Invalid MIT-MAGIC-COOKIE-1 key[INFO :0 ] Time

: Wed May 20 16:19:07 2020

[two_cell_evolution.cc :99 ] parameters : <Param>

<Boundary>
<InflowMaterial>
15
</InflowMaterial>
<LidMaterial>
12
</LidMaterial>
<OutflowMaterial>
16
</OutflowMaterial>
</Boundary>
<FiniteElements>
<Degree>
1
</Degree>
</FiniteElements>
<ILUPP>
<MaxMultilevels>
20
</MaxMultilevels>
<MemFactor>
0.6
</MemFactor>
<MinPivot>
0.005
</MinPivot>
<PivotThreshold>
3.5
</PivotThreshold>
<PreconditionerNumber>
1010
</PreconditionerNumber>
<PreprocessingType>
1
</PreprocessingType>
</ILUPP>
<Instationary>
<Endtime>
30.0
</Endtime>
<Method>
CrankNicolson
</Method>
<SolveInstationary>
1
</SolveInstationary>
<Timestep>
1.
</Timestep>
</Instationary>
<LinearAlgebra>
<Implementation>
Naive
</Implementation>
<MatrixFormat>
CSR
</MatrixFormat>
<NameMatrix>
CoupledMatrix
</NameMatrix>
<NameVector>
CoupledVector
</NameVector>
<Platform>
CPU
</Platform>
</LinearAlgebra>
<LinearSolver>
<AbsoluteTolerance>
1.e-12
</AbsoluteTolerance>
<BasisSize>
500
</BasisSize>
<DivergenceLimit>
1.e6
</DivergenceLimit>
<MaximumIterations>
1000
</MaximumIterations>
<Name>
GMRES
</Name>
<Preconditioning>
1
</Preconditioning>
<RelativeTolerance>
1.e-6
</RelativeTolerance>
</LinearSolver>
<Mesh>
<Filename>
square400x400_refine100x100.inp
</Filename>
<InitialRefLevel>
1
</InitialRefLevel>
</Mesh>
<Model>
<D1>
8640000.
</D1>
<D2>
8640000.
</D2>
<DF>
2495.952
</DF>
<DM>
86.4
</DM>
<K>
1.e6
</K>
<a1>
1353600.
</a1>
<a2>
734400.
</a2>
<b1>
676800.
</b1>
<b2>
100800.
</b2>
<b3>
345600.
</b3>
<eta1>
14.4
</eta1>
<eta2>
14.4
</eta2>
<g1>
1.92
</g1>
<g2>
1.92
</g2>
<k1>
1.8e7
</k1>
<k2>
2.3e7
</k2>
<l1>
0.9
</l1>
<l2>
0.8
</l2>
<m1>
0.3
</m1>
<m2>
0.3
</m2>
</Model>
<NonlinearSolver>
<AbsoluteTolerance>
1.e-12
</AbsoluteTolerance>
<AlphaParameterEW2>
2
</AlphaParameterEW2>
<ArmijoDecrease>
0
</ArmijoDecrease>
<ArmijoUpdate>
0
</ArmijoUpdate>
<ConstantForcingTerm>
1.e-4
</ConstantForcingTerm>
<DivergenceLimit>
1.e6
</DivergenceLimit>
<ForcingStrategy>
EisenstatWalker1
</ForcingStrategy>
<GammaParameterEW2>
0.9
</GammaParameterEW2>
<InitialValueForcingTerm>
1.e-3
</InitialValueForcingTerm>
<MaxArmijoIteration>
0
</MaxArmijoIteration>
<MaxValueForcingTerm>
0.9
</MaxValueForcingTerm>
<MaximumIterations>
20
</MaximumIterations>
<RelativeTolerance>
1.e-6
</RelativeTolerance>
<SufficientDecrease>
0
</SufficientDecrease>
<ThetaInitial>
0
</ThetaInitial>
<ThetaMinimal>
0
</ThetaMinimal>
</NonlinearSolver>
<OutputPrefix>
two_cell_evolution
</OutputPrefix>
</Param>

[reader.cc :85 ] Filename :

/home/chensong/HIFLOW/two_cell/hiflow3/build/examples/data/square400x400_refine100x
100.inp
[reader.cc :86 ] Points : 10201
[reader.cc :87 ] Cells : 10000
[reader.cc :88 ] Topological dim : 2
[reader.cc :89 ] Geometrical dim : 2
[two_cell_evolution.cc :156 ] mesh : Initial refinement level =
1
[partitioning.cc :487 ] MetisGraphPartition : partitioning done
[writer.cc :643 ] writer : Mesh cell attributes =
_remote_index_ _sub_domain_
[vector_space.cc :82 ] Finite Element [Q,P] : 1 1
[vector_space.cc :113 ] Finite Element Type : Lagrange
[dof_partition.cc :88 ] #Dofs global domain : 80802
[dof_partition.cc :89 ] Load balancing : 1.0119
[nonlinear_solver.h :160 ] Max iterations : 20
[nonlinear_solver.h :161 ] Atol [convergence] : 1e-12
[nonlinear_solver.h :162 ] Rtol [convergence] : 1e-06
[nonlinear_solver.h :163 ] Rtol [divergence] : 1e+06
[nonlinear_solver.h :160 ] Max iterations : 20
[nonlinear_solver.h :161 ] Atol [convergence] : 1e-12
[nonlinear_solver.h :162 ] Rtol [convergence] : 1e-06
[nonlinear_solver.h :163 ] Rtol [divergence] : 1e+06
[cg.cc :121 ] CG : initial res norm =
0.398904
[cg.cc :154 ] CG : final iterations = 6
[cg.cc :155 ] CG : final abs res norm =
3.44005e-07
[cg.cc :156 ] CG : final rel res norm =
8.62376e-07
[two_cell_evolution.cc :115 ] simulation : Solving instationary
problem
Simulation starts with total F=29.9485, total M=29.9485, total C=0, total P=0
[two_cell_evolution.cc :504 ] timestep : End time = 30
[two_cell_evolution.cc :505 ] timestep : Step length = 1
[two_cell_evolution.cc :515 ] timestep : Solving time step 0
[newton.cc :440 ] Initial res norm : 228689
[newton.cc :446 ] Initial forcing term : 0.001
[newton.cc :250 ] Forcing term : 0.001
[gmres.cc :401 ] GMRES : initial res norm = 228689
[gmres.cc :546 ] GMRES : final iterations = 8
[gmres.cc :547 ] GMRES : final abs res norm =
178.825
[gmres.cc :548 ] GMRES : final rel res norm =
0.000781957
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 178.825
[newton.cc :502 ] LinSolver iter : 8
[newton.cc :503 ] LinSolver abs res : 178.825
[newton.cc :504 ] LinSolver rel res : 0.000781957
[newton.cc :513 ] New forcing term : 7.24851e-13
[newton.cc :250 ] Forcing term : 7.24851e-13
[gmres.cc :401 ] GMRES : initial res norm =
178.825
[gmres.cc :546 ] GMRES : final iterations = 29
[gmres.cc :547 ] GMRES : final abs res norm =
1.21701e-10
[gmres.cc :548 ] GMRES : final rel res norm =
6.80557e-13
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 2
[newton.cc :498 ] Abs res norm : 2.87313e-05
[newton.cc :502 ] LinSolver iter : 29
[newton.cc :503 ] LinSolver abs res : 1.21701e-10
[newton.cc :504 ] LinSolver rel res : 6.80557e-13
[newton.cc :513 ] New forcing term : 1.60666e-07
[newton.cc :529 ] Final res norm : 2.87313e-05
Newton 1 ended with residual norm 2.87313e-05 after 2 iterations.
[newton.cc :440 ] Initial res norm : 0.354547
[newton.cc :446 ] Initial forcing term : 1.60666e-07
[newton.cc :250 ] Forcing term : 1.60666e-07
[gmres.cc :401 ] GMRES : initial res norm =
0.354547
[gmres.cc :546 ] GMRES : final iterations = 12
[gmres.cc :547 ] GMRES : final abs res norm =
2.23205e-08
[gmres.cc :548 ] GMRES : final rel res norm =
6.29549e-08
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 9.3232e-08
[newton.cc :502 ] LinSolver iter : 12
[newton.cc :503 ] LinSolver abs res : 2.23205e-08
[newton.cc :504 ] LinSolver rel res : 6.29549e-08
[newton.cc :513 ] New forcing term : 2.00006e-07
[newton.cc :529 ] Final res norm : 9.3232e-08
Newton 2 ended with residual norm 9.3232e-08 after 1 iterations.
[two_cell_evolution.cc :521 ] timestep : Calculating cytokine
gradients
[cg.cc :121 ] CG : initial res norm =
1.06576
[cg.cc :154 ] CG : final iterations = 9
[cg.cc :155 ] CG : final abs res norm =
6.21988e-07
[cg.cc :156 ] CG : final rel res norm =
5.83609e-07
[cg.cc :121 ] CG : initial res norm =
0.702951
[cg.cc :154 ] CG : final iterations = 9
[cg.cc :155 ] CG : final abs res norm =
4.10248e-07
[cg.cc :156 ] CG : final rel res norm =
5.83609e-07
[two_cell_evolution.cc :534 ] timestep : Calculating total F, M, C
and P
total F =22.1359, total M=22.1359, total C=1.05568e+07, total P=6.96301e+06
[two_cell_evolution.cc :548 ] timestep : Visualizing solution at
time 1 (time-step 1)
[two_cell_evolution.cc :515 ] timestep : Solving time step 1
[newton.cc :440 ] Initial res norm : 145170
[newton.cc :446 ] Initial forcing term : 2.00006e-07
[newton.cc :250 ] Forcing term : 2.00006e-07
[gmres.cc :401 ] GMRES : initial res norm = 145170
[gmres.cc :546 ] GMRES : final iterations = 17
[gmres.cc :547 ] GMRES : final abs res norm =
0.0165026
[gmres.cc :548 ] GMRES : final rel res norm =
1.13677e-07
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 0.0165029
[newton.cc :502 ] LinSolver iter : 17
[newton.cc :503 ] LinSolver abs res : 0.0165026
[newton.cc :504 ] LinSolver rel res : 1.13677e-07
[newton.cc :513 ] New forcing term : 1.92992e-12
[newton.cc :529 ] Final res norm : 0.0165029
Newton 1 ended with residual norm 0.0165029 after 1 iterations.
[newton.cc :440 ] Initial res norm : 0.118224
[newton.cc :446 ] Initial forcing term : 1.92992e-12
[newton.cc :250 ] Forcing term : 1.92992e-12
[gmres.cc :401 ] GMRES : initial res norm =
0.118224
[gmres.cc :546 ] GMRES : final iterations = 18
[gmres.cc :547 ] GMRES : final abs res norm =
9.69174e-13
[gmres.cc :548 ] GMRES : final rel res norm =
8.19776e-12
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 4.70961e-08
[newton.cc :502 ] LinSolver iter : 18
[newton.cc :503 ] LinSolver abs res : 9.69174e-13
[newton.cc :504 ] LinSolver rel res : 8.19776e-12
[newton.cc :513 ] New forcing term : 3.98354e-07
[newton.cc :529 ] Final res norm : 4.70961e-08
Newton 2 ended with residual norm 4.70961e-08 after 1 iterations.
[two_cell_evolution.cc :521 ] timestep : Calculating cytokine
gradients
[cg.cc :121 ] CG : initial res norm =
0.738067
[cg.cc :154 ] CG : final iterations = 9
[cg.cc :155 ] CG : final abs res norm =
2.1239e-07
[cg.cc :156 ] CG : final rel res norm =
2.87765e-07
[cg.cc :121 ] CG : initial res norm =
0.421123
[cg.cc :154 ] CG : final iterations = 9
[cg.cc :155 ] CG : final abs res norm =
1.31074e-07
[cg.cc :156 ] CG : final rel res norm =
3.11248e-07
[two_cell_evolution.cc :534 ] timestep : Calculating total F, M, C
and P
total F =16.3614, total M=16.3614, total C=7.80288e+06, total P=5.14659e+06
[two_cell_evolution.cc :548 ] timestep : Visualizing solution at
time 2 (time-step 2)
[two_cell_evolution.cc :515 ] timestep : Solving time step 2
[newton.cc :440 ] Initial res norm : 46876.2
[newton.cc :446 ] Initial forcing term : 3.98354e-07
[newton.cc :250 ] Forcing term : 3.98354e-07
[gmres.cc :401 ] GMRES : initial res norm =
46876.2
[gmres.cc :546 ] GMRES : final iterations = 16
[gmres.cc :547 ] GMRES : final abs res norm =
0.0127446
[gmres.cc :548 ] GMRES : final rel res norm =
2.71878e-07
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 0.0127446
[newton.cc :502 ] LinSolver iter : 16
[newton.cc :503 ] LinSolver abs res : 0.0127446
[newton.cc :504 ] LinSolver rel res : 2.71878e-07
[newton.cc :513 ] New forcing term : 2.10108e-13
[newton.cc :529 ] Final res norm : 0.0127446
 Newton 1 ended with residual norm 0.0127446 after 1 iterations.
[newton.cc :440 ] Initial res norm : 0.0651188
[newton.cc :446 ] Initial forcing term : 2.10108e-13
[newton.cc :250 ] Forcing term : 2.10108e-13
[gmres.cc :401 ] GMRES : initial res norm =
0.0651188
[gmres.cc :546 ] GMRES : final iterations = 18
[gmres.cc :547 ] GMRES : final abs res norm =
3.92603e-13
[gmres.cc :548 ] GMRES : final rel res norm =
6.02903e-12
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 2.48717e-08
[newton.cc :502 ] LinSolver iter : 18
[newton.cc :503 ] LinSolver abs res : 3.92603e-13
[newton.cc :504 ] LinSolver rel res : 6.02903e-12
[newton.cc :513 ] New forcing term : 3.81938e-07
[newton.cc :529 ] Final res norm : 2.48717e-08
Newton 2 ended with residual norm 2.48717e-08 after 1 iterations.
[two_cell_evolution.cc :521 ] timestep : Calculating cytokine
gradients
[cg.cc :121 ] CG : initial res norm =
0.233313
[cg.cc :154 ] CG : final iterations = 9
[cg.cc :155 ] CG : final abs res norm =
2.07909e-07
[cg.cc :156 ] CG : final rel res norm =
8.91113e-07
[cg.cc :121 ] CG : initial res norm =
0.14906
[cg.cc :154 ] CG : final iterations = 9
[cg.cc :155 ] CG : final abs res norm =
1.23695e-07
[cg.cc :156 ] CG : final rel res norm =
8.29829e-07
[two_cell_evolution.cc :534 ] timestep : Calculating total F, M, C
and P
total F =12.0932, total M=12.0932, total C=5.76736e+06, total P=3.80401e+06
[two_cell_evolution.cc :548 ] timestep : Visualizing solution at
time 3 (time-step 3)
[two_cell_evolution.cc :515 ] timestep : Solving time step 3
[newton.cc :440 ] Initial res norm : 23047
[newton.cc :446 ] Initial forcing term : 3.81938e-07
[newton.cc :250 ] Forcing term : 3.81938e-07
[gmres.cc :401 ] GMRES : initial res norm = 23047
[gmres.cc :546 ] GMRES : final iterations = 16
[gmres.cc :547 ] GMRES : final abs res norm =
0.00540676
[gmres.cc :548 ] GMRES : final rel res norm =
2.34597e-07
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 0.00540677
[newton.cc :502 ] LinSolver iter : 16
[newton.cc :503 ] LinSolver abs res : 0.00540676
[newton.cc :504 ] LinSolver rel res : 2.34597e-07
[newton.cc :513 ] New forcing term : 5.12548e-13
[newton.cc :529 ] Final res norm : 0.00540677
Newton 1 ended with residual norm 0.00540677 after 1 iterations.
[newton.cc :440 ] Initial res norm : 0.0448322
[newton.cc :446 ] Initial forcing term : 5.12548e-13
[newton.cc :250 ] Forcing term : 5.12548e-13
[gmres.cc :401 ] GMRES : initial res norm =
0.0448322
[gmres.cc :546 ] GMRES : final iterations = 17
[gmres.cc :547 ] GMRES : final abs res norm =
8.4766e-13
[gmres.cc :548 ] GMRES : final rel res norm =
1.89074e-11
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 1.31204e-08
[newton.cc :502 ] LinSolver iter : 17
[newton.cc :503 ] LinSolver abs res : 8.4766e-13
[newton.cc :504 ] LinSolver rel res : 1.89074e-11
[newton.cc :513 ] New forcing term : 2.92636e-07
[newton.cc :529 ] Final res norm : 1.31204e-08
Newton 2 ended with residual norm 1.31204e-08 after 1 iterations.
[two_cell_evolution.cc :521 ] timestep : Calculating cytokine
gradients
[cg.cc :121 ] CG : initial res norm =
0.0841793
[cg.cc :154 ] CG : final iterations = 10
[cg.cc :155 ] CG : final abs res norm =
7.72561e-08
[cg.cc :156 ] CG : final rel res norm =
9.17757e-07
[cg.cc :121 ] CG : initial res norm =
0.0650433
[cg.cc :154 ] CG : final iterations = 10
[cg.cc :155 ] CG : final abs res norm =
4.65348e-08
[cg.cc :156 ] CG : final rel res norm =
7.15443e-07
[two_cell_evolution.cc :534 ] timestep : Calculating total F, M, C
and P
total F =8.93845, total M=8.93847, total C=4.26284e+06, total P=2.81166e+06
[two_cell_evolution.cc :548 ] timestep : Visualizing solution at
time 4 (time-step 4)
[two_cell_evolution.cc :515 ] timestep : Solving time step 4
[newton.cc :440 ] Initial res norm : 14245.1
[newton.cc :446 ] Initial forcing term : 2.92636e-07
[newton.cc :250 ] Forcing term : 2.92636e-07
[gmres.cc :401 ] GMRES : initial res norm =
14245.1
[gmres.cc :546 ] GMRES : final iterations = 16
[gmres.cc :547 ] GMRES : final abs res norm =
0.00243216
[gmres.cc :548 ] GMRES : final rel res norm =
1.70736e-07
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 0.0024322
[newton.cc :502 ] LinSolver iter : 16
[newton.cc :503 ] LinSolver abs res : 0.00243216
[newton.cc :504 ] LinSolver rel res : 1.70736e-07
[newton.cc :513 ] New forcing term : 3.042e-12
[newton.cc :529 ] Final res norm : 0.0024322
Newton 1 ended with residual norm 0.0024322 after 1 iterations.
[newton.cc :440 ] Initial res norm : 0.0350468
[newton.cc :446 ] Initial forcing term : 3.042e-12
[newton.cc :250 ] Forcing term : 3.042e-12
[gmres.cc :401 ] GMRES : initial res norm =
0.0350468
[gmres.cc :546 ] GMRES : final iterations = 17
[gmres.cc :547 ] GMRES : final abs res norm =
4.91809e-13
[gmres.cc :548 ] GMRES : final rel res norm =
1.40329e-11
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 6.90496e-09
[newton.cc :502 ] LinSolver iter : 17
[newton.cc :503 ] LinSolver abs res : 4.91809e-13
[newton.cc :504 ] LinSolver rel res : 1.40329e-11
[newton.cc :513 ] New forcing term : 1.97007e-07
[newton.cc :529 ] Final res norm : 6.90496e-09
Newton 2 ended with residual norm 6.90496e-09 after 1 iterations.
[two_cell_evolution.cc :521 ] timestep : Calculating cytokine
gradients
[cg.cc :121 ] CG : initial res norm =
0.0311657
[cg.cc :154 ] CG : final iterations = 12
[cg.cc :155 ] CG : final abs res norm =
2.0385e-08
[cg.cc :156 ] CG : final rel res norm =
6.54083e-07
[cg.cc :121 ] CG : initial res norm =
0.0316245
[cg.cc :154 ] CG : final iterations = 10
[cg.cc :155 ] CG : final abs res norm =
2.60668e-08
[cg.cc :156 ] CG : final rel res norm =
8.24259e-07
[two_cell_evolution.cc :534 ] timestep : Calculating total F, M, C
and P
total F =6.60669, total M=6.6067, total C=3.1508e+06, total P=2.07819e+06
[two_cell_evolution.cc :548 ] timestep : Visualizing solution at
time 5 (time-step 5)
[two_cell_evolution.cc :515 ] timestep : Solving time step 5
[newton.cc :440 ] Initial res norm : 9925.82
[newton.cc :446 ] Initial forcing term : 1.97007e-07
[newton.cc :250 ] Forcing term : 1.97007e-07
[gmres.cc :401 ] GMRES : initial res norm =
9925.82
[gmres.cc :546 ] GMRES : final iterations = 16
[gmres.cc :547 ] GMRES : final abs res norm =
0.00124109
[gmres.cc :548 ] GMRES : final rel res norm =
1.25036e-07
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 0.00124111
[newton.cc :502 ] LinSolver iter : 16
[newton.cc :503 ] LinSolver abs res : 0.00124109
[newton.cc :504 ] LinSolver rel res : 1.25036e-07
[newton.cc :513 ] New forcing term : 2.54256e-12
[newton.cc :529 ] Final res norm : 0.00124111
Newton 1 ended with residual norm 0.00124111 after 1 iterations.
[newton.cc :440 ] Initial res norm : 0.0281328
[newton.cc :446 ] Initial forcing term : 2.54256e-12
[newton.cc :250 ] Forcing term : 2.54256e-12
[gmres.cc :401 ] GMRES : initial res norm =
0.0281328
[gmres.cc :546 ] GMRES : final iterations = 17
[gmres.cc :547 ] GMRES : final abs res norm =
3.13612e-13
[gmres.cc :548 ] GMRES : final rel res norm =
1.11476e-11
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 3.61907e-09
[newton.cc :502 ] LinSolver iter : 17
[newton.cc :503 ] LinSolver abs res : 3.13612e-13
[newton.cc :504 ] LinSolver rel res : 1.11476e-11
[newton.cc :513 ] New forcing term : 1.28631e-07
[newton.cc :529 ] Final res norm : 3.61907e-09
Newton 2 ended with residual norm 3.61907e-09 after 1 iterations.
[two_cell_evolution.cc :521 ] timestep : Calculating cytokine
gradients
[cg.cc :121 ] CG : initial res norm =
0.0116113
[cg.cc :154 ] CG : final iterations = 10
[cg.cc :155 ] CG : final abs res norm =
8.25184e-09
[cg.cc :156 ] CG : final rel res norm =
7.10674e-07
[cg.cc :121 ] CG : initial res norm =
0.0174767
[cg.cc :154 ] CG : final iterations = 10
[cg.cc :155 ] CG : final abs res norm =
1.32742e-08
[cg.cc :156 ] CG : final rel res norm =
7.59534e-07
[two_cell_evolution.cc :534 ] timestep : Calculating total F, M, C
and P
total F =4.88321, total M=4.88321, total C=2.32885e+06, total P=1.53605e+06
[two_cell_evolution.cc :548 ] timestep : Visualizing solution at
time 6 (time-step 6)
[two_cell_evolution.cc :515 ] timestep : Solving time step 6
[newton.cc :440 ] Initial res norm : 7171.57
[newton.cc :446 ] Initial forcing term : 1.28631e-07
[newton.cc :250 ] Forcing term : 1.28631e-07
[gmres.cc :401 ] GMRES : initial res norm =
7171.57
[gmres.cc :546 ] GMRES : final iterations = 16
[gmres.cc :547 ] GMRES : final abs res norm =
0.00067647
[gmres.cc :548 ] GMRES : final rel res norm =
9.43266e-08
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 0.000676493
[newton.cc :502 ] LinSolver iter : 16
[newton.cc :503 ] LinSolver abs res : 0.00067647
[newton.cc :504 ] LinSolver rel res : 9.43266e-08
[newton.cc :513 ] New forcing term : 3.1162e-12
[newton.cc :529 ] Final res norm : 0.000676493
Newton 1 ended with residual norm 0.000676493 after 1 iterations.
[newton.cc :440 ] Initial res norm : 0.0249203
[newton.cc :446 ] Initial forcing term : 3.1162e-12
[newton.cc :250 ] Forcing term : 3.1162e-12
[gmres.cc :401 ] GMRES : initial res norm =
0.0249203
[gmres.cc :546 ] GMRES : final iterations = 17
[gmres.cc :547 ] GMRES : final abs res norm =
2.29398e-13
[gmres.cc :548 ] GMRES : final rel res norm =
9.20526e-12
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 1.88491e-09
[newton.cc :502 ] LinSolver iter : 17
[newton.cc :503 ] LinSolver abs res : 2.29398e-13
[newton.cc :504 ] LinSolver rel res : 9.20526e-12
[newton.cc :513 ] New forcing term : 7.56283e-08
[newton.cc :529 ] Final res norm : 1.88491e-09
Newton 2 ended with residual norm 1.88491e-09 after 1 iterations.
[two_cell_evolution.cc :521 ] timestep : Calculating cytokine
gradients
[cg.cc :121 ] CG : initial res norm =
0.00434727
[cg.cc :154 ] CG : final iterations = 12
[cg.cc :155 ] CG : final abs res norm =
2.99306e-09
[cg.cc :156 ] CG : final rel res norm =
6.88491e-07
[cg.cc :121 ] CG : initial res norm =
0.0106037
[cg.cc :154 ] CG : final iterations = 9
[cg.cc :155 ] CG : final abs res norm =
1.05837e-08
[cg.cc :156 ] CG : final rel res norm =
9.98116e-07
[two_cell_evolution.cc :534 ] timestep : Calculating total F, M, C
and P
total F =3.60933, total M=3.60933, total C=1.72133e+06, total P=1.13535e+06
[two_cell_evolution.cc :548 ] timestep : Visualizing solution at
time 7 (time-step 7)
[two_cell_evolution.cc :515 ] timestep : Solving time step 7
[newton.cc :440 ] Initial res norm : 5265.25
[newton.cc :446 ] Initial forcing term : 7.56283e-08
[newton.cc :250 ] Forcing term : 7.56283e-08
[gmres.cc :401 ] GMRES : initial res norm =
5265.25
[gmres.cc :546 ] GMRES : final iterations = 17
[gmres.cc :547 ] GMRES : final abs res norm =
0.000159834
[gmres.cc :548 ] GMRES : final rel res norm =
3.03564e-08
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 0.000159888
[newton.cc :502 ] LinSolver iter : 17
[newton.cc :503 ] LinSolver abs res : 0.000159834
[newton.cc :504 ] LinSolver rel res : 3.03564e-08
[newton.cc :513 ] New forcing term : 1.02703e-11
[newton.cc :529 ] Final res norm : 0.000159888
Newton 1 ended with residual norm 0.000159888 after 1 iterations.
[newton.cc :440 ] Initial res norm : 0.0221559
[newton.cc :446 ] Initial forcing term : 1.02703e-11
[newton.cc :250 ] Forcing term : 1.02703e-11
[gmres.cc :401 ] GMRES : initial res norm =
0.0221559
[gmres.cc :546 ] GMRES : final iterations = 16
[gmres.cc :547 ] GMRES : final abs res norm =
7.6075e-13
[gmres.cc :548 ] GMRES : final rel res norm =
3.43363e-11
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 9.72406e-10
[newton.cc :502 ] LinSolver iter : 16
[newton.cc :503 ] LinSolver abs res : 7.6075e-13
[newton.cc :504 ] LinSolver rel res : 3.43363e-11
[newton.cc :513 ] New forcing term : 4.3855e-08
[newton.cc :529 ] Final res norm : 9.72406e-10
Newton 2 ended with residual norm 9.72406e-10 after 1 iterations.
[two_cell_evolution.cc :521 ] timestep : Calculating cytokine
gradients
[cg.cc :121 ] CG : initial res norm =
0.00164328
[cg.cc :154 ] CG : final iterations = 10
[cg.cc :155 ] CG : final abs res norm =
1.10734e-09
[cg.cc :156 ] CG : final rel res norm =
6.73859e-07
[cg.cc :121 ] CG : initial res norm =
0.00693056
[cg.cc :154 ] CG : final iterations = 9
[cg.cc :155 ] CG : final abs res norm =
6.18296e-09
[cg.cc :156 ] CG : final rel res norm =
8.9213e-07
[two_cell_evolution.cc :534 ] timestep : Calculating total F, M, C
and P
total F =2.66777, total M=2.66777, total C=1.27229e+06, total P=839169
[two_cell_evolution.cc :548 ] timestep : Visualizing solution at
time 8 (time-step 8)
[two_cell_evolution.cc :515 ] timestep : Solving time step 8
[newton.cc :440 ] Initial res norm : 3872.76
[newton.cc :446 ] Initial forcing term : 4.3855e-08
[newton.cc :250 ] Forcing term : 4.3855e-08
[gmres.cc :401 ] GMRES : initial res norm =
3872.76
[gmres.cc :546 ] GMRES : final iterations = 17
[gmres.cc :547 ] GMRES : final abs res norm =
0.000100965
[gmres.cc :548 ] GMRES : final rel res norm =
2.60706e-08
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 0.000101012
[newton.cc :502 ] LinSolver iter : 17
[newton.cc :503 ] LinSolver abs res : 0.000100965
[newton.cc :504 ] LinSolver rel res : 2.60706e-08
[newton.cc :513 ] New forcing term : 1.2181e-11
[newton.cc :529 ] Final res norm : 0.000101012
Newton 1 ended with residual norm 0.000101012 after 1 iterations.
[newton.cc :440 ] Initial res norm : 0.0212403
[newton.cc :446 ] Initial forcing term : 1.2181e-11
[newton.cc :250 ] Forcing term : 1.2181e-11
[gmres.cc :401 ] GMRES : initial res norm =
0.0212403
[gmres.cc :546 ] GMRES : final iterations = 16
[gmres.cc :547 ] GMRES : final abs res norm =
5.53723e-13
[gmres.cc :548 ] GMRES : final rel res norm =
2.60694e-11
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 4.9446e-10
[newton.cc :502 ] LinSolver iter : 16
[newton.cc :503 ] LinSolver abs res : 5.53723e-13
[newton.cc :504 ] LinSolver rel res : 2.60694e-11
[newton.cc :513 ] New forcing term : 2.32532e-08
[newton.cc :529 ] Final res norm : 4.9446e-10
Newton 2 ended with residual norm 4.9446e-10 after 1 iterations.
[two_cell_evolution.cc :521 ] timestep : Calculating cytokine
gradients
[cg.cc :121 ] CG : initial res norm =
0.000635032
[cg.cc :154 ] CG : final iterations = 12
[cg.cc :155 ] CG : final abs res norm =
4.47421e-10
[cg.cc :156 ] CG : final rel res norm =
7.04565e-07
[cg.cc :121 ] CG : initial res norm =
0.00472546
[cg.cc :154 ] CG : final iterations = 9
[cg.cc :155 ] CG : final abs res norm =
4.07135e-09
[cg.cc :156 ] CG : final rel res norm =
8.61577e-07
[two_cell_evolution.cc :534 ] timestep : Calculating total F, M, C
and P
total F =1.97183, total M=1.97183, total C=940387, total P=620255
[two_cell_evolution.cc :548 ] timestep : Visualizing solution at
time 9 (time-step 9)
[two_cell_evolution.cc :515 ] timestep : Solving time step 9
[newton.cc :440 ] Initial res norm : 2861.99
[newton.cc :446 ] Initial forcing term : 2.32532e-08
[newton.cc :250 ] Forcing term : 2.32532e-08
[gmres.cc :401 ] GMRES : initial res norm =
2861.99
[gmres.cc :546 ] GMRES : final iterations = 18
[gmres.cc :547 ] GMRES : final abs res norm =
2.39556e-05
[gmres.cc :548 ] GMRES : final rel res norm =
8.37025e-09
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 2.41133e-05
[newton.cc :502 ] LinSolver iter : 18
[newton.cc :503 ] LinSolver abs res : 2.39556e-05
[newton.cc :504 ] LinSolver rel res : 8.37025e-09
[newton.cc :513 ] New forcing term : 5.51029e-11
[newton.cc :529 ] Final res norm : 2.41133e-05
Newton 1 ended with residual norm 2.41133e-05 after 1 iterations.
[newton.cc :440 ] Initial res norm : 0.0201724
[newton.cc :446 ] Initial forcing term : 5.51029e-11
[newton.cc :250 ] Forcing term : 5.51029e-11
[gmres.cc :401 ] GMRES : initial res norm =
0.0201724
[gmres.cc :546 ] GMRES : final iterations = 16
[gmres.cc :547 ] GMRES : final abs res norm =
3.94166e-13
[gmres.cc :548 ] GMRES : final rel res norm =
1.95399e-11
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 2.45897e-10
[newton.cc :502 ] LinSolver iter : 16
[newton.cc :503 ] LinSolver abs res : 3.94166e-13
[newton.cc :504 ] LinSolver rel res : 1.95399e-11
[newton.cc :513 ] New forcing term : 1.21702e-08
[newton.cc :529 ] Final res norm : 2.45897e-10
Newton 2 ended with residual norm 2.45897e-10 after 1 iterations.
[two_cell_evolution.cc :521 ] timestep : Calculating cytokine
gradients
[cg.cc :121 ] CG : initial res norm =
0.000262772
[cg.cc :154 ] CG : final iterations = 10
[cg.cc :155 ] CG : final abs res norm =
2.02043e-10
[cg.cc :156 ] CG : final rel res norm =
7.68892e-07
[cg.cc :121 ] CG : initial res norm =
0.00330769
[cg.cc :154 ] CG : final iterations = 9
[cg.cc :155 ] CG : final abs res norm =
2.68375e-09
[cg.cc :156 ] CG : final rel res norm =
8.11366e-07
[two_cell_evolution.cc :534 ] timestep : Calculating total F, M, C
and P
 total F =1.45744, total M=1.45744, total C=695069, total P=458450
[two_cell_evolution.cc :548 ] timestep : Visualizing solution at
time 10 (time-step 10)
[two_cell_evolution.cc :515 ] timestep : Solving time step 10
[newton.cc :440 ] Initial res norm : 2109.48
[newton.cc :446 ] Initial forcing term : 1.21702e-08
[newton.cc :250 ] Forcing term : 1.21702e-08
[gmres.cc :401 ] GMRES : initial res norm =
2109.48
[gmres.cc :546 ] GMRES : final iterations = 18
[gmres.cc :547 ] GMRES : final abs res norm =
1.62765e-05
[gmres.cc :548 ] GMRES : final rel res norm =
7.71591e-09
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 1.63792e-05
[newton.cc :502 ] LinSolver iter : 18
[newton.cc :503 ] LinSolver abs res : 1.62765e-05
[newton.cc :504 ] LinSolver rel res : 7.71591e-09
[newton.cc :513 ] New forcing term : 4.86619e-11
[newton.cc :529 ] Final res norm : 1.63792e-05
Newton 1 ended with residual norm 1.63792e-05 after 1 iterations.
[newton.cc :440 ] Initial res norm : 0.0199679
[newton.cc :446 ] Initial forcing term : 4.86619e-11
[newton.cc :250 ] Forcing term : 4.86619e-11
[gmres.cc :401 ] GMRES : initial res norm =
0.0199679
[gmres.cc :546 ] GMRES : final iterations = 16
[gmres.cc :547 ] GMRES : final abs res norm =
3.15114e-13
[gmres.cc :548 ] GMRES : final rel res norm =
1.5781e-11
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 1.18002e-10
[newton.cc :502 ] LinSolver iter : 16
[newton.cc :503 ] LinSolver abs res : 3.15114e-13
[newton.cc :504 ] LinSolver rel res : 1.5781e-11
[newton.cc :513 ] New forcing term : 5.89379e-09
[newton.cc :529 ] Final res norm : 1.18002e-10
Newton 2 ended with residual norm 1.18002e-10 after 1 iterations.
[two_cell_evolution.cc :521 ] timestep : Calculating cytokine
gradients
[cg.cc :121 ] CG : initial res norm =
0.000129755
[cg.cc :154 ] CG : final iterations = 10
[cg.cc :155 ] CG : final abs res norm =
7.79407e-11
[cg.cc :156 ] CG : final rel res norm =
6.00677e-07
[cg.cc :121 ] CG : initial res norm =
0.00234663
[cg.cc :154 ] CG : final iterations = 9
[cg.cc :155 ] CG : final abs res norm =
1.91311e-09
[cg.cc :156 ] CG : final rel res norm =
8.15258e-07
[two_cell_evolution.cc :534 ] timestep : Calculating total F, M, C
and P
total F =1.07724, total M=1.07724, total C=513747, total P=338854
[two_cell_evolution.cc :548 ] timestep : Visualizing solution at
time 11 (time-step 11)
[two_cell_evolution.cc :515 ] timestep : Solving time step 11
[newton.cc :440 ] Initial res norm : 1562.66
[newton.cc :446 ] Initial forcing term : 5.89379e-09
[newton.cc :250 ] Forcing term : 5.89379e-09
[gmres.cc :401 ] GMRES : initial res norm =
1562.66
[gmres.cc :546 ] GMRES : final iterations = 19
[gmres.cc :547 ] GMRES : final abs res norm =
3.87559e-06
[gmres.cc :548 ] GMRES : final rel res norm =
2.48013e-09
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 4.13044e-06
[newton.cc :502 ] LinSolver iter : 19
[newton.cc :503 ] LinSolver abs res : 3.87559e-06
[newton.cc :504 ] LinSolver rel res : 2.48013e-09
[newton.cc :513 ] New forcing term : 1.63085e-10
[newton.cc :529 ] Final res norm : 4.13044e-06
Newton 1 ended with residual norm 4.13044e-06 after 1 iterations.
[newton.cc :440 ] Initial res norm : 0.019528
[newton.cc :446 ] Initial forcing term : 1.63085e-10
[newton.cc :250 ] Forcing term : 1.63085e-10
[gmres.cc :401 ] GMRES : initial res norm =
0.019528
[gmres.cc :546 ] GMRES : final iterations = 15
[gmres.cc :547 ] GMRES : final abs res norm =
1.21407e-12
[gmres.cc :548 ] GMRES : final rel res norm =
6.21706e-11
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 5.32013e-11
[newton.cc :502 ] LinSolver iter : 15
[newton.cc :503 ] LinSolver abs res : 1.21407e-12
[newton.cc :504 ] LinSolver rel res : 6.21706e-11
[newton.cc :513 ] New forcing term : 2.66219e-09
[newton.cc :529 ] Final res norm : 5.32013e-11
Newton 2 ended with residual norm 5.32013e-11 after 1 iterations.
[two_cell_evolution.cc :521 ] timestep : Calculating cytokine
gradients
[cg.cc :121 ] CG : initial res norm =
8.52235e-05
[cg.cc :154 ] CG : final iterations = 11
[cg.cc :155 ] CG : final abs res norm =
7.89836e-11
[cg.cc :156 ] CG : final rel res norm =
9.26782e-07
[cg.cc :121 ] CG : initial res norm =
0.00167789
[cg.cc :154 ] CG : final iterations = 9
[cg.cc :155 ] CG : final abs res norm =
1.35108e-09
[cg.cc :156 ] CG : final rel res norm =
8.05225e-07
[two_cell_evolution.cc :534 ] timestep : Calculating total F, M, C
and P
total F =0.796218, total M=0.79622, total C=379726, total P=250458
[two_cell_evolution.cc :548 ] timestep : Visualizing solution at
time 12 (time-step 12)
[two_cell_evolution.cc :515 ] timestep : Solving time step 12
[newton.cc :440 ] Initial res norm : 1151.9
[newton.cc :446 ] Initial forcing term : 2.66219e-09
[newton.cc :250 ] Forcing term : 2.66219e-09
[gmres.cc :401 ] GMRES : initial res norm = 1151.9
[gmres.cc :546 ] GMRES : final iterations = 19
[gmres.cc :547 ] GMRES : final abs res norm =
2.84348e-06
[gmres.cc :548 ] GMRES : final rel res norm =
2.46852e-09
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 2.99552e-06
[newton.cc :502 ] LinSolver iter : 19
[newton.cc :503 ] LinSolver abs res : 2.84348e-06
[newton.cc :504 ] LinSolver rel res : 2.46852e-09
[newton.cc :513 ] New forcing term : 1.31994e-10
[newton.cc :529 ] Final res norm : 2.99552e-06
Newton 1 ended with residual norm 2.99552e-06 after 1 iterations.
[newton.cc :440 ] Initial res norm : 0.0194921
[newton.cc :446 ] Initial forcing term : 1.31994e-10
[newton.cc :250 ] Forcing term : 1.31994e-10
[gmres.cc :401 ] GMRES : initial res norm =
0.0194921
[gmres.cc :546 ] GMRES : final iterations = 15
[gmres.cc :547 ] GMRES : final abs res norm =
9.78319e-13
[gmres.cc :548 ] GMRES : final rel res norm =
5.01904e-11
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 2.12461e-11
[newton.cc :502 ] LinSolver iter : 15
[newton.cc :503 ] LinSolver abs res : 9.78319e-13
[newton.cc :504 ] LinSolver rel res : 5.01904e-11
[newton.cc :513 ] New forcing term : 1.03979e-09
[newton.cc :529 ] Final res norm : 2.12461e-11
Newton 2 ended with residual norm 2.12461e-11 after 1 iterations.
[two_cell_evolution.cc :521 ] timestep : Calculating cytokine
gradients
[cg.cc :121 ] CG : initial res norm =
6.87072e-05
[cg.cc :154 ] CG : final iterations = 10
[cg.cc :155 ] CG : final abs res norm =
4.17656e-11
[cg.cc :156 ] CG : final rel res norm =
6.07878e-07
[cg.cc :121 ] CG : initial res norm =
0.00120441
[cg.cc :154 ] CG : final iterations = 9
[cg.cc :155 ] CG : final abs res norm =
9.9351e-10
[cg.cc :156 ] CG : final rel res norm =
8.24896e-07
[two_cell_evolution.cc :534 ] timestep : Calculating total F, M, C
and P
total F =0.588509, total M=0.58851, total C=280667, total P=185121
[two_cell_evolution.cc :548 ] timestep : Visualizing solution at
time 13 (time-step 13)
[two_cell_evolution.cc :515 ] timestep : Solving time step 13
[newton.cc :440 ] Initial res norm : 856.015
[newton.cc :446 ] Initial forcing term : 1.03979e-09
[newton.cc :250 ] Forcing term : 1.03979e-09
[gmres.cc :401 ] GMRES : initial res norm =
856.015
[gmres.cc :546 ] GMRES : final iterations = 20
[gmres.cc :547 ] GMRES : final abs res norm =
7.24598e-07
[gmres.cc :548 ] GMRES : final rel res norm =
8.46478e-10
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 1.04628e-06
[newton.cc :502 ] LinSolver iter : 20
[newton.cc :503 ] LinSolver abs res : 7.24598e-07
[newton.cc :504 ] LinSolver rel res : 8.46478e-10
[newton.cc :513 ] New forcing term : 3.75786e-10
[newton.cc :529 ] Final res norm : 1.04628e-06
Newton 1 ended with residual norm 1.04628e-06 after 1 iterations.
[newton.cc :440 ] Initial res norm : 0.0192813
[newton.cc :446 ] Initial forcing term : 3.75786e-10
[newton.cc :250 ] Forcing term : 3.75786e-10
[gmres.cc :401 ] GMRES : initial res norm =
0.0192813
[gmres.cc :546 ] GMRES : final iterations = 14
[gmres.cc :547 ] GMRES : final abs res norm =
3.84989e-12
[gmres.cc :548 ] GMRES : final rel res norm =
1.9967e-10
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 7.21886e-12
[newton.cc :502 ] LinSolver iter : 14
[newton.cc :503 ] LinSolver abs res : 3.84989e-12
[newton.cc :504 ] LinSolver rel res : 1.9967e-10
[newton.cc :513 ] New forcing term : 1.74727e-10
[newton.cc :529 ] Final res norm : 7.21886e-12
Newton 2 ended with residual norm 7.21886e-12 after 1 iterations.
[two_cell_evolution.cc :521 ] timestep : Calculating cytokine
gradients
[cg.cc :121 ] CG : initial res norm =
6.02835e-05
[cg.cc :154 ] CG : final iterations = 10
[cg.cc :155 ] CG : final abs res norm =
4.32573e-11
[cg.cc :156 ] CG : final rel res norm =
7.17565e-07
[cg.cc :121 ] CG : initial res norm =
0.000866616
[cg.cc :154 ] CG : final iterations = 9
[cg.cc :155 ] CG : final abs res norm =
7.19553e-10
[cg.cc :156 ] CG : final rel res norm =
8.30302e-07
[two_cell_evolution.cc :534 ] timestep : Calculating total F, M, C
and P
total F =0.434985, total M=0.434986, total C=207449, total P=136828
[two_cell_evolution.cc :548 ] timestep : Visualizing solution at
time 14 (time-step 14)
[two_cell_evolution.cc :515 ] timestep : Solving time step 14
[newton.cc :440 ] Initial res norm : 631.145
[newton.cc :446 ] Initial forcing term : 1.74727e-10
[newton.cc :250 ] Forcing term : 1.74727e-10
[gmres.cc :401 ] GMRES : initial res norm =
631.145
[gmres.cc :546 ] GMRES : final iterations = 22
[gmres.cc :547 ] GMRES : final abs res norm =
7.07264e-08
[gmres.cc :548 ] GMRES : final rel res norm =
1.12061e-10
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 5.37617e-07
[newton.cc :502 ] LinSolver iter : 22
[newton.cc :503 ] LinSolver abs res : 7.07264e-08
[newton.cc :504 ] LinSolver rel res : 1.12061e-10
[newton.cc :513 ] New forcing term : 7.39753e-10
[newton.cc :529 ] Final res norm : 5.37617e-07
Newton 1 ended with residual norm 5.37617e-07 after 1 iterations.
[newton.cc :440 ] Initial res norm : 0.0192683
[newton.cc :446 ] Initial forcing term : 7.39753e-10
[newton.cc :250 ] Forcing term : 7.39753e-10
[gmres.cc :401 ] GMRES : initial res norm =
0.0192683
[gmres.cc :546 ] GMRES : final iterations = 13
[gmres.cc :547 ] GMRES : final abs res norm =
1.35881e-11
[gmres.cc :548 ] GMRES : final rel res norm =
7.05206e-10
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 1.36006e-11
[newton.cc :502 ] LinSolver iter : 13
[newton.cc :503 ] LinSolver abs res : 1.35881e-11
[newton.cc :504 ] LinSolver rel res : 7.05206e-10
[newton.cc :513 ] New forcing term : 6.47136e-13
[newton.cc :529 ] Final res norm : 1.36006e-11
Newton 2 ended with residual norm 1.36006e-11 after 1 iterations.
[two_cell_evolution.cc :521 ] timestep : Calculating cytokine
gradients
[cg.cc :121 ] CG : initial res norm =
5.44913e-05
[cg.cc :154 ] CG : final iterations = 10
[cg.cc :155 ] CG : final abs res norm =
3.67913e-11
[cg.cc :156 ] CG : final rel res norm =
6.75178e-07
[cg.cc :121 ] CG : initial res norm =
0.000624331
[cg.cc :154 ] CG : final iterations = 9
[cg.cc :155 ] CG : final abs res norm =
5.34667e-10
[cg.cc :156 ] CG : final rel res norm =
8.56384e-07
[two_cell_evolution.cc :534 ] timestep : Calculating total F, M, C
and P
total F =0.321511, total M=0.321511, total C=153332, total P=101134
[two_cell_evolution.cc :548 ] timestep : Visualizing solution at
time 15 (time-step 15)
[two_cell_evolution.cc :515 ] timestep : Solving time step 15
[newton.cc :440 ] Initial res norm : 472.026
[newton.cc :446 ] Initial forcing term : 6.47136e-13
[newton.cc :250 ] Forcing term : 6.47136e-13
[gmres.cc :401 ] GMRES : initial res norm =
472.026
[gmres.cc :546 ] GMRES : final iterations = 28
[gmres.cc :547 ] GMRES : final abs res norm =
2.38118e-10
[gmres.cc :548 ] GMRES : final rel res norm =
5.0446e-13
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 3.90896e-07
[newton.cc :502 ] LinSolver iter : 28
[newton.cc :503 ] LinSolver abs res : 2.38118e-10
[newton.cc :504 ] LinSolver rel res : 5.0446e-13
[newton.cc :513 ] New forcing term : 8.27619e-10
[newton.cc :529 ] Final res norm : 3.90896e-07
Newton 1 ended with residual norm 3.90896e-07 after 1 iterations.
[newton.cc :440 ] Initial res norm : 0.0191471
[newton.cc :446 ] Initial forcing term : 8.27619e-10
[newton.cc :250 ] Forcing term : 8.27619e-10
[gmres.cc :401 ] GMRES : initial res norm =
0.0191471
[gmres.cc :546 ] GMRES : final iterations = 13
[gmres.cc :547 ] GMRES : final abs res norm =
1.39529e-11
[gmres.cc :548 ] GMRES : final rel res norm =
7.2872e-10
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 1.42988e-11
[newton.cc :502 ] LinSolver iter : 13
[newton.cc :503 ] LinSolver abs res : 1.39529e-11
[newton.cc :504 ] LinSolver rel res : 7.2872e-10
[newton.cc :513 ] New forcing term : 1.80628e-11
[newton.cc :529 ] Final res norm : 1.42988e-11
Newton 2 ended with residual norm 1.42988e-11 after 1 iterations.
[two_cell_evolution.cc :521 ] timestep : Calculating cytokine
gradients
[cg.cc :121 ] CG : initial res norm =
4.99257e-05
[cg.cc :154 ] CG : final iterations = 10
[cg.cc :155 ] CG : final abs res norm =
3.79472e-11
[cg.cc :156 ] CG : final rel res norm =
7.60075e-07
[cg.cc :121 ] CG : initial res norm =
0.000450258
[cg.cc :154 ] CG : final iterations = 9
[cg.cc :155 ] CG : final abs res norm =
3.91457e-10
[cg.cc :156 ] CG : final rel res norm =
8.69406e-07
[two_cell_evolution.cc :534 ] timestep : Calculating total F, M, C
and P
total F =0.237638, total M=0.237639, total C=113333, total P=74751.3
[two_cell_evolution.cc :548 ] timestep : Visualizing solution at
time 16 (time-step 16)
[two_cell_evolution.cc :515 ] timestep : Solving time step 16
[newton.cc :440 ] Initial res norm : 348.889
[newton.cc :446 ] Initial forcing term : 1.80628e-11
[newton.cc :250 ] Forcing term : 1.80628e-11
[gmres.cc :401 ] GMRES : initial res norm =
348.889
[gmres.cc :546 ] GMRES : final iterations = 25
[gmres.cc :547 ] GMRES : final abs res norm =
2.72166e-09
[gmres.cc :548 ] GMRES : final rel res norm =
7.80095e-12
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 3.33226e-07
[newton.cc :502 ] LinSolver iter : 25
[newton.cc :503 ] LinSolver abs res : 2.72166e-09
[newton.cc :504 ] LinSolver rel res : 7.80095e-12
[newton.cc :513 ] New forcing term : 9.47306e-10
[newton.cc :529 ] Final res norm : 3.33226e-07
Newton 1 ended with residual norm 3.33226e-07 after 1 iterations.
[newton.cc :440 ] Initial res norm : 0.0191273
[newton.cc :446 ] Initial forcing term : 9.47306e-10
[newton.cc :250 ] Forcing term : 9.47306e-10
[gmres.cc :401 ] GMRES : initial res norm =
0.0191273
[gmres.cc :546 ] GMRES : final iterations = 13
[gmres.cc :547 ] GMRES : final abs res norm =
1.26436e-11
[gmres.cc :548 ] GMRES : final rel res norm =
6.61023e-10
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 1.31821e-11
[newton.cc :502 ] LinSolver iter : 13
[newton.cc :503 ] LinSolver abs res : 1.26436e-11
[newton.cc :504 ] LinSolver rel res : 6.61023e-10
[newton.cc :513 ] New forcing term : 2.81564e-11
[newton.cc :529 ] Final res norm : 1.31821e-11
Newton 2 ended with residual norm 1.31821e-11 after 1 iterations.
[two_cell_evolution.cc :521 ] timestep : Calculating cytokine
gradients
[cg.cc :121 ] CG : initial res norm =
4.60989e-05
[cg.cc :154 ] CG : final iterations = 10
[cg.cc :155 ] CG : final abs res norm =
3.59452e-11
[cg.cc :156 ] CG : final rel res norm =
7.79742e-07
[cg.cc :121 ] CG : initial res norm =
0.000324944
[cg.cc :154 ] CG : final iterations = 9
[cg.cc :155 ] CG : final abs res norm =
2.92206e-10
[cg.cc :156 ] CG : final rel res norm =
8.9925e-07
[two_cell_evolution.cc :534 ] timestep : Calculating total F, M, C
and P
total F =0.175646, total M=0.175646, total C=83767.5, total P=55250.9
[two_cell_evolution.cc :548 ] timestep : Visualizing solution at
time 17 (time-step 17)
[two_cell_evolution.cc :515 ] timestep : Solving time step 17
[newton.cc :440 ] Initial res norm : 264.604
[newton.cc :446 ] Initial forcing term : 2.81564e-11
[newton.cc :250 ] Forcing term : 2.81564e-11
[gmres.cc :401 ] GMRES : initial res norm =
264.604
[gmres.cc :546 ] GMRES : final iterations = 24
[gmres.cc :547 ] GMRES : final abs res norm =
5.00523e-09
[gmres.cc :548 ] GMRES : final rel res norm =
1.89159e-11
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 2.27524e-07
[newton.cc :502 ] LinSolver iter : 24
[newton.cc :503 ] LinSolver abs res : 5.00523e-09
[newton.cc :504 ] LinSolver rel res : 1.89159e-11
[newton.cc :513 ] New forcing term : 8.4095e-10
[newton.cc :529 ] Final res norm : 2.27524e-07
Newton 1 ended with residual norm 2.27524e-07 after 1 iterations.
[newton.cc :440 ] Initial res norm : 0.0190453
[newton.cc :446 ] Initial forcing term : 8.4095e-10
[newton.cc :250 ] Forcing term : 8.4095e-10
[gmres.cc :401 ] GMRES : initial res norm =
0.0190453
[gmres.cc :546 ] GMRES : final iterations = 13
[gmres.cc :547 ] GMRES : final abs res norm =
1.27719e-11
[gmres.cc :548 ] GMRES : final rel res norm =
6.70609e-10
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 1.32431e-11
[newton.cc :502 ] LinSolver iter : 13
[newton.cc :503 ] LinSolver abs res : 1.27719e-11
[newton.cc :504 ] LinSolver rel res : 6.70609e-10
[newton.cc :513 ] New forcing term : 2.47372e-11
[newton.cc :529 ] Final res norm : 1.32431e-11
Newton 2 ended with residual norm 1.32431e-11 after 1 iterations.
[two_cell_evolution.cc :521 ] timestep : Calculating cytokine
gradients
[cg.cc :121 ] CG : initial res norm =
4.28048e-05
[cg.cc :154 ] CG : final iterations = 10
[cg.cc :155 ] CG : final abs res norm =
3.58739e-11
[cg.cc :156 ] CG : final rel res norm =
8.38083e-07
[cg.cc :121 ] CG : initial res norm =
0.000234775
[cg.cc :154 ] CG : final iterations = 9
[cg.cc :155 ] CG : final abs res norm =
2.1665e-10
[cg.cc :156 ] CG : final rel res norm =
9.22798e-07
[two_cell_evolution.cc :534 ] timestep : Calculating total F, M, C
and P
total F =0.129825, total M=0.129825, total C=61915.1, total P=40837.7
[two_cell_evolution.cc :548 ] timestep : Visualizing solution at
time 18 (time-step 18)
[two_cell_evolution.cc :515 ] timestep : Solving time step 18
[newton.cc :440 ] Initial res norm : 197.568
[newton.cc :446 ] Initial forcing term : 2.47372e-11
[newton.cc :250 ] Forcing term : 2.47372e-11
[gmres.cc :401 ] GMRES : initial res norm =
197.568
[gmres.cc :546 ] GMRES : final iterations = 24
[gmres.cc :547 ] GMRES : final abs res norm =
3.82902e-09
[gmres.cc :548 ] GMRES : final rel res norm =
1.93807e-11
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 1.7706e-07
[newton.cc :502 ] LinSolver iter : 24
[newton.cc :503 ] LinSolver abs res : 3.82902e-09
[newton.cc :504 ] LinSolver rel res : 1.93807e-11
[newton.cc :513 ] New forcing term : 8.76817e-10
[newton.cc :529 ] Final res norm : 1.7706e-07
Newton 1 ended with residual norm 1.7706e-07 after 1 iterations.
[newton.cc :440 ] Initial res norm : 0.0190168
[newton.cc :446 ] Initial forcing term : 8.76817e-10
[newton.cc :250 ] Forcing term : 8.76817e-10
[gmres.cc :401 ] GMRES : initial res norm =
0.0190168
[gmres.cc :546 ] GMRES : final iterations = 13
[gmres.cc :547 ] GMRES : final abs res norm =
1.20689e-11
[gmres.cc :548 ] GMRES : final rel res norm =
6.34646e-10
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 1.24303e-11
[newton.cc :502 ] LinSolver iter : 13
[newton.cc :503 ] LinSolver abs res : 1.20689e-11
[newton.cc :504 ] LinSolver rel res : 6.34646e-10
[newton.cc :513 ] New forcing term : 1.90022e-11
[newton.cc :529 ] Final res norm : 1.24303e-11
Newton 2 ended with residual norm 1.24303e-11 after 1 iterations.
[two_cell_evolution.cc :521 ] timestep : Calculating cytokine
gradients
[cg.cc :121 ] CG : initial res norm =
3.99237e-05
[cg.cc :154 ] CG : final iterations = 10
[cg.cc :155 ] CG : final abs res norm =
3.53761e-11
[cg.cc :156 ] CG : final rel res norm =
8.86093e-07
[cg.cc :121 ] CG : initial res norm =
0.000169825
[cg.cc :154 ] CG : final iterations = 9
[cg.cc :155 ] CG : final abs res norm =
1.62235e-10
[cg.cc :156 ] CG : final rel res norm =
9.55305e-07
[two_cell_evolution.cc :534 ] timestep : Calculating total F, M, C
and P
total F =0.0959577, total M=0.0959579, total C=45763.4, total P=30184.4
[two_cell_evolution.cc :548 ] timestep : Visualizing solution at
time 19 (time-step 19)
[two_cell_evolution.cc :515 ] timestep : Solving time step 19
[newton.cc :440 ] Initial res norm : 154.419
[newton.cc :446 ] Initial forcing term : 1.90022e-11
[newton.cc :250 ] Forcing term : 1.90022e-11
[gmres.cc :401 ] GMRES : initial res norm =
154.419
[gmres.cc :546 ] GMRES : final iterations = 25
[gmres.cc :547 ] GMRES : final abs res norm =
1.26522e-09
[gmres.cc :548 ] GMRES : final rel res norm =
8.19344e-12
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 1.19294e-07
[newton.cc :502 ] LinSolver iter : 25
[newton.cc :503 ] LinSolver abs res : 1.26522e-09
[newton.cc :504 ] LinSolver rel res : 8.19344e-12
[newton.cc :513 ] New forcing term : 7.6434e-10
[newton.cc :529 ] Final res norm : 1.19294e-07
Newton 1 ended with residual norm 1.19294e-07 after 1 iterations.
[newton.cc :440 ] Initial res norm : 0.0189538
[newton.cc :446 ] Initial forcing term : 7.6434e-10
[newton.cc :250 ] Forcing term : 7.6434e-10
[gmres.cc :401 ] GMRES : initial res norm =
0.0189538
[gmres.cc :546 ] GMRES : final iterations = 13
[gmres.cc :547 ] GMRES : final abs res norm =
1.21031e-11
[gmres.cc :548 ] GMRES : final rel res norm =
6.38559e-10
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 1.23382e-11
[newton.cc :502 ] LinSolver iter : 13
[newton.cc :503 ] LinSolver abs res : 1.21031e-11
[newton.cc :504 ] LinSolver rel res : 6.38559e-10
[newton.cc :513 ] New forcing term : 1.2405e-11
[newton.cc :529 ] Final res norm : 1.23382e-11
Newton 2 ended with residual norm 1.23382e-11 after 1 iterations.
[two_cell_evolution.cc :521 ] timestep : Calculating cytokine
gradients
[cg.cc :121 ] CG : initial res norm =
3.73784e-05
[cg.cc :154 ] CG : final iterations = 10
[cg.cc :155 ] CG : final abs res norm =
3.53009e-11
[cg.cc :156 ] CG : final rel res norm =
9.44419e-07
[cg.cc :121 ] CG : initial res norm =
0.000123142
[cg.cc :154 ] CG : final iterations = 9
[cg.cc :155 ] CG : final abs res norm =
1.22996e-10
[cg.cc :156 ] CG : final rel res norm =
9.98813e-07
[two_cell_evolution.cc :534 ] timestep : Calculating total F, M, C
and P
total F =0.0709253, total M=0.0709254, total C=33825.1, total P=22310.2
[two_cell_evolution.cc :548 ] timestep : Visualizing solution at
time 20 (time-step 20)
[two_cell_evolution.cc :515 ] timestep : Solving time step 20
[newton.cc :440 ] Initial res norm : 118.709
[newton.cc :446 ] Initial forcing term : 1.2405e-11
[newton.cc :250 ] Forcing term : 1.2405e-11
[gmres.cc :401 ] GMRES : initial res norm =
118.709
[gmres.cc :546 ] GMRES : final iterations = 25
[gmres.cc :547 ] GMRES : final abs res norm =
1.01058e-09
[gmres.cc :548 ] GMRES : final rel res norm =
8.51304e-12
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 9.16678e-08
[newton.cc :502 ] LinSolver iter : 25
[newton.cc :503 ] LinSolver abs res : 1.01058e-09
[newton.cc :504 ] LinSolver rel res : 8.51304e-12
[newton.cc :513 ] New forcing term : 7.63691e-10
[newton.cc :529 ] Final res norm : 9.16678e-08
Newton 1 ended with residual norm 9.16678e-08 after 1 iterations.
[newton.cc :440 ] Initial res norm : 0.0189198
[newton.cc :446 ] Initial forcing term : 7.63691e-10
[newton.cc :250 ] Forcing term : 7.63691e-10
[gmres.cc :401 ] GMRES : initial res norm =
0.0189198
[gmres.cc :546 ] GMRES : final iterations = 13
[gmres.cc :547 ] GMRES : final abs res norm =
1.1711e-11
[gmres.cc :548 ] GMRES : final rel res norm =
6.1898e-10
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 1.18599e-11
[newton.cc :502 ] LinSolver iter : 13
[newton.cc :503 ] LinSolver abs res : 1.1711e-11
[newton.cc :504 ] LinSolver rel res : 6.1898e-10
[newton.cc :513 ] New forcing term : 7.87122e-12
[newton.cc :529 ] Final res norm : 1.18599e-11
Newton 2 ended with residual norm 1.18599e-11 after 1 iterations.
[two_cell_evolution.cc :521 ] timestep : Calculating cytokine
gradients
[cg.cc :121 ] CG : initial res norm =
3.51122e-05
[cg.cc :154 ] CG : final iterations = 11
[cg.cc :155 ] CG : final abs res norm =
3.40197e-11
[cg.cc :156 ] CG : final rel res norm =
9.68883e-07
[cg.cc :121 ] CG : initial res norm =
8.95736e-05
[cg.cc :154 ] CG : final iterations = 10
[cg.cc :155 ] CG : final abs res norm =
3.85929e-11
[cg.cc :156 ] CG : final rel res norm =
4.30852e-07
[two_cell_evolution.cc :534 ] timestep : Calculating total F, M, C
and P
total F =0.052423, total M=0.0524231, total C=25001.2, total P=16490.1
[two_cell_evolution.cc :548 ] timestep : Visualizing solution at
time 21 (time-step 21)
[two_cell_evolution.cc :515 ] timestep : Solving time step 21
[newton.cc :440 ] Initial res norm : 98.0628
[newton.cc :446 ] Initial forcing term : 7.87122e-12
[newton.cc :250 ] Forcing term : 7.87122e-12
[gmres.cc :401 ] GMRES : initial res norm =
98.0628
[gmres.cc :546 ] GMRES : final iterations = 26
[gmres.cc :547 ] GMRES : final abs res norm =
3.16905e-10
[gmres.cc :548 ] GMRES : final rel res norm =
3.23166e-12
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 6.57031e-08
[newton.cc :502 ] LinSolver iter : 26
[newton.cc :503 ] LinSolver abs res : 3.16905e-10
[newton.cc :504 ] LinSolver rel res : 3.23166e-12
[newton.cc :513 ] New forcing term : 6.66779e-10
[newton.cc :529 ] Final res norm : 6.57031e-08
Newton 1 ended with residual norm 6.57031e-08 after 1 iterations.
[newton.cc :440 ] Initial res norm : 0.0188671
[newton.cc :446 ] Initial forcing term : 6.66779e-10
[newton.cc :250 ] Forcing term : 6.66779e-10
[gmres.cc :401 ] GMRES : initial res norm =
0.0188671
[gmres.cc :546 ] GMRES : final iterations = 13
[gmres.cc :547 ] GMRES : final abs res norm =
1.16879e-11
[gmres.cc :548 ] GMRES : final rel res norm =
6.19487e-10
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 1.17755e-11
[newton.cc :502 ] LinSolver iter : 13
[newton.cc :503 ] LinSolver abs res : 1.16879e-11
[newton.cc :504 ] LinSolver rel res : 6.19487e-10
[newton.cc :513 ] New forcing term : 4.64193e-12
[newton.cc :529 ] Final res norm : 1.17755e-11
Newton 2 ended with residual norm 1.17755e-11 after 1 iterations.
[two_cell_evolution.cc :521 ] timestep : Calculating cytokine
gradients
[cg.cc :121 ] CG : initial res norm =
3.30818e-05
[cg.cc :154 ] CG : final iterations = 12
[cg.cc :155 ] CG : final abs res norm =
1.64505e-11
[cg.cc :156 ] CG : final rel res norm =
4.97266e-07
[cg.cc :121 ] CG : initial res norm =
6.55618e-05
[cg.cc :154 ] CG : final iterations = 10
[cg.cc :155 ] CG : final abs res norm =
5.69723e-11
[cg.cc :156 ] CG : final rel res norm =
8.68987e-07
[two_cell_evolution.cc :534 ] timestep : Calculating total F, M, C
and P
total F =0.0387474, total M=0.0387475, total C=18479.1, total P=12188.4
[two_cell_evolution.cc :548 ] timestep : Visualizing solution at
time 22 (time-step 22)
[two_cell_evolution.cc :515 ] timestep : Solving time step 22
[newton.cc :440 ] Initial res norm : 79.8827
[newton.cc :446 ] Initial forcing term : 4.64193e-12
[newton.cc :250 ] Forcing term : 4.64193e-12
[gmres.cc :401 ] GMRES : initial res norm =
79.8827
[gmres.cc :546 ] GMRES : final iterations = 26
[gmres.cc :547 ] GMRES : final abs res norm =
2.67851e-10
[gmres.cc :548 ] GMRES : final rel res norm =
3.35306e-12
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 5.457e-08
[newton.cc :502 ] LinSolver iter : 26
[newton.cc :503 ] LinSolver abs res : 2.67851e-10
[newton.cc :504 ] LinSolver rel res : 3.35306e-12
[newton.cc :513 ] New forcing term : 6.79774e-10
[newton.cc :529 ] Final res norm : 5.457e-08
Newton 1 ended with residual norm 5.457e-08 after 1 iterations.
[newton.cc :440 ] Initial res norm : 0.0188302
[newton.cc :446 ] Initial forcing term : 6.79774e-10
[newton.cc :250 ] Forcing term : 6.79774e-10
[gmres.cc :401 ] GMRES : initial res norm =
0.0188302
[gmres.cc :546 ] GMRES : final iterations = 13
[gmres.cc :547 ] GMRES : final abs res norm =
1.14454e-11
[gmres.cc :548 ] GMRES : final rel res norm =
6.07822e-10
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 1.14967e-11
[newton.cc :502 ] LinSolver iter : 13
[newton.cc :503 ] LinSolver abs res : 1.14454e-11
[newton.cc :504 ] LinSolver rel res : 6.07822e-10
[newton.cc :513 ] New forcing term : 2.72416e-12
[newton.cc :529 ] Final res norm : 1.14967e-11
Newton 2 ended with residual norm 1.14967e-11 after 1 iterations.
[two_cell_evolution.cc :521 ] timestep : Calculating cytokine
gradients
[cg.cc :121 ] CG : initial res norm =
3.12528e-05
[cg.cc :154 ] CG : final iterations = 12
[cg.cc :155 ] CG : final abs res norm =
1.62564e-11
[cg.cc :156 ] CG : final rel res norm =
5.20159e-07
[cg.cc :121 ] CG : initial res norm =
4.8409e-05
[cg.cc :154 ] CG : final iterations = 10
[cg.cc :155 ] CG : final abs res norm =
1.77506e-11
[cg.cc :156 ] CG : final rel res norm =
3.66679e-07
[two_cell_evolution.cc :534 ] timestep : Calculating total F, M, C
and P
total F =0.0286394, total M=0.0286395, total C=13658.5, total P=9008.78
[two_cell_evolution.cc :548 ] timestep : Visualizing solution at
time 23 (time-step 23)
[two_cell_evolution.cc :515 ] timestep : Solving time step 23
[newton.cc :440 ] Initial res norm : 70.8683
[newton.cc :446 ] Initial forcing term : 2.72416e-12
[newton.cc :250 ] Forcing term : 2.72416e-12
[gmres.cc :401 ] GMRES : initial res norm =
70.8683
[gmres.cc :546 ] GMRES : final iterations = 27
[gmres.cc :547 ] GMRES : final abs res norm =
7.91744e-11
[gmres.cc :548 ] GMRES : final rel res norm =
1.1172e-12
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 4.49353e-08
[newton.cc :502 ] LinSolver iter : 27
[newton.cc :503 ] LinSolver abs res : 7.91744e-11
[newton.cc :504 ] LinSolver rel res : 1.1172e-12
[newton.cc :513 ] New forcing term : 6.32951e-10
[newton.cc :529 ] Final res norm : 4.49353e-08
Newton 1 ended with residual norm 4.49353e-08 after 1 iterations.
[newton.cc :440 ] Initial res norm : 0.0187835
[newton.cc :446 ] Initial forcing term : 6.32951e-10
[newton.cc :250 ] Forcing term : 6.32951e-10
[gmres.cc :401 ] GMRES : initial res norm =
0.0187835
[gmres.cc :546 ] GMRES : final iterations = 13
[gmres.cc :547 ] GMRES : final abs res norm =
1.13794e-11
[gmres.cc :548 ] GMRES : final rel res norm =
6.05818e-10
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 1.14083e-11
[newton.cc :502 ] LinSolver iter : 13
[newton.cc :503 ] LinSolver abs res : 1.13794e-11
[newton.cc :504 ] LinSolver rel res : 6.05818e-10
[newton.cc :513 ] New forcing term : 1.5403e-12
[newton.cc :529 ] Final res norm : 1.14083e-11
Newton 2 ended with residual norm 1.14083e-11 after 1 iterations.
[two_cell_evolution.cc :521 ] timestep : Calculating cytokine
gradients
[cg.cc :121 ] CG : initial res norm =
2.95972e-05
[cg.cc :154 ] CG : final iterations = 12
[cg.cc :155 ] CG : final abs res norm =
1.57334e-11
[cg.cc :156 ] CG : final rel res norm =
5.31583e-07
[cg.cc :121 ] CG : initial res norm =
3.62995e-05
[cg.cc :154 ] CG : final iterations = 11
[cg.cc :155 ] CG : final abs res norm =
3.51602e-11
[cg.cc :156 ] CG : final rel res norm =
9.68614e-07
[two_cell_evolution.cc :534 ] timestep : Calculating total F, M, C
and P
total F =0.0211683, total M=0.0211683, total C=10095.4, total P=6658.67
[two_cell_evolution.cc :548 ] timestep : Visualizing solution at
time 24 (time-step 24)
[two_cell_evolution.cc :515 ] timestep : Solving time step 24
[newton.cc :440 ] Initial res norm : 61.9659
[newton.cc :446 ] Initial forcing term : 1.5403e-12
[newton.cc :250 ] Forcing term : 1.5403e-12
[gmres.cc :401 ] GMRES : initial res norm =
61.9659
[gmres.cc :546 ] GMRES : final iterations = 27
[gmres.cc :547 ] GMRES : final abs res norm =
6.81089e-11
[gmres.cc :548 ] GMRES : final rel res norm =
1.09913e-12
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 2.88408e-08
[newton.cc :502 ] LinSolver iter : 27
[newton.cc :503 ] LinSolver abs res : 6.81089e-11
[newton.cc :504 ] LinSolver rel res : 1.09913e-12
[newton.cc :513 ] New forcing term : 4.64331e-10
[newton.cc :529 ] Final res norm : 2.88408e-08
Newton 1 ended with residual norm 2.88408e-08 after 1 iterations.
[newton.cc :440 ] Initial res norm : 0.0187457
[newton.cc :446 ] Initial forcing term : 4.64331e-10
[newton.cc :250 ] Forcing term : 4.64331e-10
[gmres.cc :401 ] GMRES : initial res norm =
0.0187457
[gmres.cc :546 ] GMRES : final iterations = 14
[gmres.cc :547 ] GMRES : final abs res norm =
2.81005e-12
[gmres.cc :548 ] GMRES : final rel res norm =
1.49903e-10
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 2.87601e-12
[newton.cc :502 ] LinSolver iter : 14
[newton.cc :503 ] LinSolver abs res : 2.81005e-12
[newton.cc :504 ] LinSolver rel res : 1.49903e-10
[newton.cc :513 ] New forcing term : 3.51881e-12
[newton.cc :529 ] Final res norm : 2.87601e-12
Newton 2 ended with residual norm 2.87601e-12 after 1 iterations.
[two_cell_evolution.cc :521 ] timestep : Calculating cytokine
gradients
[cg.cc :121 ] CG : initial res norm =
2.80922e-05
[cg.cc :154 ] CG : final iterations = 12
[cg.cc :155 ] CG : final abs res norm =
1.52664e-11
[cg.cc :156 ] CG : final rel res norm =
5.43439e-07
[cg.cc :121 ] CG : initial res norm =
2.77972e-05
[cg.cc :154 ] CG : final iterations = 10
[cg.cc :155 ] CG : final abs res norm =
1.57126e-11
[cg.cc :156 ] CG : final rel res norm =
5.65258e-07
[two_cell_evolution.cc :534 ] timestep : Calculating total F, M, C
and P
total F =0.0156461, total M=0.0156461, total C=7461.81, total P=4921.62
[two_cell_evolution.cc :548 ] timestep : Visualizing solution at
time 25 (time-step 25)
[two_cell_evolution.cc :515 ] timestep : Solving time step 25
[newton.cc :440 ] Initial res norm : 58.1288
[newton.cc :446 ] Initial forcing term : 3.51881e-12
[newton.cc :250 ] Forcing term : 3.51881e-12
[gmres.cc :401 ] GMRES : initial res norm =
58.1288
[gmres.cc :546 ] GMRES : final iterations = 26
[gmres.cc :547 ] GMRES : final abs res norm =
1.27784e-10
[gmres.cc :548 ] GMRES : final rel res norm =
2.19828e-12
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 2.37745e-08
[newton.cc :502 ] LinSolver iter : 26
[newton.cc :503 ] LinSolver abs res : 1.27784e-10
[newton.cc :504 ] LinSolver rel res : 2.19828e-12
[newton.cc :513 ] New forcing term : 4.06799e-10
[newton.cc :529 ] Final res norm : 2.37745e-08
Newton 1 ended with residual norm 2.37745e-08 after 1 iterations.
[newton.cc :440 ] Initial res norm : 0.0187028
[newton.cc :446 ] Initial forcing term : 4.06799e-10
[newton.cc :250 ] Forcing term : 4.06799e-10
[gmres.cc :401 ] GMRES : initial res norm =
0.0187028
[gmres.cc :546 ] GMRES : final iterations = 14
[gmres.cc :547 ] GMRES : final abs res norm =
2.77933e-12
[gmres.cc :548 ] GMRES : final rel res norm =
1.48605e-10
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 2.81623e-12
[newton.cc :502 ] LinSolver iter : 14
[newton.cc :503 ] LinSolver abs res : 2.77933e-12
[newton.cc :504 ] LinSolver rel res : 1.48605e-10
[newton.cc :513 ] New forcing term : 1.97347e-12
[newton.cc :529 ] Final res norm : 2.81623e-12
Newton 2 ended with residual norm 2.81623e-12 after 1 iterations.
[two_cell_evolution.cc :521 ] timestep : Calculating cytokine
gradients
[cg.cc :121 ] CG : initial res norm =
2.67188e-05
[cg.cc :154 ] CG : final iterations = 12
[cg.cc :155 ] CG : final abs res norm =
1.48485e-11
[cg.cc :156 ] CG : final rel res norm =
5.55733e-07
[cg.cc :121 ] CG : initial res norm =
2.19578e-05
[cg.cc :154 ] CG : final iterations = 11
[cg.cc :155 ] CG : final abs res norm =
2.18853e-11
[cg.cc :156 ] CG : final rel res norm =
9.96697e-07
[two_cell_evolution.cc :534 ] timestep : Calculating total F, M, C
and P
total F =0.0115645, total M=0.0115645, total C=5515.25, total P=3637.72
[two_cell_evolution.cc :548 ] timestep : Visualizing solution at
time 26 (time-step 26)
[two_cell_evolution.cc :515 ] timestep : Solving time step 26
[newton.cc :440 ] Initial res norm : 53.5997
[newton.cc :446 ] Initial forcing term : 1.97347e-12
[newton.cc :250 ] Forcing term : 1.97347e-12
[gmres.cc :401 ] GMRES : initial res norm =
53.5997
[gmres.cc :546 ] GMRES : final iterations = 27
[gmres.cc :547 ] GMRES : final abs res norm =
4.43202e-11
[gmres.cc :548 ] GMRES : final rel res norm =
8.26874e-13
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 1.59792e-08
[newton.cc :502 ] LinSolver iter : 27
[newton.cc :503 ] LinSolver abs res : 4.43202e-11
[newton.cc :504 ] LinSolver rel res : 8.26874e-13
[newton.cc :513 ] New forcing term : 2.97294e-10
[newton.cc :529 ] Final res norm : 1.59792e-08
Newton 1 ended with residual norm 1.59792e-08 after 1 iterations.
[newton.cc :440 ] Initial res norm : 0.018665
[newton.cc :446 ] Initial forcing term : 2.97294e-10
[newton.cc :250 ] Forcing term : 2.97294e-10
[gmres.cc :401 ] GMRES : initial res norm =
0.018665
[gmres.cc :546 ] GMRES : final iterations = 14
[gmres.cc :547 ] GMRES : final abs res norm =
2.74236e-12
[gmres.cc :548 ] GMRES : final rel res norm =
1.46925e-10
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 2.76329e-12
[newton.cc :502 ] LinSolver iter : 14
[newton.cc :503 ] LinSolver abs res : 2.74236e-12
[newton.cc :504 ] LinSolver rel res : 1.46925e-10
[newton.cc :513 ] New forcing term : 1.1215e-12
[newton.cc :529 ] Final res norm : 2.76329e-12
Newton 2 ended with residual norm 2.76329e-12 after 1 iterations.
[two_cell_evolution.cc :521 ] timestep : Calculating cytokine
gradients
[cg.cc :121 ] CG : initial res norm =
2.54608e-05
[cg.cc :154 ] CG : final iterations = 12
[cg.cc :155 ] CG : final abs res norm =
1.44724e-11
[cg.cc :156 ] CG : final rel res norm =
5.6842e-07
[cg.cc :121 ] CG : initial res norm =
1.79734e-05
[cg.cc :154 ] CG : final iterations = 12
[cg.cc :155 ] CG : final abs res norm =
1.04791e-11
[cg.cc :156 ] CG : final rel res norm =
5.83033e-07
[two_cell_evolution.cc :534 ] timestep : Calculating total F, M, C
and P
total F =0.00854769, total M=0.0085477, total C=4076.49, total P=2688.75
[two_cell_evolution.cc :548 ] timestep : Visualizing solution at
time 27 (time-step 27)
[two_cell_evolution.cc :515 ] timestep : Solving time step 27
[newton.cc :440 ] Initial res norm : 51.6752
[newton.cc :446 ] Initial forcing term : 1.1215e-12
[newton.cc :250 ] Forcing term : 1.1215e-12
[gmres.cc :401 ] GMRES : initial res norm =
51.6752
[gmres.cc :546 ] GMRES : final iterations = 27
[gmres.cc :547 ] GMRES : final abs res norm =
3.35957e-11
[gmres.cc :548 ] GMRES : final rel res norm =
6.50133e-13
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 1.26396e-08
[newton.cc :502 ] LinSolver iter : 27
[newton.cc :503 ] LinSolver abs res : 3.35957e-11
[newton.cc :504 ] LinSolver rel res : 6.50133e-13
[newton.cc :513 ] New forcing term : 2.43948e-10
[newton.cc :529 ] Final res norm : 1.26396e-08
Newton 1 ended with residual norm 1.26396e-08 after 1 iterations.
[newton.cc :440 ] Initial res norm : 0.0186247
[newton.cc :446 ] Initial forcing term : 2.43948e-10
[newton.cc :250 ] Forcing term : 2.43948e-10
[gmres.cc :401 ] GMRES : initial res norm =
0.0186247
[gmres.cc :546 ] GMRES : final iterations = 14
[gmres.cc :547 ] GMRES : final abs res norm =
2.70866e-12
[gmres.cc :548 ] GMRES : final rel res norm =
1.45434e-10
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 2.72038e-12
[newton.cc :502 ] LinSolver iter : 14
[newton.cc :503 ] LinSolver abs res : 2.70866e-12
[newton.cc :504 ] LinSolver rel res : 1.45434e-10
[newton.cc :513 ] New forcing term : 6.29322e-13
[newton.cc :529 ] Final res norm : 2.72038e-12
Newton 2 ended with residual norm 2.72038e-12 after 1 iterations.
[two_cell_evolution.cc :521 ] timestep : Calculating cytokine
gradients
[cg.cc :121 ] CG : initial res norm =
2.43047e-05
[cg.cc :154 ] CG : final iterations = 12
[cg.cc :155 ] CG : final abs res norm =
1.41324e-11
[cg.cc :156 ] CG : final rel res norm =
5.81466e-07
[cg.cc :121 ] CG : initial res norm =
1.53173e-05
[cg.cc :154 ] CG : final iterations = 12
[cg.cc :155 ] CG : final abs res norm =
7.20471e-12
[cg.cc :156 ] CG : final rel res norm =
4.70366e-07
[two_cell_evolution.cc :534 ] timestep : Calculating total F, M, C
and P
total F =0.00631785, total M=0.00631786, total C=3013.06, total P=1987.34
[two_cell_evolution.cc :548 ] timestep : Visualizing solution at
time 28 (time-step 28)
[two_cell_evolution.cc :515 ] timestep : Solving time step 28
[newton.cc :440 ] Initial res norm : 49.0474
[newton.cc :446 ] Initial forcing term : 6.29322e-13
[newton.cc :250 ] Forcing term : 6.29322e-13
[gmres.cc :401 ] GMRES : initial res norm =
49.0474
[gmres.cc :546 ] GMRES : final iterations = 27
[gmres.cc :547 ] GMRES : final abs res norm =
2.87399e-11
[gmres.cc :548 ] GMRES : final rel res norm =
5.85962e-13
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 8.96962e-09
[newton.cc :502 ] LinSolver iter : 27
[newton.cc :503 ] LinSolver abs res : 2.87399e-11
[newton.cc :504 ] LinSolver rel res : 5.85962e-13
[newton.cc :513 ] New forcing term : 1.82291e-10
[newton.cc :529 ] Final res norm : 8.96962e-09
Newton 1 ended with residual norm 8.96962e-09 after 1 iterations.
[newton.cc :440 ] Initial res norm : 0.0185874
[newton.cc :446 ] Initial forcing term : 1.82291e-10
[newton.cc :250 ] Forcing term : 1.82291e-10
[gmres.cc :401 ] GMRES : initial res norm =
0.0185874
[gmres.cc :546 ] GMRES : final iterations = 14
[gmres.cc :547 ] GMRES : final abs res norm =
2.67217e-12
[gmres.cc :548 ] GMRES : final rel res norm =
1.43763e-10
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 2.679e-12
[newton.cc :502 ] LinSolver iter : 14
[newton.cc :503 ] LinSolver abs res : 2.67217e-12
[newton.cc :504 ] LinSolver rel res : 1.43763e-10
[newton.cc :513 ] New forcing term : 3.6705e-13
[newton.cc :529 ] Final res norm : 2.679e-12
Newton 2 ended with residual norm 2.679e-12 after 1 iterations.
[two_cell_evolution.cc :521 ] timestep : Calculating cytokine
gradients
[cg.cc :121 ] CG : initial res norm =
2.32391e-05
[cg.cc :154 ] CG : final iterations = 12
[cg.cc :155 ] CG : final abs res norm =
1.38238e-11
[cg.cc :156 ] CG : final rel res norm =
5.9485e-07
[cg.cc :121 ] CG : initial res norm =
1.3518e-05
[cg.cc :154 ] CG : final iterations = 12
[cg.cc :155 ] CG : final abs res norm =
9.50814e-12
[cg.cc :156 ] CG : final rel res norm =
7.0337e-07
[two_cell_evolution.cc :534 ] timestep : Calculating total F, M, C
and P
total F =0.00466972, total M=0.00466973, total C=2227.04, total P=1468.9
[two_cell_evolution.cc :548 ] timestep : Visualizing solution at
time 29 (time-step 29)
[two_cell_evolution.cc :515 ] timestep : Solving time step 29
[newton.cc :440 ] Initial res norm : 47.7524
[newton.cc :446 ] Initial forcing term : 3.6705e-13
[newton.cc :250 ] Forcing term : 3.6705e-13
[gmres.cc :401 ] GMRES : initial res norm =
47.7524
[gmres.cc :546 ] GMRES : final iterations = 28
[gmres.cc :547 ] GMRES : final abs res norm =
8.87999e-12
[gmres.cc :548 ] GMRES : final rel res norm =
1.85959e-13
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 6.75056e-09
[newton.cc :502 ] LinSolver iter : 28
[newton.cc :503 ] LinSolver abs res : 8.87999e-12
[newton.cc :504 ] LinSolver rel res : 1.85959e-13
[newton.cc :513 ] New forcing term : 1.4118e-10
[newton.cc :529 ] Final res norm : 6.75056e-09
Newton 1 ended with residual norm 6.75056e-09 after 1 iterations.
[newton.cc :440 ] Initial res norm : 0.018549
[newton.cc :446 ] Initial forcing term : 1.4118e-10
[newton.cc :250 ] Forcing term : 1.4118e-10
[gmres.cc :401 ] GMRES : initial res norm =
0.018549
[gmres.cc :546 ] GMRES : final iterations = 15
[gmres.cc :547 ] GMRES : final abs res norm =
6.54675e-13
[gmres.cc :548 ] GMRES : final rel res norm =
3.52944e-11
[newton.cc :496 ] :
==================================
[newton.cc :497 ] Iteration : 1
[newton.cc :498 ] Abs res norm : 6.70531e-13
[newton.cc :502 ] LinSolver iter : 15
[newton.cc :503 ] LinSolver abs res : 6.54675e-13
[newton.cc :504 ] LinSolver rel res : 3.52944e-11
[newton.cc :513 ] New forcing term : 8.5482e-13
[newton.cc :529 ] Final res norm : 6.70531e-13
Newton 2 ended with residual norm 6.70531e-13 after 1 iterations.
[two_cell_evolution.cc :521 ] timestep : Calculating cytokine
gradients
[cg.cc :121 ] CG : initial res norm =
2.22541e-05
[cg.cc :154 ] CG : final iterations = 12
[cg.cc :155 ] CG : final abs res norm =
1.35429e-11
[cg.cc :156 ] CG : final rel res norm =
6.08558e-07
[cg.cc :121 ] CG : initial res norm =
1.22949e-05
[cg.cc :154 ] CG : final iterations = 12
[cg.cc :155 ] CG : final abs res norm =
7.06027e-12
[cg.cc :156 ] CG : final rel res norm =
5.74243e-07
[two_cell_evolution.cc :534 ] timestep : Calculating total F, M, C
and P
 total F =0.00345153, total M=0.00345154, total C=1646.08, total P=1085.71
[two_cell_evolution.cc :548 ] timestep : Visualizing solution at
time 30 (time-step 30)