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36 Ting, C.T. et al. (1998) A rapidly evolving 44 Akashi, H. et al. (1998) Mutation pressure, natural 53 Charlesworth, D. and Charlesworth, B. (1998)
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Sophisticated computational methods have been developed to help us to problem: given a limit on cost or area, select the
identify sets of nature reserves that maximize the representation of regional combination of sites that maximizes the
diversity, but, until recently, the methods have not dealt explicitly and directly representation of natural features (Box 2).
with the main goal of reserve networks, that of the long-term maintenance of
biodiversity. Furthermore, the successful application of current methods Advances in site-selection algorithms
requires reliable information about species distributions, which is not always Variants of these two problems have been tackled
available. Recent results show that data quality, as well as the choice of with different site-selection algorithms (Box 3). By
surrogates for biodiversity, could be critical for successful reserve design. the early 1980s, several authors1,3,4 independently
Because of these problems and a lack of communication between scientists developed iterative heuristic algorithms that attempt
and managers, the impact of computational site-selection tools in applied to solve the problem of combining sites into
conservation planning has been minimal. representative and efficient networks based on the
concept of COMPLEMENTARITY5,6. Subsequently, authors
Site-selection algorithms are computational methods began using tools from the field of OPERATIONS RESEARCH
Mar Cabeza*
Atte Moilanen that have been developed to identify a set of nature to contribute to the development of reserve design
Dept of Ecology and reserves containing as many species as possible, that algorithms. In the 1990s, discussions about the
Systematics, Division of is, methods maximizing the REPRESENTATION (see optimality properties of site-selection algorithms
Population Biology,
PO Box 17
Glossary) of species diversity1–3. For this purpose, two became a central theme in the literature, which
(Arkadiankatu 7), general representation problems have been concluded that heuristic algorithms do not guarantee
University of Helsinki, formulated. First, the minimum area problem: select an optimal minimum area solution, in contrast to
FIN-00014 Helsinki,
the sites that represent all NATURAL FEATURES a given exact algorithms (such as integer programming
Finland.
*e-mail: number of times with a minimum number of sites, techniques)7 (Box 3). Several studies2,3 have
cabeza@cc.helsinki.fi area or cost (Box 1). Second, the maximum coverage compared the optimality of different site-selection
http://tree.trends.com 0169–5347/01/$ – see front matter © 2001 Elsevier Science Ltd. All rights reserved. PII: S0169-5347(01)02125-5
Review TRENDS in Ecology & Evolution Vol.16 No.5 May 2001 243
Minimize number of sites, total area, or cost, to represent all natural Maximize the representation of natural features
features (e.g. species) given a limit for the number of sites, cost or area
A is an M sites x N natural features matrix whose elements aij are a measure Let S be the set of sites included in the site
of the occurrence of the feature j in site i. Let Ii ∈{0,1} be an indicator variable selection, N is the number of features. The object of
which has value 1 if site i is included in the selection and 0 otherwise. Let optimization is to:
each site have cost ci, and a desired representation level rj.. The
N
optimization problem is: Maximize Eqn 1:
∑ V j (S) [1]
j =1
M
Minimize Eqn 1: ∑ ci Ii [1]
∑ ci
i =1 subject to Eqn 2: [2]
≤R
i ∈S
M
subject to Eqn 2: ∑ aij Ii ≥ rj [2] Vj (S) is the value of feature j in selection S. In the
i =1 simplest form, Vj (S) is 1 if the desired
for all j (each feature is represented at least rj times). representation level for feature j is achieved in
Particular problems of representation can be derived from this general casea: selection S and 0 if it is not. Vj (S) could also be a
(a) Minimize the number of sites needed to represent features: measure of the predicted persistence of species j
ci = 1 all sites are of the same size or cost on selection S. The cost of patch i, ci , can be defined
aij = 0 or 1 if only the presence or absence of the feature is considered as 1 (if only the number of patches counts), as the
rj = 1 gives the basic single representation problem patch area, or as the real patch cost depending on
If rj ≥ 1 we have the multiple representation problem the objectives of optimization. R is the maximum
(b) Minimize the total area needed to represent each feature at a level rj. available resource, counted in the same units as ci.
ci = areai the cost of a site is its area (See Ref. a for detailed formulations.)
aij = area covered by feature j in site i Reference
rj = required representation level in area units a Arthur, J.F. et al. (1997) Finding all optimal solutions to the
(c) Minimize total cost to represent features. reserve site selection problem: formulation and
as (a) but the cost of a site is its precise real cost: ci = costI. computational analysis. Environ. Ecol. Stat. 4, 153–165
Reference
a Pressey, R.L. et al. (1997) Effectiveness of alternative heuristic algorithms for identifying
indicative minimum requirements for conservation reserves. Biol. Conserv. 80, 207–219 times for large problems (hundreds or thousands of
sites or patches), and because they cannot solve
certain complex problem variants, including those
algorithms, giving mixed results. Although iterative with nonlinear object functions2. Nevertheless, an
heuristic algorithms are often suboptimal, the increasing fraction of conservation planning problems
difference to the solution given by an exact algorithm can be solved using exact algorithms9, and there is
depends on the data set2,3. currently less emphasis on optimality, which is no
The first systematic study comparing the solutions longer a problem in many cases. Integer
found by different algorithms in relation to data-set programming is preferred for both theoretical
characteristics, such as rarity or nestedness of exercises and when the size of the data set and the
features, size variation of the selection units and the conservation goal are appropriate9–11, whereas
size of the data set, has only recently been conducted8. iterative heuristics are employed when solutions are
The number of rare features (land types in this study) required in seconds or minutes, and in conservation-
in the data was an important factor in explaining planning projects requiring close interaction with
differences between iterative heuristics and integer decision makers4,12. Advanced heuristics, such as
programming: the larger the number of rare features, stochastic global search methods (Box 3), appear to
the more sites are needed and the closer are their represent a good compromise; these methods can deal
solutions. For instance, a high level of endemism relatively quickly with complex problems and their
forces the initial inclusion of many sites into the solutions are much less suboptimal than are those
reserve network and, consequently, the remaining given by the simplest iterative heuristics13. Also, in
optimization problem becomes computationally recent reserve design literature, increasing attention
simpler (and the results of different algorithms closer has been given to the use of multicriteria methods4,13.
to each other). Size variation among the sites also Following algorithmic improvements and a great
appeared to reduce suboptimality when the goal was increase in hardware speed, topics other than
to minimize the total reserve area rather than the algorithm efficiency and optimality are receiving
number of sites. increased attention in the current reserve design
Although integer programming techniques should literature. These include the critical issue of how to
be preferred for their guaranteed optimality, it has deal with long-term persistence of biodiversity, the
been argued that they are not convenient, because sensitivity of algorithms to data-set quality, the choice
they may require unacceptably long computation of surrogate species for reserve design, and how to
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244 Review TRENDS in Ecology & Evolution Vol.16 No.5 May 2001
establish conservation-scheduling priorities given the truly persisted10,16,17. A few recent studies have
subset of selected sites. demonstrated how efficient reserve networks
(efficient in representing numbers of species relative
Performance of existing reserves to the cost) might not protect the original set of
The performance of existing reserves has often been features for many years, because species go locally
assessed by comparing them to the minimum number extinct and colonize sites regardless of whether the
of sites (or area) needed to represent all diversity site is included in the reserve network. Table 1
(efficiency sensu Pressey and Nicholls14), even though summarizes results from three studies that
minimal site number might not have been the original analysed how well different reserve design
goal of the reserve design. In practice, reserves have strategies would have maintained diversity over
frequently been selected in an ad hoc manner12,15, time. The first two studies18,19 evaluated the
without the use of explicit criteria. This explains the minimum area strategy in its ability to maintain
observation that fewer sites are needed to represent all diversity. Both concluded that species turnover was
diversity if the selection assumes no existing reserves high, and that a large fraction of species could be lost
rather than beginning by including existing reserves15. even in a short time (Table 1). The third example11
Although efficiency can be used as a measure of analysed the long-term performance of several
the performance of an algorithm searching for the design strategies using the Common Birds Census
minimum set (to compare solutions given by different data set in Britain. This is the first study that
algorithms for the same data set), the success of a suggests ways of accounting for species turnover,
reserve network depends on the initial conservation and it concludes that fewer species are lost if sites
objectives and, hence, success can and should be are selected according to population density or local
measured in different ways. For example, Araújo16 abundance. The density strategy might avoid
and Rodrigues et al.10 have measured the success of selecting large sites with large populations, and
existing reserves by considering the gap between favour smaller sites with denser populations, and it
current and complete representation, concluding might, therefore, be a relatively efficient approach
that, although the existing protected areas do not (Table 1). However, more studies are needed to
sample all species, they do provide a better result establish whether focusing on good-quality (densely
than does choosing areas at random populated) but possibly small sites would be a good
The assessment of the success of a reserve in general strategy for reserve design. METAPOPULATION
terms of persistence requires monitoring over time THEORY suggests that many sites are needed for
to establish whether the conservation targets have species living as metapopulations in networks of
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Review TRENDS in Ecology & Evolution Vol.16 No.5 May 2001 245
Table 1. Studies demonstrating how species tend to be lost from reserves in minimum set designsa
For a combination of boreal lakes, find the Maximum number of plants 18.0 5 sites 19
minimum area that covers: Maximum restricted range diversity 18.0 5 sites
(63 yr; 32 spp.; 25 sites)
Minimize reserve network area to selectd All species at least once Min. Max. Mean Min. Max. Mean 11
(10 yr; 47 spp.; 56 sites) All species at least at the site where 4.0 12.0 8.0 400 750 556.25 (ha)
they are most abundant 0.0 4.0 2.7 1500 2250 1831.25 (ha)
All species at least at the site where 0.0 5.0 3.2 1000 1800 1312.50 (ha)
they have the highest density
aStudies analyzing the proportion of species that would have been successfully protected if the selection of the reserve had been done with the occupancy information at
dResults show minimum, maximum and mean data from eight analyses of data sets sampled ten years apart from a temporal data set of 20 years.
small patches, because the local extinction rates until the required level of persistence probability for
would inevitably be high20. each species is reached. The difficult part here is how
to obtain the probabilities of persistence. Araújo and
Persistence of biodiversity in reserve networks Williams29 used niche-based regression models to
Researchers now agree that biodiversity persistence estimate the local probabilities of occurrence of
should be considered in reserve-network species, which were then transformed into
design4,12,13,17,21–23. So far, only a few studies have probabilities of persistence with information on
actually done this. Some have focused only on local threat and susceptibility of species to the threats.
(within site) persistence11,21,24,25, whereas others have
looked at regional (within reserve network) Spatial reserve design
persistence2,18,26. Spatial population dynamics, Economic considerations might require compact
however, has yet to be treated explicitly in site- reserves because the cost of management often scales
selection literature. Nevertheless, the general idea of more closely with the length of reserve boundary than
keeping sites close together has been influential in with its area13. Moreover, a compact reserve increases
spatial reserve design. local persistence by reducing edge effects30 and, at the
same time, having individual sites close together
Local and regional persistence facilitates dispersal and recolonization of empty
Several approaches to deal with local persistence habitats, which increases the probability of regional
have been suggested: persistence20,31. A few studies have considered the
(1) Only selecting sites larger than a threshold size clustering of sites by
when there is a known size limit for the presence of • Including a rule that chooses sites close together
species (e.g. the Schonewald-Cox index gives an when breaking ties in iterative algorithms32,33.
indication of the minimum area necessary for finding • Minimizing a linear combination of reserve
particular mammal species)25. network area and boundary length13.
(2) Basing site selection on abundance, either by Tight clustering of sites might not always be the
prioritizing sites with the largest populations11, or by best way to increase persistence when REGIONAL
using population density as an indicator of site STOCHASTICITY is strong. Diseases, weather
quality11,21,27. catastrophes and forest fires, etc. can increase the
(3) Running population viability analysis for each risk of simultaneous extinction of sites that are
species24. As far as we know, this approach has not located very close to each other34. One ad hoc solution
been used in a multispecies site-selection exercise, is to require multiple representations at sites
undoubtedly owing to the huge amount of high- separated by a minimum distance while maximizing
quality data that it requires. reserve compactness13.
If the focus of reserve design is on the regional Despite these approaches to promoting
persistence (i.e. maintain each species within the persistence, site-selection methods are essentially
reserve network, even if local extinctions occur), a based on static criteria, because they mostly use
preferred approach (assuming that the cost allows it) information based on a single snapshot of species
is to include multiple representations of each natural distributions. Spatiotemporal dynamics are not
feature within the set of sites2,18,28. Another recent explicitly taken into account, even when species
study26 proposed a method that combines distributions are known to change over time. Given
probabilities of local persistence among sites directly, that many communities show high turnover18, the
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246 Review TRENDS in Ecology & Evolution Vol.16 No.5 May 2001
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Review TRENDS in Ecology & Evolution Vol.16 No.5 May 2001 247
has been minimal. The work done so far remains taxonomic groups used in reserve design remains
mostly theoretical, with few exceptions2. Prendergast another problem12,22. Tests of taxonomic and
et al.31 have discussed the gaps between theory and environmental surrogacy for species diversity are
practice in reserve design, and the lack of generally discouraging, although some positive
communication between scientists and managers results have been obtained43. The conclusion so far is
appeared to be the main problem. Managers are not that good biodiversity surrogates are very difficult to
aware of existing computational and analytical tools find.
and scientists remain unaware of many management Although data about the performance of existing
goals and constraints; neither is the optimal set of reserves are accumulating, more effort is needed in
sites selected by an algorithm generally readily monitoring reserves designed with site-selection
available45. The acquisition and management of sites methods. All results from studies11,18,19 assessing the
takes time. To cope with this, and to make decisions long-term performance of reserves designed by site-
about the scheduling of conservation action, the use of selection algorithms come from hypothetical
IRREPLACEABILITY indices45,46 and VULNERABILITY indices situations and not from monitoring of established
has been suggested12. This information can be reserves. These studies have looked at how many
combined with other information (e.g. costs) in a species would have persisted if the reserve network
multicriteria decision analysis, which has recently had been designed using occupancy information at
Acknowledgements been suggested as a way of incorporating analytical some point in the past. Although all studies11,18,19
We are grateful to
M. Araújo and I. Hanski for
tools into a management framework4,12,47. Another concluded that species turnover can be high, the
discussion and comments recent approach is the incorporation of site-selection results concerning the performances of algorithms are
on this review. We also algorithms into decision-support systems to guide still likely to be optimistic. More species might have
appreciate the critical negotiations between groups12. disappeared if the remaining habitat not selected for
comments of B. O’Hara,
H. Possingham and
Analytical reserve design tools are not very helpful the reserve had deteriorated in quality. Such habitat is
R.I. Vane-Wright. without high-quality data sets with which to apply likely to serve as a source of migrants that decreases
Financial support to MC them. Ways of improving data quality include the extinction probabilities in the reserve sites. With this
and AM was provided by
extension of surveys to avoid biases towards in mind, the explicit consideration of persistence and
the Academy of Finland,
research projects #45125 particular taxa or sites28 and the use of statistical spatiotemporal dynamics in reserve design remains a
and #71516, respectively. tools to predict species distributions12,25. How to select major future challenge for the discipline.
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Plant nutrients, with the exception of nitrogen, are ultimately derived from accelerate weathering of minerals by excreting
weathering of primary minerals. Traditional theories about the role of organic acids, phenolic compounds, protons and
ectomycorrhizal fungi in plant nutrition have emphasized quantitative effects SIDEROPHORES3,4. Such plant-induced mineral
on uptake and transport of dissolved nutrients. Qualitative effects of the weathering must have facilitated the subsequent
symbiosis on the ability of plants to access organic nitrogen and phosphorus spread of land plants by increasing the availability of
sources have also become increasingly apparent. Recent research suggests essential plant nutrients and by producing SECONDARY
that ectomycorrhizal fungi mobilize other essential plant nutrients directly MINERALS, such as clays and iron (Fe) and aluminium
from minerals through excretion of organic acids. This enables ectomycorrhizal (Al) oxides, providing soil material for anchorage and
plants to utilize essential nutrients from insoluble mineral sources and affects water holding. Continuing today, essential plant
nutrient cycling in forest systems. nutrients enter ecosystems through biogeochemical
weathering of primary minerals. To understand soil
Physical and chemical WEATHERING (see Glossary) of ecological processes, knowledge of the potential
Renske Landeweert* the primary rock of the earth results in a release of influence of plant roots and their associated
Thom W. Kuyper dissolved mineral elements and residues into the microbiota on weathering processes is essential.
Sub-dept of Soil Quality,
Wageningen University,
biological environment. The rise of vascular land
Box 8005, NL-6700 EC plants about 400 million years ago (Mya) presumably Organic acids as weathering agents
Wageningen, led to vastly increased mineral weathering1,2. Some of Soluble organic acids affecting mineral weathering in
The Netherlands. the photosynthetic products formed in plant leaves soils originate from various sources. Medium to high
*e-mail:
Renske.landeweert@
end up as organic acids that are exuded by plant roots molecular weight organic acids, such as humic
bb.benp.wag-ur.nl into the surrounding soil. Together with CO2, which is substances, are less effective in promoting mineral
Ellis Hoffland
pumped into the soil via root respiration and dissolution than are low molecular weight (LMW)
Nico van Breemen heterotrophic respiration of soil microorganisms, organic acids produced by plant roots and soil
Laboratory of Soil Science these organic acids greatly enhance the dissolution of microorganisms5. Although constituting only a minor
and Geology,
primary silicate minerals (Box 1), thereby mobilizing fraction of the total organic acids in the soil solution,
Wageningen University,
Box 37, NL-6700 AA essential LITHOPHILIC plant nutrients. Silicate LMW organic acids are generally considered to be the
Wageningen, minerals such as FELDSPARS, MICAS, HORNBLENDE and most important biological weathering agents in soils,
The Netherlands. pyroxene provide calcium (Ca), magnesium (Mg) and owing to their acidifying and complexing capacities5,6.
Roger D. Finlay potassium (K); APATITE is the main PRIMARY MINERAL Depending on the number and configuration of
Dept of Forest Mycology source of phosphorus (P). carboxylic and phenolic groups and the related acid
and Pathology, Swedish
The carbon-rich root exudates also support large strength, organic acids provide H+ for protonation of
University of Agricultural
Sciences, Box 7026, SE- communities of root-associated microorganisms the mineral surface and chelate cations7 (Box 1).
750 07 Uppsala, Sweden. (rhizosphere bacteria and fungi) that further Concentrations of LMW organic acids in the bulk soil
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