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Oral Oncology 67 (2017) 103–108

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Oral Oncology
journal homepage: www.elsevier.com/locate/oraloncology

Sensitivity of tumor surface brushings to detect human papilloma virus


DNA in head and neck cancer
Barbara Kofler a,⇑, Wegene Borena b, Claudia Manzl c, Jozsef Dudas a, Anne-Sophie Wegscheider c,
Pidder Jansen-Dürr d, Volker Schartinger a, Herbert Riechelmann a
a
Department of Otorhinolaryngology, Medical University of Innsbruck, Anichstrasse 35, 6020 Innsbruck, Austria
b
Division of Virology, Department of Hygiene, Microbiology, Social Medicine, Medical University of Innsbruck, Peter-Mayr-Strasse 4b, 6020 Innsbruck, Austria
c
Department of Pathology, Medical University of Innsbruck, Müllerstrasse 44, 6020 Innsbruck, Austria
d
Institute for Biomedical Ageing Research, Medical University of Innsbruck, Rennweg 10, 6020 Innsbruck, Austria

a r t i c l e i n f o a b s t r a c t

Article history: Objective: Human papilloma virus (HPV) induced head and neck squamous cell carcinoma (HNSCC) rep-
Received 7 November 2016 resents a distinct tumor subset. We questioned how accurately a brushing from the tumor surface detects
Received in revised form 31 January 2017 HPV in patients with HNSCC.
Accepted 13 February 2017
Materials and methods: Brushings from the tumor surface were compared with HPV DNA isolation from
Available online 23 February 2017
formalin-fixed and paraffin-embedded (FFPE) tumor biopsies, which served as the reference standard. In
both matrices, HPV DNA was detected using a commercially available test kit. In addition, p16 was
Keywords:
assessed in tumor biopsies by immunohistochemistry (IHC). The tumors were considered p16 positive
Brush test
Head and neck cancer
if 70% or more of cancer cells expressed p16.
p16 Results: 93 patients with HNSCC were included. Sensitivity and specificity of the brush test were 83% (95%
Human papillomavirus CI: 67–92%) and 85% (95%CI: 72–93%). Results of p16 IHC were concordant with FFPE samples DNA deter-
minations in 73/93 patients. In 53 patients (57%) the tumor was located in the oropharynx and in 40
patients (43%) the tumor was located in the non-oropharynx region. Sensitivity and specificity of the brush
test in patients with oropharyngeal cancer was higher with 86% (95%CI: 70–95%) and 89% (95%CI: 65–99%).
Conclusion: Superficial brushes from the tumor surface may be used to identify HPV positive HNSCC.
Ó 2017 Elsevier Ltd. All rights reserved.

Introduction the host genome by integration or in a non-integrated episomal


state. Integration of the viral genome of high risk (HR) HPV usually
About 85% of adults will have a human papilloma virus (HPV) leads to unregulated transcription of the E6 and E7 oncoproteins
infection in their life, but not all infections transform in a carci- [6]. The molecular biology of HPV induced oncogenesis is based
noma, which develops from a persistent HPV induced lesion. In on these two viral oncoproteins, which inhibit key tumor suppres-
most cases the infection is transient and eliminated by the immune sors. The viral oncoprotein E6 induces degradation of p53 and E7
system [1]. HPV driven and HPV independent cancer of the head inactivates the retinoblastoma protein (pRb). The inactivation of
and neck have a different demographic, clinical, molecular and pRb through E7 leads to an upregulation of functionally inactive
genomic entity [2]. The prevalence of this cancer has particularly p16, normally a tumor suppressor protein [7].
increased in North America and Europe. Men younger than The mainstay of HPV diagnostic is the detection of viral nucleic
60 years are frequently affected [3]. In 2002, zur Hausen reported acid in biopsy specimens [8]. Hybrid Capture IIÒ – a DNA detection
that HPV infects epidermal or mucosal epithelial cells that are able method via signal amplification – has been used as a reference
to proliferate [4]. In head and neck squamous cell carcinoma method for HPV diagnosis [9]. However, in the last few years, a
(HNSCC) HPV infection has a specific tropism to tonsillar epithe- number of PCR based molecular tests coupled with genotype speci-
lium located in the oropharynx. This is probably due to physiolog- fic hybridization have been introduced [10]. In cervical cancer it
ically exposed reticulated epithelial cells in tonsillar crypts, which seems that the detection of HPV DNA alone cannot distinguish
are susceptible to HPV infection [5]. Virus DNA can interact with between a transient infection and oncogenic viral persistence [6].
Adding additional biomarkers such as p16 immunohistochemistry
⇑ Corresponding author. (IHC) may help to differentiate inactive, non-oncogenic episomal
E-mail address: ba.kofler@tirol-kliniken.at (B. Kofler).
HPV DNA from oncogenic integrated DNA [11]. HPV DNA combined

http://dx.doi.org/10.1016/j.oraloncology.2017.02.013
1368-8375/Ó 2017 Elsevier Ltd. All rights reserved.

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104 B. Kofler et al. / Oral Oncology 67 (2017) 103–108

with p16 is therefore a frequently used marker to detect oncon- slides and macro-dissected for DNA isolation. Genomic DNA was
genic active HPV infection in oropharyngeal squamous cell carci- extracted using EZ1 DNA easy kit (Qiagen, Hilden, Germany) as rec-
noma (OPSCC) [12]. ommended by the manufacturer [18]. Briefly, up to three 5 mm
Broglie and coauthors collected liquid-based brush cytology tissue-slices per specimen were used. Samples were lysed at
specimens prospectively during panendoscopy in 51 patients diag- 75 °C for 5 min, followed by a digestion step using proteinase K
nosed with OPSCC. From the cell suspension, PCR based HPV DNA solution (600 mAU/ml) at 56 °C overnight. After a centrifugation
testing and p16 IHC were performed. The accuracy, sensitivity, step, samples were subsequently processed on the EZ1 workstation
specificity, positive predictive value, and negative predictive value (Qiagen, Hilden, Germany) as recommended. Quality and
of brush cytology to identify HR HPV DNA positive and p16 positive concentration of isolated DNA was evaluated by photometric anal-
OPSCC samples were 88%, 83%, 94%, 95%, and 81%, respectively. The ysis and specimens were stored at 4 °C until used for HPV
authors concluded liquid-based brush cytology specimens from evaluation.
oropharyngeal lesions to be a reliable method to identify patients
with HR HPV OPSCC [13].
Dang and coauthors used oral rinses for HPV detection in 76 Processing of brush specimens
patients with OPSCC, 24 patients with non-OPSCC and 110 healthy
persons. In patients with OPSCC and with non-OPSCC HPV was Nucleic acid extraction was performed within two days of arri-
more likely to be detected than in the healthy control [14]. HPV val of the samples to the laboratory. DNA extraction was per-
oral rinse has also been used as a diagnostic method in a large formed in a fully automated manner (NucliSensÒ easyMAGÒ,
cross-sectional prospective cohort based study on the oral rinse Biomerieux) [19,20]. A total of 500 ml of the sample was pipetted
protocol [15] that has been administered in other studies [16,17]. into a disposable well. After an initial step of cell lysis, the nucleic
In this study we examined surface swabs (brush test) from clin- acid component was isolated from the mixture using magnet silica
ically suspected upper aerodigestive tract malignancies. We ques- particles resulting in a total of 110 ml purified DNA extract. Approx-
tioned how PCR based detection of HPV viral genome in the brush imately 5-10 ml of this extract was used for HPV DNA detection and
test compares with PCR of formalin-fixed and paraffin-embedded genotyping.
(FFPE) biopsies from the same lesion. PCR of FFPE biopsies served
as the reference method. Sensitivity and specificity of HPV detec-
tion from the brush test should be estimated. DNA-Amplification and HPV-Genotyping

Real-time PCR was used for the detection of HPV DNA based on
Methods
the amplification of the L1 open reading frames (ORF). A PCR for
the house keeping gene beta globin was performed parallel as
In- and exclusion criteria
internal control for the availability of cellular material. HPV DNA
was considered positive if the fluorescence signal appeared before
Patients with clinical suspicion of incident HNSCC treated at the
the fortieth cycle [8]. In a second step, all HPV positive samples
Department of Otorhinolaryngology – Head & Neck Surgery, Medi-
were further genotyped after an amplification step using reverse
cal University of Innsbruck were prospectively included between
line blot hybridization on nitrocellulose membrane strips contain-
June 2014 and January 2016. Patients were selected aiming to
ing genotype specific probes (AmpliQuality HPV-TYPE EXPRESS, AB
obtain a 2:1 ratio of oropharyngeal tumors and tumors from other
AnaliticaÒ, Padova, Italy) [21]. This genotyping kit is able to iden-
sites. Patients were excluded if the histopathological examination
tify 40 different HPV types namely, 6, 11, 16, 18, 26, 31, 33, 35,
revealed no HNSCC. The study was approved by the ethics commit-
39, 40, 42, 43, 44, 45, 51, 52, 53, 54, 55, 56, 58, 59, 61, 62, 64, 66,
tee of the Medical University of Innsbruck (AN2014-0181 338/4.10).
67, 68a/b, 69, 70, 71, 72, 73, 81, 82, 83, 84, 87, 89, and 90 (AB Ana-
liticaÒ, Padova, Italy). Contamination due to carry-over was mini-
Specimen harvest and handling mized by using dUTP/UNG system which degrades non-specific
residual RNAs. The detection limit of the test kit is 1000 viral copies
All patients underwent routine examination under anesthesia per ml at least for HPV 16 and HPV 6, which is in accordance with
and panendoscopy (EUAP) during diagnostic workup. Panen- the required detection limit by WHO and international HPV refer-
doscopy included tracheobronchoscopy, esophagoscopy and laryn- ence center [22]. Based on International Agency for Research on
gopharyngoscopy. Using a cytology brush (digeneÒ HC2 DNA Cancer classification, the HPV genotypes were classified as follows
Collection Device, Qiagen, Hilden, Germany), the surface of the [23,24]: established high risk: 16, 18, 31, 33, 35, 39, 45, 51, 52, 56,
tumor lesion was vigorously brushed several times. The brushes 58, 59, probably high risk: 26, 53, 66, 68, 73, 82, established low
were then kept in a sterile container in 0.05% sodium azide and risk: 6, 11, 40, 42, 43, 44, 54, 61, 70, 72, 81.
sent to the Division of Virology, Medical University Innsbruck.
Then tumor biopsies were obtained, fixed in formalin and sent to
the Department of Pathology, Medical University Innsbruck, for Immunohistochemistry
routine histopathological examination and DNA extraction for
HPV examination. An additional tumor biopsy was kept in cell cul- Five-micrometer thin paraffin sections were dewaxed and anti-
ture medium and immediately sent to the Laboratory for Molecular gens were retrieved in an automated staining system (Ventana,
Biology and Oncology, Department of Otorhinolaryngology–Head Discovery, Tucson, AZ, USA). Commercial diagnostic assays were
& Neck Surgery for p16 immunohistochemistry. used for p16 detection (CINtecÒ Histology V-Kit, Roche diagnostics,
Basel, Switzerland). Staining was completed using universal sec-
DNA isolation from formalin-fixed and paraffin-embedded (FFPE) ondary antibody solution, hematoxilin counterstaining and the
samples DAB MAP Kit (all Ventana products). Tumor cell areas were evalu-
ated by one experienced observer. Specimens were judged p16
Tumor tissue was fixed in 4% formalin in PBS, paraffin embed- positive if 70% of the cells in tumor areas revealed immunohis-
ded and examined by an experienced pathologist. Areas containing tochmical reaction products. Staining of fibroblastic stroma cells
the highest amount of tumor cells were marked on H&E stained was not counted.

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B. Kofler et al. / Oral Oncology 67 (2017) 103–108 105

Data analysis was 0.67 (95% CI 0.52 to 0.81). Sensitivity of the brush test was
83% (95%CI: 67–92%) and specificity was 85% (95%CI: 72–93%).
The frequencies of high risk HPV DNA detection in samples
obtained by brush cytology from HNSCC tumor surfaces and of High risk HPV detection and p16 immunohistochemistry
high risk HPV DNA detection from FFPE biopsy specimens were
compared. High risk HPV DNA detection from FFPE samples served Of the 93 examined patients with HNSCC, 42 were p16 IHC pos-
as the reference method. For both methods, a binary outcome vari- itive and 51 were p16 IHC negative. Comparing the results of p16
able (positive/negative) was obtained. Standard diagnostic accu- immunoreactivity with the results of FFPE specimens as reference,
racy measures were calculated [25]. Cohen’s kappa was used as a 20/93 results were discordant (Table 3). In detail, 9/40 HPV posi-
measure of concordance and 95% confidence intervals were esti- tive FFPE specimens were p16 IHC negative and 11/53 HPV nega-
mated by bootstrapping. Moreover, the outcomes of HPV DNA tive FFPE specimens were p16 IHC positive. Cohen’s kappa was
assessments were correlated with the binary outcome of p16 0.57 (95% CI = 0.40–0.72), sensitivity was 78% (95% CI = 62–89%)
assessment of biopsy specimens and were analyzed using the same and specificity was 79% (95% CI = 66–89%).
methods. SPSS Statistics 22 software (IBM Corporation, Armonk The 3 diagnostic methods, FFPE biopsies, brush test and p16 IHC
NY) was used for data analysis. yielded concordant results in 67/93 patients. In 30 patients, all 3
diagnostic methods were HPV positive and in 37, all were HPV neg-
ative. In 8 patients, only p16 IHC was positive. In 6 patients, HPV
Results DNA was positive in FFPE specimens while the results of the brush
test and p16 IHC were both negative and in 5 patients only the
Study population result of the brush test was HPV positive.

During the study period, 93 patients with HNSCC were


HPV-Genotyping
included. Of these, 67 patients were male, 86 patients were first
diagnosed with HNSCC and 5 patients had a second primary cancer
The most common Genotype was HPV 16, which was found in
in the head and neck region. The cancer was located at following
37 patients. HPV 16 was positive in 28 patients in both diagnostic
sites: oropharynx 53 patients, oral cavity 17 patients, larynx 17
methods (brush test and HPV DNA from FFPE specimens) and in 9
patients and hypopharynx 6 patients. According to the 7th edition
patients in a single diagnostic method (7 patients in HPV DNA from
of the UICC staging system 22 patients had stage 1 disease, 8
FFPE specimens/2 patients in brush test). The second most found
patients stage 2 disease, 8 patients stage 3 disease, 44 patients
high risk virus was HPV 35, which was detected in 4 patients (3
stage 4a, 7 patients UICC stage 4b and 4 patients UICC stage 4c dis-
patients in both diagnostic methods/1 patient in HPV DNA from
ease. Patient demographic and disease data are detailed in Table 1.
FFPE specimens). Furthermore, HPV 6 was positive in 3 patients
in one diagnostic method (HPV DNA from FFPE specimens) and
Detection of HPV DNA from brush test and FFPE biopsies HPV 18 was positive in 2 brush tests. HPV 58 was found in 2
patients, in 1 patient in both diagnostic methods and 1 patient in
HPV DNA detection from FFPE biopsies served as the reference a single diagnostic method (HPV DNA from FFPE specimens).
method. In all FFPE specimens sufficient DNA could be extracted. HPV 40, HPV 51, HPV 54, HPV 56, HPV 61, HPV 62, HPV 66, HPV
FFPE biopsies were HPV positive in 40 patients and negative in 70, HPV 73 and HPV 90 were positive in 1 patient each diagnosed
53 patients. Also, all brush tests contained sufficient DNA. Brush by the brush test (Table 4).
tests were HPV DNA positive in 41 patients and HPV DNA negative
in 52 patients (Table 2). Cohen’s kappa measure of concordance Oropharyngeal squamous cell carcinoma

32 of 53 patients with OPSCC were p16 IHC positive, which are


Table 1
60% of this patient collective. Furthermore 28 patients of the p16
Study population.

Gender Table 2
Male 67 Brush test compared with the reference method. Crosstabulation of HPV determina-
Female 26 tions in brushing obtained from the tumor surface (brush test) and DNA isolation
from formalin fixed and paraffin-embedded samples (FFPE). Taking FFPE samples as
Age during initial diagnosis the reference method, the sensitivity of the brush test was 83% and the specificity was
50 9 85%.
51–60 34
61–70 34 Brush test FFPE samples
71–80 12
Negative Positive Total
>80 4
Negative 45 7 52
Location of tumor
Positive 8 33 41
Oropharynx 53
Total 53 40 93
Oral cavity 17
Larynx 17
Hypopharynx 6 Table 3
UICC stage P16 IHC compared with the reference method. Crosstabulation of p16 immunohis-
UICC 1 22 tochemistry (IHC) determinations in tumor samples and DNA isolation from formalin
UICC 2 8 fixed and paraffin-embedded samples (FFPE). Taking FFPE samples as the reference
UICC 3 8 method, the sensitivity of p16 IHC was 78% and the specificity was 79%.
UICC 4a 44
P16 IHC FFPE samples
UICC 4b 7
UICC 4c 4 Negative Positive Total
p16 Negative 42 9 51
Negative (70%) 51 Positive 11 31 42
Positive (70%) 42 Total 53 40 93

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106 B. Kofler et al. / Oral Oncology 67 (2017) 103–108

Table 4 ity and specificity for the brush test in this patient collective was
HPV Genotypes in the brush test and FFPE samples. Crosstabulation of HPV Genotypes 86% (95%CI: 70–95%) and 89% (95%CI: 65–99%).
classified in high risk, probably high risk and low risk and the number of HPV
detection of the different HPV genotypes in HPV brushing from the tumor surface
(brush test) and DNA isolation from formalin fixed and paraffin-embedded samples
(FFPE), as well as only in the brush test and only in FFPE samples. Non-oropharyngeal squamous cell carcinoma
HPV genotypes + in brush + only + only
test and in brush in FFPE In the non-OPSCC group 10 of 40 patients were p16 IHC posi-
FFPE samples test samples tive, which are 25% of this patient collective. HPV DNA in the
High risk: HPV 16, 18, 35, 51, 56, 58 32 4 8 p16 IHC positive non-OPSCC group was found in 5 patients in the
Probably high risk: HPV 66, 73 2 brush test and in 3 patients in FFPE biopsies (Table 6).
Low risk: HPV 6, 11, 40, 54, 61, 70 4 4

Discussion
Table 5
Results of diagnostic methods on patients with OPSCC. Crosstabulation of p16 In this study we questioned if HPV DNA detection from the
immunohistochemistry (IHC) determinations in tumor samples, DNA isolation from brush test obtained from tumor surface in patients with HNSCC
formalin fixed and paraffin-embedded samples (FFPE) and the brush test in patients
yields reasonable results. For HPV DNA detection and genotyping
with oropharyngeal squamous cell carcinoma (OPSCC).
from the brush test, commercially available test kits for real time
P16 IHC FFPE samples Brush test PCR and reverse line blot hybridization were used [26]. The detec-
Negative Positive Negative Positive tion limit of the test kits is below 1000 viral copies per ml. HPV
Negative 14 7 17 4 DNA detection in DNA obtained from formalin-fixed and
Positive 4 28 4 28 paraffin-embedded (FFPE) diagnostic biopsies using the same test
Total 18 35 21 32 kits was used as the reference method. Therefore, this study com-
pares different sampling and DNA extraction methods using iden-
tical detection methods.
FFPE biopsies were high risk HPV positive in 40/93 patients. In
detail, biopsies from the oropharynx were high risk HPV positive in
35/53 patients and biopsies from non-oropharyngeal sites in 5/40
patients (p < 0.001). The brush test from tumor surfaces had a sen-
sitivity of 83% (95%CI: 67–92%) and specificity of 85% (95%CI: 72–
93%) when compared with FFPE specimens derived viral DNA
determination. In patients with OPSCC the brush test could reach
even a higher sensitivity and specificity with 86% (95%CI: 70–
95%) and 89% (95%CI: 65–99%).The brush test may thus serve for
preliminary categorization of HNSCC.
In addition to HPV detection from FFPE specimens and brush
test determinations, p16 IHC was obtained in all patients, 42 were
p16 IHC positive and 51 were p16 IHC negative. In a number of
patients, the 3 diagnostic techniques yielded inconsistent results,
compared with the reference method, 20/93 results were discor-
dant. For 8 patients, of which 3 patients with oropharyngeal can-
cer, 3 patients with oral cancer and 2 patients with laryngeal
Fig. 1. Concordant results of the HPV DNA positive brush test in patients with cancer, p16 IHC was the only positive test result. HPV independent
oropharyngeal squamous cell carcinoma (OPSCC). Venn diagram of HPV positive
p16 overexpression in HNSCC may be due to inactivation of pRb as
results on patients with OPSCC. In the brush test 32 patients are HPV DNA positive,
35 patients are HPV DNA positive in FFPE specimens and 32 patients are p16 IHC a result of gene deletions, point mutations, functional mutations,
positive. The HPV DNA positive brush test reaches 30 concordant results with the or other mechanisms of pRb pathway deregulation [27]. It has been
HPV detection from FFPE specimens and 28 concordant results with the p16 IHC. All reported that the loss of pRb function enables the bypass of p16
3 diagnostic methods obtain 27 concordant results of HPV positivity. mediated cell cycle inhibition and loss of pRb generates an onco-
genic stress that could lead to the activation of p16 expression
Table 6 [28]. Irrespective of the mechanism, presumably any tumor har-
Results of diagnostic methods on patients with non-OPSCC. Crosstabulation of p16 boring high levels of p16 has inactivated pRb in order to facilitate
immunohistochemistry (IHC) determinations in tumor samples, DNA isolation from
tumorigenic proliferation [29]. It is controversially discussed if p16
formalin fixed and paraffin-embedded samples (FFPE) and the brush test in patients
with non-oropharyngeal squamous cell carcinoma (non-OPSCC). is a prognostic indicator on its own [30].
P16 IHC was negative in 14 patients with positive HPV DNA in
P16 IHC FFPE samples Brush test
FFPE specimens or in brush test. In these tumors, episomal, tran-
Negative Positive Negative Positive scriptionally inactive HPV DNA may have been detected by PCR,
Negative 28 2 26 4 but had not resulted in p16 overexpression [31]. In the 6 and 5
Positive 7 3 5 5 samples, which were only HPV positive in FFPE specimens or in
Total 35 5 31 9
the brush test, a contamination or erroneous amplification cannot
be excluded [32],[33]. We assume that some of the 6 FFPE samples
were p16 IHC negative due to episomal HPV localization and the
IHC positive OPSCC group are positive for HPV DNA detection from brush test was negative, because the number of viral copies
the brush test and also 28 of these patients are HPV DNA positive obtained by brushing was too low [32],[34]. Low virus copy num-
in FFPE biopsies (Table 5). The brush test could reach concordant bers in brushings may be due to a low number of brushed cells, tis-
results with the reference method in 30/35 HPV DNA positive FFPE sue necrosis at the tumor surface or by the heterogeneous
specimens and in 28/32 p16 IHC positive patients (Fig. 1). Sensitiv- distribution of the virus with in a tumor tissue [35].

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B. Kofler et al. / Oral Oncology 67 (2017) 103–108 107

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Conflict of interest statement
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