are not encouraging. When applied to the
European data, the approach only performed well for
Data uncertainty plants, with other taxa not showing a consistent
While site-selection algorithms continuously pattern of representation. The unrepresented species
improve, the quality of the biodiversity distribution mainly had restricted range sizes, were narrow
data needed for applying these methods remains poor. endemics, or were at the edges of their ranges. For the
In some cases, with incomplete biodiversity surveys, African data, using ecoregions to select sites was a
data interpolation techniques have been used to better strategy to represent birds and mammals than
approximate species distributions3,35,36. was using flagships, but still not as good as using data
Risks associated with the use of incomplete data for all birds and mammals.
sets in site-selection procedures have been recently
investigated28,37. In both studies, data sets were Where to go from here
systematically modified to assess the effects of After two decades of research, site-selection
missing sites, missing taxa and missing records on algorithms have improved to the point where they can
various variables. The first study37 concluded that deal with a wide variety of design objectives. Despite
data deletions result in increased variation in this, their impact in applied conservation planning

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Review TRENDS in Ecology & Evolution Vol.16 No.5 May 2001 247

has been minimal. The work done so far remains taxonomic groups used in reserve design remains
mostly theoretical, with few exceptions2. Prendergast another problem12,22. Tests of taxonomic and
et al.31 have discussed the gaps between theory and environmental surrogacy for species diversity are
practice in reserve design, and the lack of generally discouraging, although some positive
communication between scientists and managers results have been obtained43. The conclusion so far is
appeared to be the main problem. Managers are not that good biodiversity surrogates are very difficult to
aware of existing computational and analytical tools find.
and scientists remain unaware of many management Although data about the performance of existing
goals and constraints; neither is the optimal set of reserves are accumulating, more effort is needed in
sites selected by an algorithm generally readily monitoring reserves designed with site-selection
available45. The acquisition and management of sites methods. All results from studies11,18,19 assessing the
takes time. To cope with this, and to make decisions long-term performance of reserves designed by site-
about the scheduling of conservation action, the use of selection algorithms come from hypothetical
IRREPLACEABILITY indices45,46 and VULNERABILITY indices situations and not from monitoring of established
has been suggested12. This information can be reserves. These studies have looked at how many
combined with other information (e.g. costs) in a species would have persisted if the reserve network
multicriteria decision analysis, which has recently had been designed using occupancy information at
Acknowledgements been suggested as a way of incorporating analytical some point in the past. Although all studies11,18,19
We are grateful to
M. Araújo and I. Hanski for
tools into a management framework4,12,47. Another concluded that species turnover can be high, the
discussion and comments recent approach is the incorporation of site-selection results concerning the performances of algorithms are
on this review. We also algorithms into decision-support systems to guide still likely to be optimistic. More species might have
appreciate the critical negotiations between groups12. disappeared if the remaining habitat not selected for
comments of B. O’Hara,
H. Possingham and
Analytical reserve design tools are not very helpful the reserve had deteriorated in quality. Such habitat is
R.I. Vane-Wright. without high-quality data sets with which to apply likely to serve as a source of migrants that decreases
Financial support to MC them. Ways of improving data quality include the extinction probabilities in the reserve sites. With this
and AM was provided by
extension of surveys to avoid biases towards in mind, the explicit consideration of persistence and
the Academy of Finland,
research projects #45125 particular taxa or sites28 and the use of statistical spatiotemporal dynamics in reserve design remains a
and #71516, respectively. tools to predict species distributions12,25. How to select major future challenge for the discipline.

References 12 Margules, C.R. and Pressey, R.L. (2000) pp. 251–272, Cambridge University Press
1 Pressey, R.L. et al. (1993) Beyond opportunism: Systematic conservation planning. Nature 405, 22 Pimm, S.L. and Lawton, J.H. (1998) Planning for
key principles for systematic reserve selection. 243–253 biodiversity. Science 279, 2068–2069
Trends Ecol. Evol. 8, 124–128 13 Possingham, H.P. et al. (2000) Mathematical 23 Hanski, I. (1999) Metapopulation Ecology, Oxford
2 Pressey, R.L. et al. (1996) Optimality in reserve methods for reserve system design. In University Press
selection algorithms: when does it matter and Quantitative Methods for Conservation Biology 24 Bedward, M. et al. (1992) A new approach for
how much? Biol. Conserv. 76, 259–267 (Ferson, S. and Burgman, M., eds), pp. 291–306, selecting fully representative reserve networks:
3 Csuti, B. et al. (1997) A comparison of reserve Springer-Verlag addressing efficiency, reserve design and land
selection algorithms using data on terrestrial 14 Pressey, R.L. and Nicholls, A.O. (1989) suitability with an iterative analysis. Biol.
vertebrates in Oregon. Biol. Conserv. 80, 83–97 Application of a numerical algorithm to selection Conserv. 62, 115–125
4 Williams, P.H. (1998) Key sites for conservation: of reserves in semi-arid New South Wales. Biol. 25 Kiester, R. et al. (1996) Conservation
area–selection methods for biodiversity. In Conserv. 50, 263–278 prioritization using gap data. Conserv. Biol. 10,
Conservation in a Changing World (Mace, G.M. 15 Pressey, R.L. (1994) Ad hoc reservations: forward 1332–1342
et al., eds), pp. 211–249, Cambridge University or backward steps in developing representative 26 Williams, P.H. and Araújo, M.B. (2000) Using
Press reserve systems? Conserv. Biol. 8, 662–668 probabilities of persistence to identify important
5 Vane-Wright, R.I. et al. (1991) What to protect? 16 Araújo, M. (1999) Distribution patterns of areas for biodiversity conservation. Proc. R. Soc.
Systematics and the agony of choice. Biol. biodiversity and the design of a representative London B Biol. Sci. 267, 1959–1966
Conserv. 55, 235–254 reserve network in Portugal. Div. Distrib. 5, 27 Winston, M. and Angermeier, P. (1995) Assessing
6 Williams, P.H. Complementarity. In Encyclopedia 151–163 conservation value using centres of population
of Biodiversity (Vol. 1) (Levin, S.A., ed.), Academic 17 Andelman, S. et al. Tools for conservation density. Conserv. Biol. 6, 1518–1527
Press (in press) planning: general principles for reserve network 28 Andelman, S. and Meir, E. Breath is better than
7 Underhill, L.G. (1994) Optimal and suboptimal design in an uncertain world. Bioscience (in press) depth. Biodiversity data requirements for adequate
reserve selection algorithms. Biol. Conserv. 70, 85–87 18 Margules, C.R. et al. (1994) Apparent species reserve networks. Conserv. Biol. (in press)
8 Pressey, R.L. et al. (1999) Effects of data turnover, probability of extinction and the 29 Araújo, M.B. and Williams, P.H. (2000) Selecting
characteristics on the results of reserve selection selection of nature reserves: a case study on the areas for species persistence using occurrence
algorithms. J. Biogeog. 26, 179–191 Ingleborough limestone pavements. Conserv. data. Biol. Conserv. 96, 331–345
9 Arthur, J.F. et al. (1997) Finding all optimal Biol. 8, 398–409 30 Murcia, C. (1995) Edge effects in fragmented
solutions to the reserve site selection problem: 19 Virolainen, K.M. et al. (1999) Selecting networks forest: implications for conservation. Trends Ecol.
formulation and computational analysis. Environ. of nature reserves: methods do affect the long- Evol. 10, 58–62
Ecol. Stat. 4, 153–165 term outcome. Proc. R. Soc. London B Biol. Sci. 31 Prendergast, J.R. et al. (1999) The gaps between
10 Rodrigues, A.S. et al. (1999) The performance of 266, 1141–1146 theory and practice in selecting nature reserves.
existing networks of conservation areas in 20 Hanski, I. (1998) Metapopulation dynamics. Conserv. Biol. 13, 484–492
representing biodiversity. Proc. R. Soc. London B Nature 396, 41–49 32 Nicholls, A.O. and Margules, C.R. (1993) An
Biol. Sci. 266, 1453–1460 21 Nicholls, A.O. (1998) Integrating population upgraded reserve selection algorithm. Biol.
11 Rodrigues, A.S. et al. (2000) Robustness of reserve abundance, dynamics and distribution into Conserv. 64, 165–169
selection procedures under temporal species broad–scale priority setting. In Conservation 33 Lombard, A. et al. (1997) Reserve selection in a
turnover. Proc. R. Soc. London B Biol. Sci. 267, 49–55 in a Changing World (Mace, G.M. et al., eds), species rich and fragmented landscape on the

http://tree.trends.com
248 Review TRENDS in Ecology & Evolution Vol.16 No.5 May 2001

Agulhas Plain, South Africa. Conserv. Biol. 11, passé in the landscape era? Biol. Conserv. 83, 43 Howard, P.C. et al. (1998) Complementarity and
1101–1116 247–257 the use of indicator groups for reserve selection in
34 Burgman, M.A. et al. (1993) Risk Assessment in 39 Andelman, S. and Fagan, W. (2000) Umbrellas Uganda. Nature 394, 472–475
Conservation Biology, Chapman & Hall and Flagships: efficient conservation or expensive 44 Araújo, M.B. et al. (2001) Would environmental
35 Högmander, H. and Møller, J. (1995) Estimating mistakes? Proc. Natl. Acad. Sci. U. S. A. 97, diversity be a good surrogate for species diversity?
distribution maps from atlas data using methods 5954–5959 Ecography 24, 103–110
of statistical image analysis. Biometrics 51, 40 Williams, P.H. et al. (2000) Flagship species, 45 Pressey, R.L. et al. (1994) Shades of
393–404 ecological complementarity, and conserving the irreplaceability: towards a measure of the
36 Polasky, S. et al. (2000) Choosing reserve diversity of mammals and birds in sub-Saharan contribution of sites to a reservation goal. Biodiv.
networks with incomplete species information. Africa. Anim. Conserv. 3, 249–260 Conserv. 3, 242–262
Biol. Conserv. 94, 1–10 41 Sætersdal, M. et al. (1993) How to maximize 46 Ferrier, S. et al. (2000) A new predictor of t
37 Freitag, S. and Van Jaarsveld, A.S. (1998) biological diversity in nature reserve selection: he irreplaceability of areas for achieving
Sensitivity of selection procedures for priority vascular plants and breeding birds in deciduous a conservation goal, its application to
conservation areas to survey extent, survey woodlands, Western Norway. Biol. Conserv. 66, real-world planning, and a research agenda
intensity and taxonomic knowledge. Proc. R. Soc. 131–138 for further refinement. Biol. Conserv. 93, 3
London B Biol. Sci. 265, 1475–1482 42 Van Jaarsveld, A.S. et al. (1998) Biodiversity 03–325
38 Simberloff, D. (1998) Flagships, umbrellas, assessment and conservation strategies. Science 47 Possingham, H.P. and Shea, K. (1999) The
and keystones: is single species management 279, 2106–2108 business of biodiversity. Aust. J. Zool. 31, 3–5

Linking plants to rocks: ectomycorrhizal


fungi mobilize nutrients from minerals
Renske Landeweert, Ellis Hoffland, Roger D. Finlay, Thom W. Kuyper and Nico van Breemen

Plant nutrients, with the exception of nitrogen, are ultimately derived from accelerate weathering of minerals by excreting
weathering of primary minerals. Traditional theories about the role of organic acids, phenolic compounds, protons and
ectomycorrhizal fungi in plant nutrition have emphasized quantitative effects SIDEROPHORES3,4. Such plant-induced mineral
on uptake and transport of dissolved nutrients. Qualitative effects of the weathering must have facilitated the subsequent
symbiosis on the ability of plants to access organic nitrogen and phosphorus spread of land plants by increasing the availability of
sources have also become increasingly apparent. Recent research suggests essential plant nutrients and by producing SECONDARY
that ectomycorrhizal fungi mobilize other essential plant nutrients directly MINERALS, such as clays and iron (Fe) and aluminium
from minerals through excretion of organic acids. This enables ectomycorrhizal (Al) oxides, providing soil material for anchorage and
plants to utilize essential nutrients from insoluble mineral sources and affects water holding. Continuing today, essential plant
nutrient cycling in forest systems. nutrients enter ecosystems through biogeochemical
weathering of primary minerals. To understand soil
Physical and chemical WEATHERING (see Glossary) of ecological processes, knowledge of the potential
Renske Landeweert* the primary rock of the earth results in a release of influence of plant roots and their associated
Thom W. Kuyper dissolved mineral elements and residues into the microbiota on weathering processes is essential.
Sub-dept of Soil Quality,
Wageningen University,
biological environment. The rise of vascular land
Box 8005, NL-6700 EC plants about 400 million years ago (Mya) presumably Organic acids as weathering agents
Wageningen, led to vastly increased mineral weathering1,2. Some of Soluble organic acids affecting mineral weathering in
The Netherlands. the photosynthetic products formed in plant leaves soils originate from various sources. Medium to high
*e-mail:
Renske.landeweert@
end up as organic acids that are exuded by plant roots molecular weight organic acids, such as humic
bb.benp.wag-ur.nl into the surrounding soil. Together with CO2, which is substances, are less effective in promoting mineral
Ellis Hoffland
pumped into the soil via root respiration and dissolution than are low molecular weight (LMW)
Nico van Breemen heterotrophic respiration of soil microorganisms, organic acids produced by plant roots and soil
Laboratory of Soil Science these organic acids greatly enhance the dissolution of microorganisms5. Although constituting only a minor
and Geology,
primary silicate minerals (Box 1), thereby mobilizing fraction of the total organic acids in the soil solution,
Wageningen University,
Box 37, NL-6700 AA essential LITHOPHILIC plant nutrients. Silicate LMW organic acids are generally considered to be the
Wageningen, minerals such as FELDSPARS, MICAS, HORNBLENDE and most important biological weathering agents in soils,
The Netherlands. pyroxene provide calcium (Ca), magnesium (Mg) and owing to their acidifying and complexing capacities5,6.
Roger D. Finlay potassium (K); APATITE is the main PRIMARY MINERAL Depending on the number and configuration of
Dept of Forest Mycology source of phosphorus (P). carboxylic and phenolic groups and the related acid
and Pathology, Swedish
The carbon-rich root exudates also support large strength, organic acids provide H+ for protonation of
University of Agricultural
Sciences, Box 7026, SE- communities of root-associated microorganisms the mineral surface and chelate cations7 (Box 1).
750 07 Uppsala, Sweden. (rhizosphere bacteria and fungi) that further Concentrations of LMW organic acids in the bulk soil

http://tree.trends.com 0169–5347/01/$ – see front matter © 2001 Elsevier Science Ltd. All rights reserved.PII: S0169-5347(01)02124-3

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