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OPINION Typhoid and paratyphoid fever: a call to action
Malick M. Gibani, Carl Britto, and Andrew J. Pollard
Purpose of review
Enteric fever remains a major global-health concern, estimated to be responsible for between 11.9 and
26.9 million cases annually. Long-term prevention of enteric fever will require improved access to safe
drinking water combined with investment in sanitation and hygiene interventions. In the short-to-medium
term, new control strategies for typhoid fever have arrived in the form of typhoid Vi-conjugate vaccines
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(TCVs), offering hope that disease control can be achieved in the near future.
Recent findings
The diagnosis of enteric fever is complicated by its nonspecific clinical presentation, coupled with the low
sensitivity of commonly used diagnostics. Investment in diagnostics has the potential to improve
management, to refine estimates of disease burden and to facilitate vaccine impact studies. A new
generation of reliable, diagnostic tests is needed that are simultaneously accessible, cost-effective, sensitive,
and specific. The emergence and global dissemination of multidrug-resistant, fluoroquinolone-resistant, and
extensively drug-resistant (XDR) strains of Salmonella Typhi emphasizes the importance of continued
surveillance and appropriate antibiotic stewardship, integrated into a global strategy to address
antimicrobial resistance (AMR). Current empirical treatment guidelines are out of date and should be
updated to respond to local trends in AMR, so as to guide treatment choices in the absence of robust
diagnostics and laboratory facilities. In September 2017, the WHO Strategic Advisory Group of Experts
(SAGE) immunization recommended the programmatic use of TCVs in high burden countries. Ongoing and
future studies should aim to study the impact of these vaccines in a diverse range of setting and to support
the deployment of TCVs in high-burden countries.
Summary
The advent of new generation TCVs offers us a practical and affordable public-health tool that – for the first
time – can be integrated into routine childhood immunization programmes. In this review, we advocate for
the deployment of TCVs in line with WHO recommendations, to improve child health and limit the spread
of antibiotic-resistant S. Typhi.
Keywords
antimicrobial resistance, diagnostics, paratyphoid fever, typhoid conjugate vaccines, typhoid fever
0951-7375 Copyright ß 2018 The Author(s). Published by Wolters Kluwer Health, Inc. www.co-infectiousdiseases.com 441
Gastrointestinal infections
Advances in genomics studies offer insights into Recent data from the Typhoid Fever Surveillance in
the pathogenic mechanisms of S. Typhi and Para- Africa Program highlighted marked differences in
typhi. The genome of S. Typhi is notable for the incidence rates between sites in Africa with adjusted
accumulation of multiple pseudogenes, thought rates ranging from 0 in Sudan to 383/100 000 person
to reflect the host-restriction properties of typhoidal years in Burkina Faso. This study also demonstrated
Salmonella as a similar process has been observed in marked intracountry variation, with higher rates in
&&
other host-restricted pathogens [9]. In addition, rural Ghana compared with urban settings [11 ].
S. Typhi possess approximately 300–400 specific Data from ongoing surveillance studies suggest
genes not found in other S. serovars. Many of these that an estimated 27% of typhoid fever cases requir-
gene products are encoded on Salmonella pathoge- ing medical attention occur in children aged 0–4
nicity islands relatively unique to S. Typhi (e.g., SPI- years, of which a substantial proportion (30%)
5, SPI-15, SPI-17, and SPI-18) [6]. For example, S. occur at ages below 2 years [17]. These data are
Typhi and Paratyphi A possess a recently described supported by a recent meta-analysis, underlining
exotoxin termed the typhoid-toxin, which is postu- the large burden of disease in preschool children
lated to have a central role in pathogenesis of enteric [18]. Age-specific incidence may vary by country,
fever (reviewed in ref. [10]). The characterization of risk factors, and force of infection.
virulence factors that may have an important role in Ongoing surveillance studies (including the Sur-
disease pathogenesis could aid the development of veillance of Enteric Fever in Asia Project, Severe
novel vaccines for typhoidal Salmonella. Typhoid in Africa Program, and the Strategic
Typhoid Alliance across Africa programs aim to
better characterize the burden of severe typhoid
BURDEN OF DISEASE disease, refine our understanding of age distribu-
Over recent years, several groups have published tion, and to better characterise the role of chronic
studies refining estimates of the global burden carriers in transmission dynamics. It is hoped that
of enteric fever, which have presented additional data generated from these studies will help to
surveillance data from sub-Saharan Africa and inform future prevention strategies [19,20].
improved our understanding of the disease epidemi-
ology by modelling for specific risk factors
&& &
[11 ,12,13 ]. Estimates for the annual burden of Paratyphoid fever
disease range from 11.9 to 26.7 million cases, with The proportion of disease caused by S. Paratyphi, as
128 00 to 216 500 deaths. The global burden of compared with S. Typhi, is highly variable depend-
enteric fever is concentrated in low- and middle- ing on the geographic context. S. Paratyphi is
income countries. The disease has been essentially thought to be responsible for approximately one-
eliminated as a public-health problem in high- fifth of all enteric fever cases [21]. Increasing inci-
income countries over the past century, owing to dence of disease caused by S. Paratyphi A has been
improvements in water quality, sanitation, and reported over the past 2 decades such that this
hygiene [14]. serovar is responsible for an increasing proportion
&
A consistent finding of burden-of-disease studies of enteric in parts of Asia, including in Nepal [22 ],
performed to date is the high incidence of typhoid Cambodia, [23] and China [24]. For example, in a
fever in South and South-East Asia. Within these recent retrospective study S. Paratyphi A was respon-
regions, the epidemiology of typhoid is complicated sible for 86% of enteric fever cases in Phnom Penh,
by marked inter- and intracountry variation. For Cambodia between 2013 and 2015, increasing from
example, data from the Diseases of Most Impover- 26% in the period 2008–2012 [23]. The highest
ished program have described incidence rates vary- burden of paratyphoid fever is estimated to occur
ing from 24.2/100 000 in Vietnam to 493.5/100 000 in China, with an estimated annual incidence of
in parts of India. Recent studies have demonstrated 150 cases/100 000 person-years. The available data
high rates of typhoid fever in rural areas of Cambo- for Africa indicate that S. Paratyphi are responsible
dia and West Africa, suggesting that the disease is for less than 2% of enteric fever cases [24].
not restricted to urban settings with poor sanitation There is currently no available vaccine against
&&
systems [11 ,15]. S. Paratyphi A. The Ty21a vaccine may confer some
The heterogeneity of typhoid disease epidemi- cross protection against S. Paratyphi B, estimated at
ology may be more pronounced in Africa. Surveil- up to 49% [25]. Individuals vaccinated with Ty21a
lance performed in two sites in Kenya between 2006 have detectable cross-reactive humoral immune
and 2009 found that the incidence of blood-culture responses against S. Paratyphi A in vitro [26–28].
proven typhoid fever in rural and urban sites varied However, field studies in highly endemic areas have
from 29 up to 247-cases/100 000 person-years [16]. shown no conclusive effect of Ty21a on the burden
of S. Paratyphi A [29]. Several candidate paratyphoid that was able to distinguish typhoid from paraty-
vaccines are in development, including live attenu- phoid fever and enteric fever febrile, typhoid nega-
&
ated vaccines and lipopolysaccharide conjugate vac- tive controls and chronic carriers [42,43,44 ].
cines. The increasing global incidence of Transcriptional data from individuals with acute
paratyphoid fever would make a bivalent vaccine, typhoid fever could also be used to identify signa-
providing protection against both S. Typhi and Para- tures reliably identifying enteric fever cases [45,46].
typhi, a valuable public health tool [30].
TREATMENT
DIAGNOSIS The mortality rate of enteric fever in the preanti-
There remains a pressing need to improve upon biotic era was estimated to be between 10 and 30%.
current enteric fever diagnostics and to develop a The availability of traditional first-line antimicro-
new generation of tests that are accessible, cost- bials over the past nearly 70 years (chloramphenicol,
effective, sensitive, and specific [31]. Bone marrow ampicillin, and trimethoprim-sulfamethoxazole)
culture is considered the ‘gold-standard’ diagnostic has reduced the overall mortality rate to less than
test for enteric fever, but frequently impractical to 1%. Unfortunately, their use has been limited by the
perform in many endemic settings. Blood culture is emergence of so-called multidrug-resistant (MDR)
the mainstay of typhoid and paratyphoid diagnosis. strains, defined as resistance to all three of the
A recent systematic review estimated the average ‘traditional’ first-line antimicrobials. Resistance in
diagnostic sensitivity of blood culture to be 61.1% MDR strains are typically conferred via IncHI1 plas-
[95% confidence interval (CI) 51.9–70.3%] [12,32]. mids, harboring resistance genes such as catA, sul1,
Rapid diagnostic tests (RDTs) for typhoid and sul2, dfrA, blaTEM-1, strA, strB, tetA, tetB, tetC, and tetD
paratyphoid fever could theoretically be combined on composite transposons. These MDR-associated
with clinical algorithms to differentiate febrile genes have also been known to integrate within
patients to guide management, particularly in areas the chromosome of H58 S. Typhi in isolates from
lacking well-equipped laboratory facilities. Several countries including India, Nepal, and Bangladesh
&&
RDTs for enter fever diagnosis have been developed, [47 ].
the most commonly of which are the Typhidot/ MDR strains were responsible for several out-
Typhidot-M test, the TUBEX test and Test-It breaks of enteric fever in the 1980/1990s and led to
Typhoid. The current generation of typhoid RDTs the widespread use of fluoroquinolones as first-line
has only modest sensitivity and specificity deter- therapy [2]. Despite considerable success in treat-
mined in meta-analyses and there is insufficient ment of MDR typhoid, the extensive use of fluoro-
evidence to support their exclusive use for the diag- quinolones has since led to the emergence of
&
nosis and management of enteric fever [33 ]. intermediate and fully fluoroquinolone resistant
Other diagnostics in development include anti- strains. Fluoroquinolone resistance occurs mainly
body-in-lymphocyte-supernatant (ALS), which has via chromosomal mutations in the gyrA, gyrB, parC,
demonstrated good sensitivity and specificity in and parE genes. Cumulative mutations correspond to
endemic settings [34–36]. Several polymerase chain the degree of fluoroquinolone, for example, a single
reaction (PCR)-based methods have also been devel- nucleotide polymorphism (SNP) in codon S83F of
oped and demonstrate promising results in some gyrA will produce a low-level resistance (ciprofloxacin
small-scale studies, but there are currently no widely minimal inhibitory concentration [MIC] of 0.125–
used and validated assays in general use, and remain 0.25 mg/l) whereas additional SNPs in gyrA (D87N)
poorly sensitive. The sensitivity of PCR-based assays and parC (S80I) confer a higher level of ciprofloxacin
can be improved by incorporating a pre-enrichment resistance (MIC 8–64 mg/l). In 2017, the World
step [37,38]. Limited laboratory infrastructure, cost, Health Organisation designated fluoroquinolone-
and the length of time required to obtain results resistant Salmonella spp. as a high priority pathogen,
currently serve as deterrents to scalability and expan- identified as one of 12 families of bacteria thought
sive deployment for both molecular diagnostics to pose the greatest risk to human health through
and ALS. rising antimicrobial resistance (AMR) [48].
Future directions for diagnostic biomarker dis- Third-generation cephalosporins are commonly
covery include the application of high-throughput used in the empirical treatment of enteric fever and
technologies on clinical specimens, including mass are a valuable empirical treatment option in the
spectrometry [39], next-generation sequencing, and setting of MDR and of fluoroquinolone resistant
antigen arrays [40,41]. Using mass spectrometry on isolates [49]. However, a recent typhoid outbreak
serum samples from enteric fever patients, Näsström in Sindh, Pakistan was attributable to so-called exten-
and colleagues have identified a set of metabolites sively drug resistant (XDR) S. Typhi H58 defined
0951-7375 Copyright ß 2018 The Author(s). Published by Wolters Kluwer Health, Inc. www.co-infectiousdiseases.com 443
Gastrointestinal infections
as an MDR resistance pattern, combined with typhoid fever and widespread use may be limited by
fluoroquinolone and cephalosporin resistance the cost of treatment [52].
&&
[50 ]. In this outbreak strain, cephalosporin resis- Combination antibiotic therapy is sometimes
tance was mediated by the horizontal acquisition of a used in the treatment of enteric fever, particularly
plasmid encoding the blaCTX-M-15 extended-spectrum when response to treatment is slow; susceptibilities
b-lactamase, in addition to quinolone resistance con- are unknown and when the diagnosis is uncertain
taining genes such as qnrB2, qnrB4. The emergence of [53]. Combination therapy may have synergistic
cephalosporin resistance calls for an urgent reap- effects and reduce the rate of emergence of antibi-
praisal in the use of cephalosporins for treating otic-resistant strains. There is currently limited evi-
enteric fever in South and South-East Asia severely dence from randomized trials to guide this approach
limits potential treatment options and emphasizes [54,55].
the importance of disease prevention. Chloramphenicol, ampicillin, and trimetho-
Azithromycin is increasingly used for the empir- prim-sulfamethoxazole were seldom used after wide-
ical treatment of enteric fever. Although currently spread MDR strains emerged in the 1990s, but recent
rare, isolates with increased azithromycin MICs and data suggest that sensitivity to these agents is re-
&
treatment failure have been reported [51]. Azithro- emerging following their declining use [22 ]. One
mycin resistance is known to be mediated via the study spanning a 9-year period in Nepal suggesting
&&
ereA, msrD, and msrA genes [47 ]. that over 95% of isolates were sensitive to all three
The monobactam aztreonam may be a treat- ‘traditional’ first-line antimicrobials [56] – Fig. 1.
ment option for treatment of fluoroquinolone-resis- However, it is almost inevitable that MDR strains will
tant S. Typhi, particularly in individuals allergic to re-emerge over time with the build-up of sufficient
penicillin. Alternative treatments include tigecy- antimicrobial pressure via uncoordinated and wide-
cline or carbapenems, but there are relatively lim- spread use of these drugs, particularly if coupled with
ited studies describing their use for the treatment of poor surveillance systems. Nevertheless, these drugs
FIGURE 1. Trends in antimicrobial susceptibility of S. Typhi over time. The graph illustrates the proportion of a global
collection of S. Typhi isolates resistant to different antimicrobial agents, systematically consolidated from published reports from
endemic and epidemic sources (1973–2015).
could be used in settings with high fluoroquinolone enteric fever cases in regions of South Asia with high
resistance and evolving cephalosporin resistance – incidence of Rickettsia spp [49,60].
possibly when used in combination or with antibiotic Treatment of chronic carriage may require a
cycling. combination of medical and surgical interventions
Analysis of a global collection of S. Typhi isolates [2]. Fluoroquinolones are commonly used in the
using whole genome sequencing has demonstrated treatment of chronic carriage and treatment with
how a single S. Typhi haplotype, termed H58 (or a 28 day of course of ciprofloxacin (750 mg twice
genotype 4.3.1.), has emerged and spread globally. daily) or norfloxacin (400 mg twice daily) can
Strains of S. Typhi of H58 are associated with multi- achieve clearance in over 80% of patients. Shorter
drug resistance and reduced fluoroquinolone sus- courses (14 days) of fluoroquinolones may also be
ceptibility, and isolates belonging to this genotype efficacious in the treatment of chronic carriage, with
isolates are widely prevalent is South and South-East treatment success ranging from 87 to 100% in pub-
&&
Asia, as well as in Central/Southern Africa [47 ]. lished studies. A prolonged treatment course with
Recent analysis suggests that this haplotype is dis- azithromycin (28 days) may be of use in the man-
placing antibiotic-sensitive strains and may possess agement of chronic carriers infected with fluoro-
a fitness advantage compared with other isolates quinolone-resistant isolates, although this has not
&&
[47 ,57]. In addition, several MDR typhoid epidem- been formally studies in randomised controlled tri-
ics have recently been described in Africa, evolving als. Cholecystectomy may be required in the pres-
independently of the H58 haplotype, suggesting ence of cholelithiasis, the efficacy of which is likely
that S. Typhi is constantly adapting to new anti- to be improved by concomitant administration of
biotics and distinct ecological niches [58]. antibiotics. Patients with concomitant Schistosoma
infection should receive antiparasitic treatment
with praziquantel to manage chronic urinary and
Antimicrobial treatment options intestinal carriage [2,61].
Empirical treatment guidelines for typhoid fever,
where available, are frequently outdated and
require updating to reflect global trends in AMR. PREVENTION
The majority of randomized trials comparing treat- The contribution of unsafe drinking water has been
ments for enteric fever have a small sample size and recognized as central to the spread of typhoid fever
lack statistical power to detect meaningful differ- for over 150 years. Access to clean, safe drinking
ences between interventions, and the optimal water – combined with investment in sanitation
choice of antibiotics and duration of therapy are and hygiene interventions – will be key to reducing
often uncertain [59]. Differences in study end- the global burden of typhoid fever.
points, and failure to report outcomes in culture- The sustained high burden of disease, coupled
negative suspected enteric fever, also complicate with the emergence of drug-resistant strains of
the interpretation of trial data [49]. A summary of S. Typhi, makes prevention via vaccination a
antimicrobial treatment trails is presented in Sup- priority in the short-to-medium term. The Ty21a
plementary Appendix 1, http://links.lww.com/ and Vi-polysaccharide vaccines have demonstrated
COID/A25. efficacy at 2 years of 58% (95% CI 40–71%) and 59%
Recent studies suggest that fluoroquinolones (95% CI 45–69%), respectively, but have limited
should not be recommended for empirical treat- use in the youngest age-group of children due to
ment of enteric fever in South Asia, due to high risk inconvenience in vaccine administration and poor
of treatment failure [71]. Current AMR profiles sug- immunogenicity, respectively [62]. School-based
gest that ceftriaxone or azithromycin represent campaigns as well as delivery strategies of these
appropriate empirical treatment options in South vaccines using the available healthcare structure
and South-East Asia, whereas fluoroquinolones may have been effective in terms of coverage and cost-
represent an appropriate treatment in parts of effectiveness in Asia [63].
Africa, where high-level fluoroquinolone resistance TCVs, in which Vi-polysaccharide is covalently
is currently less common. Oral azithromycin may be linked to carrier proteins, offer several potential
more convenient and cost-effective than parenteral advantages over earlier generation typhoid vac-
ceftriaxone for outpatient management, but wide- cines. The appeal of Vi-conjugate vaccines, relates
spread use of this drug in many parts of South to their capacity to induce immune responses in
Asia today may rapidly lead to development of infants, enhanced immunogenicity in terms of anti-
resistance, highlighting the importance of good body magnitude, quality and duration, and the
microbiological surveillance. Some authors have potential for boosting of immune responses with
advocated the addition of doxycycline for suspected revaccination. Proof-in-principle of TCV efficacy is
0951-7375 Copyright ß 2018 The Author(s). Published by Wolters Kluwer Health, Inc. www.co-infectiousdiseases.com 445
Gastrointestinal infections
0951-7375 Copyright ß 2018 The Author(s). Published by Wolters Kluwer Health, Inc. www.co-infectiousdiseases.com 447
Gastrointestinal infections
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