You are on page 1of 13

EARTH SURFACE PROCESSES AND LANDFORMS

Earth Surf. Process. Landforms 41, 130–142 (2016)


© 2016 The Authors. Earth Surface Processes and Landforms published by John Wiley & Sons Ltd.
Published online 4 November 2015 in Wiley Online Library
(wileyonlinelibrary.com) DOI: 10.1002/esp.3831

Tools for gauging the capacity of salmon spawning


substrates
Brandon T. Overstreet,1* Clifford S. Riebe,2* John K. Wooster,3 Leonard S. Sklar4 and Dino Bellugi5
1
Department of Geography, University of Wyoming, Laramie, WY, USA
2
Department of Geology and Geophysics, University of Wyoming, Laramie, WY, USA
3
NOAA – Fisheries, Habitat Conservation Division, Santa Rosa, CA, USA
4
Department of Earth and Climate Sciences, San Francisco State University, San Francisco, CA, USA
5
Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA

Received 19 January 2015; Revised 29 July 2015; Accepted 18 August 2015

*Correspondence to: Brandon T. Overstreet, Department of Geography, University of Wyoming, Laramie, WY, USA. E-mail: boverstr@uwyo.edu or Clifford S. Riebe,
Department of Geology and Geophysics, University of Wyoming, Laramie, WY, USA. E-mail: criebe@uwyo.edu
This is an open access article under the terms of the Creative Commons Attribution-NonCommercial License, which permits use, distribution and reproduction
in any medium, provided the original work is properly cited and is not used for commercial purposes.

ABSTRACT: We present a set of river management tools based on a recently developed method for estimating the amount of
salmon spawning habitat in coarse-bedded rivers. The method, which was developed from a mechanistic model of redd building
by female salmon, combines empirical relationships between fish length, redd area, and the sizes of particles moved by fish during
spawning. Model inputs are the grain-size indices D50 and D84 and an estimate of female fish length, which is used to predict the size
of the redd that they will build and the size of the largest particle that they can move on the bed. Outputs include predictions of the
fraction of the bed that the fish can use for redd building and the number of redds that they can build within the useable area. We cast
the model into easy-to-use look-up tables, charts, an Excel worksheet, a JavaScript web applet, and a MATLAB user interface. We explain
how these tools can be used in a new, mechanistic approach to assessing spawning substrates and optimizing gravel augmentation
projects in coarse-bedded rivers. © 2016 The Authors. Earth Surface Processes and Landforms published by John Wiley & Sons Ltd.
KEYWORDS: river restoration; Pacific salmon; salmon spawning habitat; fluvial geomorphology; aquatic ecology

Introduction confer benefits to restoration, the tools that are developed must
be both accessible to restoration managers and practical to use in
Salmon populations are in decline throughout much of their field settings (Bernhardt et al., 2007; Beechie and Snover, 2014).
historical range, reflecting natural and human-induced changes In a recent study, we developed a new understanding of how
in aquatic food webs and habitats, including degradation of the amount of salmon spawning habitat in coarse riverbeds
riverbed sediments where salmon spawn (e.g. Nehlsen et al., depends on grain size and fish length (Riebe et al., 2014). These
1991; Yoshiyama et al., 1998; Carlson and Satterthwaite, 2011). findings, which are based on empirical relationships between
To reverse losses in salmon populations, and thus maintain the fish length, redd area, and the size of the largest particles that
economic, cultural, and ecosystem services that salmon provide, fish can move, provide a scientific basis for designing spawning
river managers spend millions of dollars every year on restoring substrate restoration projects and monitoring their benefits over
salmon spawning habitat (e.g. Kondolf et al., 2007). For example, time. However, to be useful in restoration, our findings must
in 2013 alone, the United States Bureau of Reclamation first be translated into practical tools and made available to
budgeted over $600,000 (USD) for improving spawning habitat the managers who might use them.
as part of the Central Valley Project Improvement Act (USBR Here we present a set of tools that managers can readily use to
and USFWS, 2014), which covers just a few of the US rivers gauge the amount of salmon spawning habitat in coarse-bedded
targeted for habitat restoration that year. Despite expenditures rivers. We begin by summarizing the conceptual and mathema-
such as these, the benefits of restoration have remained unclear, tical basis of the approach. We then describe how we encoded
in part because of poor communication between scientists and the math into a series of easy-to-use look-up charts and tables.
managers (Wohl et al., 2005; Bernhardt et al., 2007). To over- We also present computer-based applications of the approach,
come this limitation, scientists must develop tools that address including an Excel worksheet, a JavaScript web applet, and a
the questions that managers ask when designing and monitoring MATLAB user interface. This comprehensive set of tools, inclu-
restoration projects (Bernhardt et al., 2005, 2007; Wohl et al., ding charts and software, is publically available in the main
2005; Beechie and Snover, 2014). Moreover, for the science to article, in Supplementary Material, and online. We discuss
TOOLS FOR GAUGING THE CAPACITY OF SALMON SPAWNING SUBSTRATES 131

how managers can use these tools as part of a new, mechanistic threshold size that differentiates what fish can and cannot move.
approach to assessing salmon spawning substrates and to When the median particle size on the bed (D50) and DT are both
designing cost-effective spawning habitat restoration projects. constant, coverage by immovable particles increases with increas-
ing variance in the grain-size distribution (Figure 1B), as reflected
in increasing D84 (i.e. the 84th percentile of grain diameters). As
coverage by immovable particles increases, less of the bed is suit-
A New Approach to Assessing Salmon able for redd building, leading to a decrease in the number of
Spawning Substrates redds that salmon can build per unit area of bed. Henceforth,
we use the term “spawning capacity” and the notation NREDDS
Particle sizes and redd building to refer to the maximum number of redds per unit area that a sub-
strate can physically accommodate for a species of interest. As we
Grain size can limit spawning by preventing redd construction if show in sections that follow, NREDDS depends on the grain-size
particles are too big for female fish to move and thus use during distribution of the bed, the size of the largest particle that fish
redd building (Kondolf, 1988; Kondolf and Wolman, 1993; Ligon can move, and the size of the redds they build.
et al., 1995; Kondolf, 2000; Riebe et al., 2014). Female salmon
construct redds by turning on their sides, swatting at the bed with
their tails, and thus inducing lift forces that excavate particles from Predicting the fractional coverage of movable
the bed surface (Burner, 1951). In coarse-bedded rivers, some par-
ticles may be too big for fish to move, depending on the magni-
particles
tude of the lift forces that the fish can generate with its tail. If the
If the size of the largest movable particle is known, the fractional
bed harbours just a few of these immovable particles, they may
coverage of the bed by movable particles can be estimated from
not hinder spawning because salmon may be able to simply build
the bed-surface grain-size distribution by simply integrating it from
their redds around them (Quinn et al., 1995). However, as immov-
zero to DT, and thus quantifying the non-shaded area under the
able particles become more concentrated, the area of the bed that
curve in Figure 1B (Riebe et al., 2014). Although salmonid
can accommodate redd building decreases and should be roughly spawning substrates have been studied for decades (Burner,
equal to the total area of the bed minus the area occupied by par- 1951; Chambers et al., 1955; McNeil and Anhell, 1964; Orcutt
ticles that are too big to move. This relationship is illustrated con- et al., 1968; Crisp and Carling, 1989; Bjornn and Reiser, 1991;
ceptually with bed-surface grain-size distributions in Figure 1. For Kondolf and Wolman, 1993; Kondolf, 2000), much of the work fo-
each of the two distributions in Figure 1B, the shaded area under cused on understanding how fine sediment degrades salmon
the curve corresponds to the fraction of the total bed-surface area spawning habitat by influencing fluvial scour (May et al., 2009),
that is covered by particles with diameters bigger than DT, the preventing delivery of life-sustaining oxygen to eggs (McNeil
and Anhell, 1964; Chapman, 1988; Greig et al., 2005), and
entombing fry (Phillips et al., 1975). Meanwhile, the upper
particle-size limits on redd building in coarse-bedded rivers have
rarely been quantified (Kondolf, 1988; Kondolf and Wolman,
1993). Moreover, the relationship between fish length and DT
had not been quantified until our own recent study of redd build-
ing by Chinook, sockeye, and pink salmon (Oncorhynchus
tshawytscha, O. nerka, and O. gorbuscha), three different-sized
species of Pacific salmon (Riebe et al., 2014). According to data
from 73 redds examined in that work, the intermediate axis diam-
eter of the largest particle moved increased systematically with fish
length (L), in a power-law relationship expressed in Equation (1).

D T ¼ 115ðL=600Þ0:62 (1)

Here, DT and L are both expressed in millimetres, and the constant


in the denominator is a reference fish length (600 mm); when L is
equal to it, DT is equal to the power-law intercept (115 mm).
Equation (1) assumes that the intermediate-axis diameters of
the largest particles moved in redds can be used as a proxy for
DT (Riebe et al., 2014).
When applied at the reach scale (e.g. over hundreds of square
metres of spawning habitat) Equation (1) can be used to divide the
riverbed into the fraction of grains on the surface that fish of a
particular size can move and the fraction they cannot. All that
is needed is an estimate of the bed-surface grain-size distribution,
which can be readily quantified in a grid-based, Wolman-style
Figure 1. Relationship between grain-size distribution, threshold parti- pebble count (Wolman, 1954; Bunte and Abt, 2001b). In these
cle size, and area of the bed covered by particles that are too big for fish pebble counts, the frequency of a particular-sized particle repre-
to move. (a) Immovable particles on the bed limit ability to construct redds
sents its fractional coverage on the bed (Wolman, 1954;
by decreasing the amount of area useable for redd building. For each dis-
Kellerhals and Bray, 1971; Bunte and Abt, 2001b). Hence, the
tribution in (b), the shaded area under the curve is the fractional coverage
by particles bigger than DT, illustrating how usable spawning area
fractional area of the bed that the fish can move (FM) can be quan-
changes with D84. As D84 increases for a given D50, the amount of usable tified graphically from the cumulative distribution function (CDF)
substrate decreases, because a greater fraction of the bed is covered by of grain size by simply reading the value of the CDF that corre-
particles with diameters greater than DT. This figure is available in colour sponds to DT (Figure 2; after Riebe et al., 2014). If the full grain-
online at wileyonlinelibrary.com/journal/espl size distribution is not available, but D50 and D84 are known,

© 2016 The Authors. Earth Surface Processes and Landforms published by John Wiley & Sons Ltd. Earth Surf. Process. Landforms, Vol. 41, 130–142 (2016)
132 B. T. OVERSTREET ET AL.

data in many instances although grain-size measurement


methods and data quality should always be carefully assessed.
Moreover, the need for just three readily measured variables
and the fairly simple form of Equation (4) make it easier to apply
than the graphical approach. Nevertheless it is important to
quantify the scale of typical errors introduced by using Equation
(4) instead of the graphical approach. We did so here using
grain-size distributions from the Riebe et al. (2014) calibration
sites, which span a wide range of conditions; D50 ranged from
49 to 118 mm, D84 ranged from 86 to 385 mm, and mean fork
length of spawning female salmon ranged from 445 to 721 mm.
The agreement between predictions from Equation (4) and the
graphical approach is illustrated in Figure 3. All of the data plot
close to the 1:1 line of perfect correspondence between the
analytical and graphical approaches. Residuals relative to the 1:1
line (Figure 3B) show that the model agrees with observations to
Figure 2. A graphical approach to quantifying the suitability of
spawning substrates. Cumulative distribution functions (CDFs) of grain within ~7% across a greater than four-fold range in fractional cov-
size for two lognormal grain-size distributions with equal D50 and differ- erage by movable particles. Moreover, the Nash–Sutcliffe statistic
ing D84, illustrating how the fraction of the bed that the fish can move is 0.92, indicating that the variance in the graphically measured
(FM) can be quantified graphically when DT is known (after Riebe et al., FM values is efficiently explained by the model. Hence, although
2014); FM is equivalent to the fraction finer than DT, which can be read none of the grain-size distributions that we examined were strictly
from the vertical axis at the intersection of DT with the CDF. This figure lognormal, our analysis indicates that errors introduced in the as-
is available in colour online at wileyonlinelibrary.com/journal/espl. sumptions of Equation (4) may often be small enough to ignore.

FM can still be estimated using the analytical approximation


expressed in Equations (2)-(4) (after Riebe et al., 2014). Predicting the spawning capacity of riverbeds

 -1 Once FM is quantified, whether by the graphical or analytical


F M ¼ 1þ e1:702z (2) approach, it can be recast in terms of spawning capacity,
defined as the number of redds that salmon can build per unit
Here, FM is the dimensionless fractional area of the bed that fish area and denoted NREDDS (e.g. in redds/100 m2) in Equation (5).
can move (e.g. in m2/m2). The right side of Equation (2) is a
one-parameter logistic function that approximates the cumula- N REDDS ¼ F M =AREDD 100 (5)
tive normal distribution to within 1% (Bowling et al., 2009). Here,
z is analogous to the Z statistic in the parlance of statisticians.
Recognizing that grain-size distributions are often more
lognormal than normal in shape (e.g. Bunte and Abt, 2001b),
we calculate z using Equation (3) (after Riebe et al., 2014).

logðDT =D 50 Þ
z¼ (3)
logðD84 =D 50 Þ

Here log(D50) and log(D84/D50) are the mean and standard


deviation of a lognormal grain-size distribution, and the grain
size indices D84 and D50 are expressed in consistent units of
length (e.g. millimetres). Assuming that the grain-size distribution
is approximately lognormal, Equations (2) and (3) can be used
together to estimate the fraction of the bed covered by grains
smaller than the threshold size DT, as shown in Equation (4) (after
Riebe et al., 2014).

8 2 h i39-1
< log 115ðL=600Þ0:62 =D 50 =
FM ¼ 1 þ exp4-1:702 5 (4)
: log ½D84 =D 50  ;

Here we express DT in terms of Equation (1). If a site-specific


estimate of DT is available then it could be used instead in the
numerator of the exponential term.
Equation (4) is easy to apply when estimates of fish length and
grain size are available, but it assumes that the grain-size distribu-
Figure 3. Comparison between Equation (4) and graphical approach to
tion is lognormal. Hence, it will generally be more accurate to
predicting FM. (top graph) Coverage by movable particles (FM) measured
use the graphical approach (e.g. Figure 2) for estimating FM
using graphical approach (see Figure 2) plotted against coverage by
because it does not require assumptions about the shape of the movable particles predicted from Equation (4) for Chinook salmon (grey
grain-size distribution. However, complete grain-size distribu- circles; L = 721 mm), sockeye salmon (open circles; L = 569 mm), and pink
tions are not often reported in studies of rivers, whereas the salmon (black circles; L = 445 mm) based on data from Riebe et al. (2014).
indices D50 and D84 typically are. Equation (4) should be a Residuals show that model-predicted values agree with graphical estimates
suitable option for assessing spawning substrates from existing to within ~7% across the three species of salmon (bottom graph).

© 2016 The Authors. Earth Surface Processes and Landforms published by John Wiley & Sons Ltd. Earth Surf. Process. Landforms, Vol. 41, 130–142 (2016)
TOOLS FOR GAUGING THE CAPACITY OF SALMON SPAWNING SUBSTRATES 133

Here, AREDD is the area (in m2) of a typical redd constructed by accommodate when fish are spawning en masse, in conditions
the species of interest. The factor of 100 is included so that that are not limited by other factors such as flow velocity and
NREDDS is expressed in units of redds/100 m2, consistent with depth (Moir and Pasternack, 2010), and hyporheic flow
the spatial dimensions of typical spawning patches. The value through redds (Tonina and Buffington, 2009). This is demon-
of AREDD can be estimated from redd dimensions measured in strated in Figure 4 for spawning by three Pacific salmon species
the field or from Equation (6), which is an empirical relation- across the 31 sites of Riebe et al. (2014). In all but a few cases,
ship between redd area and female salmonid length (Riebe field-surveyed areal coverage by redds was less than or equal to
et al., 2014). the fractional coverage by movable particles predicted from
AREDD ¼ 3:3½L=6002:3 (6) Equation (4) (Figure 4A). Likewise, spawning use, which was
estimated from the areal coverage of redds on the bed, was
Here, the power-law intercept and exponent are regression pa- less than or equal to spawning capacity, which can be
rameters based on a best fit to data from redds built by salmonids predicted from Equation (7) (Figure 4B). Data that plot near
spanning a wide range of sizes (after Riebe et al., 2014, based on the 1:1 line in both Figures 4A and 4B imply instances in
data from Crisp and Carling, 1989). As in Equation (1), the de- which fish were building redds in nearly all of the movable
nominator on the right side of Equation (6) is a reference value substrate. The fact that some of the observations in Figures 4A
for the regression; when L is equal to it (i.e. 600 mm), the pre- and 4B are close to the 1:1 line implies that FM and NREDDS are
dicted redd area is equal to the power-law intercept (i.e. 3.3 indices of the maximum amount of spawning habitat in a
m2). Although Equation (6) provides a very good fit to Crisp and reach when other factors, such as flow conditions and fine
Carling’s (1989) data on Atlantic salmon (Salmo salar) and trout sediment content, are not limiting (Riebe et al., 2014).
(S. trutta and Oncorhynchus mykiss), and also to Riebe et al.’s
(2014) data on Chinook, sockeye, and pink salmon (see Riebe Assessing and Monitoring Salmon Spawning
et al., 2014), site-specific values of redd area could be used to Substrates
translate values of FM into estimates of substrate spawning capac-
ity via Equation (4). Sensitivity to differences in grain size
For a wide variety of species, including both Atlantic and
Pacific salmon, Equation (6) should be an acceptable predictor Equations (4) and (7) show that FM and NREDDS can each be
of redd area. When it is, Equations (4)-(6) can be combined into expressed as a function of just three variables. In applying
a single expression for estimating spawning capacity. them to the assessment of spawning substrates for a particular

    !#)1
2:3 logð115Þþ 0:62logðL=600Þ  logðD 50 Þ
N REDDS ¼ 100 3:3ðL=600Þ 1þ exp 1:702 (7)
logðD 84 Þ  logðD 50 Þ

Like the expression in Equation (4) for FM, Equation (7) for run of salmon, it may be helpful to set fish length equal to the
NREDDS has just three variables: fish length and two grain-size mean fish length for the run and thus reduce the number of
indices that are widely reported in the literature. Hence, variables to just two: D84 and D50. One can then explore the
although Equations (4) and (7) are somewhat complicated in sensitivity of substrate spawning capacity to differences in
form, they are both computationally easy to apply to data grain size alone (e.g. from one reach to the next) by construct-
available from the literature (Riebe et al., 2014). ing contour plots of FM and NREDDS in a plotting space that
Coverage by movable particles and the spawning capacity of includes D84 and D50. The most straightforward way to display
substrates predicted from Equations (4) and (7) are both grain size in a two-dimensional plotting space is to plot the
potentially useful in river management, because they constrain standard deviation against the mean. Here, in the lognormal
the maximum amount of redd building a substrate can approximations of Equations (4) and (7), this can be done by

Figure 4. (a) Spawning use observed in field versus FM predicted from Equation (4) for three species of salmon. The fractional area used for spawning
should be less than or equal to the fractional area covered by movable substrate (FM) – this is a theoretical cap on spawning use illustrated by the 1:1
line. (b) Spawning use observed in field versus spawning capacity predicted from Equation (7) for three species of salmon (after Riebe et al., 2014).
Error bars show ±1 standard error propagated from measurement and model uncertainties. Points that plot close to the 1:1 lines (a and b) are cases
of fish spawning en masse and building redds in nearly every patch of movable substrate. This shows that model predictions of FM and NREDDS yield
realistic estimates of substrate capacity for accommodating redds in riverbeds.

© 2016 The Authors. Earth Surface Processes and Landforms published by John Wiley & Sons Ltd. Earth Surf. Process. Landforms, Vol. 41, 130–142 (2016)
134 B. T. OVERSTREET ET AL.

plotting log(D50) (the mean) on the horizontal axis and log than D50. Nevertheless, plots like these are easier to use with
(D84/D50) (the standard deviation) on the vertical axis. data from pebble counts, because they obviate the intermediate
Because D50 and D84 appear in exponential form in Equations step of calculating D84/D50; one can simply read the value of FM
(4) and (7), it is appropriate to plot them using log scales. This or NREDDS directly from the plot at the intersection of D84 and
yields the patterns in FM and NREDDS shown in Figures 5A and D50 (Figures 5C and 5D). Thus a field worker can readily quan-
5B. Inspection of these panels shows that, for a given D84/D50 tify the amount of spawning habitat in a study reach using a
(i.e. for a constant spread in the grain-size distribution), FM and graphical approach that obviates the somewhat complicated
NREDDS are both more sensitive to D50 when D84/D50 is low calculations of Equations (4) and (7). This graphical approach
than when D84/D50 is large. In addition, when D50 is less than can be applied to salmon of any size after generating a size-
DT, increases in D84/D50 correspond to decreases in FM specific chart for the fish of interest. We illustrate this for salmon
(Figure 5A) and NREDDS (Figure 5B). This is consistent with ranging in length from 250 to 950 mm (in 50 mm increments) for
concepts illustrated in Figure 1: when the spread in the distribution both FM in Figure 6 and NREDDS in Figure 7. The physical limita-
is bigger, more of the distribution lies above the threshold particle tions on redd building that are encapsulated in Equations (4)
size, such that there is less coverage by movable particles. The and (7) should apply across all of the fish lengths represented
converse is true when D50 is greater than DT, because increases in Figures 6 and 7, but only Figures 6e–6h lie within the tested
in the spread in the distribution increase the fraction of the bed range of the model (Riebe et al., 2014); more work is needed
sediment with grain sizes smaller than the threshold particle size to verify the model’s applicability to larger and smaller fish.
(which means there is more useable substrate for redd building). Applying the charts in Figures 6 and 7 to spawning habitat as-
Thus, the plots shown in Figures 5A and 5B provide useful tools sessment is straightforward. For example, if the goal is to assess
for understanding how changes in grain size are likely to spawning substrate in a reach with D50 = 100 and D84 = 250
influence the amount of spawning substrate in riverbeds. mm for a sockeye salmon with average length of 710 mm, FM
and NREDDS can be read from the intersection of D50 and D84 in
Graphical assessment of substrate spawning Figures 6j and 7j, which correspond to contour plots of FM and
capacity NREDDS of a 700 mm fish. Because the plots do not correspond
exactly to the fish length of interest, the graphical estimates
The plots in Figures 5A and 5B illustrate the sensitivity of FM and (i.e. FM = 0.61 and NREDDS = 12.8 redds/100 m2) are not exact.
NREDDS to differences in grain size for a fish with a length of 600 In the hypothetical case outlined here, the graphical approach
mm. Another way to show the results in grain-size space is to underestimates FM and overestimates NREDDS by less than 1%
simply plot D84 versus D50 (Figures 5C and 5D). This plotting relative to what one would calculate using Equations (4) and
space is complicated by a ‘forbidden zone’, (the grey space in (7). We suggest that errors introduced by rounding fish lengths
Figures 5C and 5D), which arises because D84 can never be less to the nearest 50 mm may often be small enough to ignore.

Figure 5. Variations in FM and NREDDS with grain size. Fractional coverage by movable particles (a) and spawning capacity, equal to the number of
2
redds per 100 m (b) plotted as a function of the standard deviation and the median grain size (equal to D84/D50 and D50, respectively, for a lognormal
bed-surface grain-size distribution) for a 600 mm long female salmon. Increases in the spread of the distribution lead to increases or decreases in FM
depending on whether D50 is greater than or less than DT (which is denoted by the bold vertical line in each plot). (c) and (d) recast the functions
shown in (a) and (b) in terms of D84 and D50. In this plotting space, there is a forbidden zone (grey space) encompassing impossible scenarios, in
which D50 > D84. These plots can be used in a graphical approach to assessing spawning substrates; managers can read the predicted value of FM
and NREDDS directly from these plots at the intersection of D84 and D50 for the reach of interest.

© 2016 The Authors. Earth Surface Processes and Landforms published by John Wiley & Sons Ltd. Earth Surf. Process. Landforms, Vol. 41, 130–142 (2016)
TOOLS FOR GAUGING THE CAPACITY OF SALMON SPAWNING SUBSTRATES 135

Figure 6. Variations in FM with grain size for 15 different sizes of fish ranging from 250 mm (a) to 950 mm (o). Grey region encompasses forbidden
zone of impossible scenarios in which D84 is less than D50. These graphs are reproduced in Supplementary Material 1 in a series of full-page charts
that managers can print and use in the field to estimate the fractional coverage by movable particles using the following steps: (i) measure grain-size
distribution of the bed using a pebble count or other approach; (ii) select chart corresponding to fish length of interest; (iii) read FM from the intersec-
tion of D84 and D50. This figure is available in colour online at wileyonlinelibrary.com/journal/espl

Look-up charts and tables increments of 50 mm from one page to the next. The D50 and
D84 range from 10 to 300 mm and 10 to 500 mm, respectively,
To make the habitat assessment approach of Equations (4) and in each chart, and thus cover a wide range of conditions that
(7) accessible to river managers, we have reproduced Figures 6 might be encountered in the field. Managers can use them by
and 7 in a series of larger look-up charts (sized at one per page) simply reading off FM and NREDDS at the intersection of a mea-
that could be printed and brought into the field for rapid assess- sured D50 and D84 for a fish of a particular length.
ment of spawning substrates. These charts are included in As an alternative to these charts, we have also encoded
Supplementary Material 1 and 2, which are available online Equations (4) and (7) into easy-to-use look-up tables, available
and by request from the authors. The charts show contours of online as Supplementary Material 3 and 4. In the tables, D50
FM and NREDDS, similar to those shown in Figures 6 and 7, ranges from 20 to 300 mm in 10 mm increments, D84 ranges
but without the colour, to conform to back-and-white printers from 40 to 500 mm in 20 mm increments, and L ranges from
and thus facilitate use in the field. Each chart is specific to a 100 to 1100 mm in 100 mm increments. To use these tables,
particular fish length ranging from 250 to 950 mm in one simply finds the intersection of measured values of D50,

© 2016 The Authors. Earth Surface Processes and Landforms published by John Wiley & Sons Ltd. Earth Surf. Process. Landforms, Vol. 41, 130–142 (2016)
136 B. T. OVERSTREET ET AL.

Figure 7. Variations in NREDDS with grain size for 15 different sizes of fish ranging from 250 mm (a) to 950 mm (o). Grey region encompasses for-
bidden zone of impossible scenarios in which D84 is less than D50. These graphs are reproduced in Supplementary Material 2 in a series of full-page
charts that managers can print and use in the field to assess the capacity of spawning habitat using the following steps: (i) measure grain-size distri-
bution of the bed using a pebble count or other approach; (ii) select chart corresponding to fish length of interest; (iii) read NREDDS from the intersec-
tion of D84 and D50. This figure is available in colour online at wileyonlinelibrary.com/journal/espl

D84, and L, and reads of the value of FM (Supplementary Mate- and (7) into a series of computer-based tools, which are avail-
rial 3) or NREDDS (Supplementary Material 4). Values that lie be- able in Supplementary Material 5–7 and on the second author’s
tween these increments can be approximated by interpolation. website. One of the computer-based tools (Supplementary
With Supplementary Material 1 and 2 or 3 and 4 in hand, the Material 5) is an Excel workbook consisting of three worksheets.
approach encapsulated in Equations (4) and (7) can be readily Data are entered on the sheet labelled ‘Input data here.’ Model
implemented with grain-size data from pebble counts and with outputs for the specified fish length and grain sizes are reported
fish lengths from carcass surveys and fish traps. in the sheet labelled ‘Model outputs.’ A third sheet titled ‘Read
me’ provides detailed instructions and an explanation of error
messages. Up to 500 sets of fish length and grain-size data can
Computer-based tools for applying the approach be input at a time by copying and pasting input values into the
appropriate columns in the workbook.
Recognizing that it may not always be convenient to use the We also generated a JavaScript web applet (Supplementary
look-up tables or charts, we have also encoded Equations (4) Material 6), which accepts user-provided data in an easy-to-

© 2016 The Authors. Earth Surface Processes and Landforms published by John Wiley & Sons Ltd. Earth Surf. Process. Landforms, Vol. 41, 130–142 (2016)
TOOLS FOR GAUGING THE CAPACITY OF SALMON SPAWNING SUBSTRATES 137

use graphical user interface (GUI) that can be opened in and D84) together with a measure of the largest movable parti-
JavaScript-enabled browsers (Figure 8). Data are entered in cle on the bed (predicted from fish length) and arrive at a real-
the panel marked ‘Input’ (at right, under the ‘Data’ heading), istic estimate of the area covered by movable particles. Thus,
either by typing the values for fish length, D50, and D84, or by the toolkit we have derived from the model allows managers
clicking and dragging the slider bars. The input panel automat- to gauge the spawning capacity of a substrate for a given spe-
ically keeps the values within a realistic range that is appropri- cies as a continuous function of substrate grain size. This is ap-
ate given the calibration data and ensures that D50 is never parently because Equation (4) provides a robust approximation
mistakenly given a value greater than D84. When values are to the integral of the grain-size distribution from the smallest
changed, the button marked ‘Update Model’ must be clicked grain on the bed to largest grain that fish can move (Figure 1).
to generate results for the specified fish length and grain size in-
dices in the panel marked ‘Output’. This also updates the con-
tour plots of fractional coverage by movable particles and Limitations of the tools
spawning capacity, which can be viewed by clicking the tables
under the ‘Plots’ heading in Figure 8. The bold red data point in The tools presented here are only demonstrably robust over the
each plot corresponds to the specified D84 and D50. Inputs can range of sizes represented by the calibration data  in this case,
be reset to their default values (shown in Figure 8) by clicking where D50 is between 39 and 118 mm, D84 is between 85 and
on the button marked ‘Reset Values’. 385 mm, and L is between 445 and 721 mm (Riebe et al.,
To cater to the wide audience of potential users, we have 2014). Outside these ranges, application of the relationship
replicated much of the functionality of the JavaScript web ap- for calculating DT is extrapolative. However, the calibration
plet in a MATLAB-based GUI. Data are entered in the panel data span a large range in all of the calibration variables. For
marked ‘Enter data here’. Results for the specified fish length example, the dominant grain size on the bed ranged from me-
and grain size indices are reported in the table in the middle dium gravel to cobbles and boulders. Moreover, the 445–721
panel. The outputs are updated after new data are entered by mm range in salmon length corresponds to a broad range in
clicking within the GUI or pressing ‘Enter’ on the keyboard. the ability of salmon to move sediment, spanning a 0.4–2.6
The user can select and update the desired plot (e.g. FM and kg range in the size of the largest particle moved in redds (Riebe
NREDDS) using buttons in the panel labelled ‘Update figure’. A et al., 2014). Thus, the model should be applicable to salmon
contour plot of the desired output is generated in the D84 versus and trout in general, to the extent that it captures interspecies
D50 plotting space within the GUI (at left) for the fish of interest, differences in ability to build redds using the cutting motion
with a data point corresponding to the specified D84 and D50. typical of salmonids. More research is needed to test this
hypothesis.
Our tools do not account for the widely recognized effects of
Discussion fine sediment on egg survival to emergence (e.g. Everest et al.,
1987; Bjornn and Reiser, 1991; Greig et al., 2005, 2007).
The strength of Equations (4) and (7) and the associated charts, Sediment finer than 10 mm can fill interstices of sediment and
look-up tables, and computer-based applications is that they trap fry in redds by blocking pathways for emergence (Bjornn,
are good predictors of FM (Figure 3), which in turn appears to 1969; Phillips et al., 1975; McCuddin, 1977; Harshbarger and
be a good reflector of NREDDS (Figure 4), the substrate’s capacity Porter, 1982; Bennett et al., 2003). When sediment is even finer
for accommodating redds built by the fish of interest. The pre- – less than about 1 mm in diameter – it can impede intragravel
dictive power of the model stems from its ability to take a flow of water, thus depriving incubating eggs of oxygen-rich
bed-surface grain-size distribution (represented simply by D50 water and preventing removal of toxic metabolic wastes

Figure 8. Screen capture of web-based JavaScript interface, which can be accessed online in Supplementary Material 6 and on the second author’s
website. The interface generates a plot (at left) and output data (at right) for a user-provided inputs of grain size and fish length (upper right). Users can
choose to display one of three indicators of the amount of spawning habitat in the D84 versus D50 plotting space by clicking on tabs in the plot win-
dow. This figure is available in colour online at wileyonlinelibrary.com/journal/espl

© 2016 The Authors. Earth Surface Processes and Landforms published by John Wiley & Sons Ltd. Earth Surf. Process. Landforms, Vol. 41, 130–142 (2016)
138 B. T. OVERSTREET ET AL.

(McNeil and Anhell, 1964; Greig et al., 2005). We refer the presented here; in the conditions relevant to quantifying limits
reader to several thorough reviews of the effects of fine sedi- on salmon spawning due to coarse sediment, D50 and D84
ment on egg survival to emergence for details (e.g. Chapman, are typically much greater than the 2 mm cutoff for fine sedi-
1988; Bjornn and Reiser, 1991; Kondolf, 2000; Jensen et al., ment that must be grouped into a single size class because it
2009). In summary, egg-to-fry survival for Pacific salmon has is difficult to sample and measure via pebble counts (Wolman,
been shown to drop significantly when sediment with grain 1954; Bunte and Abt, 2001b). Because the tools presented here
sizes less than 0.85 mm exceeds 10% of the sediment apply to coarse-bedded rivers, where large grains limit a
contained in the bed (Jensen et al., 2009). The tools presented salmon’s ability to move sediment, our approach is well suited
here apply to upper particle size limits on redd building and to integration of image-based grain-size mapping, including
we advise that they should be used in combination with both ground-based (Butler et al., 2001; Sime and Ferguson,
methods for assessing fine sediment suitability (e.g. Kondolf, 2003; Graham et al., 2005; Graham et al., 2010; Buscombe
2000; Bunte, 2004; Jensen et al., 2009). et al., 2010) and aerial-based techniques (Carbonneau et al.,
Particles on bed surfaces that have been winnowed of fine 2004; Verdú et al., 2005; Black et al., 2014). However, conver-
sediment are often more difficult to move than the same sized sion between image- and pebble count-derived grain-size
particles on a loose bed (Parker and Klingeman 1982; Dietrich distributions will be required (Graham et al., 2012).
et al., 1989). On such armoured beds, estimates of DT from In practice, grain size generally needs to be measured at as
Equation (1) may be larger than what a spawning salmon can many representative locations as possible, because it can vary
realistically move. For the most realistic estimates of DT, we considerably, even over the confined scale of a spawning riffle.
recommend site-specific measurements of the largest particles Pebble counts should be conducted within carefully defined
moved in spawning redds, which could be used instead of textural facies (Buffington and Montgomery, 1999), where the
Equation (1) if armouring is expected to be important. bed-surface grain-size distribution appears to be spatially in-
Our tools do not account for the effects of superimposition variant. The spatial extent of the grain-size measurement will
(e.g. Fukushima et al., 1998), which occurs when female be determined by the variability of textural facies. For example,
salmon destroy existing redds by building new redds over in the study that calibrated Equations (4) and (7), pebble counts
them. Somewhat paradoxically, superimposition can increase were conducted in 100–200 m2 sampling areas, consistent
the spawning capacity of a substrate by decreasing the average with the spatial extent of distinct textural facies within the study
spacing of egg pockets (van den Berghe and Gross, 1984). reaches (Riebe et al., 2014). Smaller streams may have higher
Thus we suggest that the estimates of spawning capacity spatial variability of textural facies and thus may need to have
(i.e. NREDDS in Figure 7) are minima, due to the reduction in smaller sampling areas. We suggest that our model can be ap-
minimum area required per redd that may be caused by plied to scales ranging from a few square metres to hundreds
superimposition. As a direction for future research, the effects and perhaps even thousands of square metres depending on
of superimposition on the spawning capacity of substrates the redd size of the species of interest, the spatial variability
could be explored at the reach scale by coupling our of grain size, and the required precision of a study.
substrate model (Equations (4) and (7)) with an individually In most cases application of this method will be limited to
based population model, and thus account for run timing, wadeable streams – e.g. with flow less than 1.5 m/s and depth
guarded area, and other factors that influence superimposi- less than 1 m (Abt et al., 1989) – where surface grain-size data
tion (e.g. Bartholow, 1996). can be collected via pebble counts. However, image-based
grain size sampling or underwater sampling methods could al-
low sampling in larger rivers. Sampling in larger rivers could
Data requirements
also be possible where flow is seasonally reduced or diverted.
Our tools for gauging the capacity of spawning substrates are In any case, when sampling facies before or after a spawning
easy to use. Only fish length and a measurement of the season, it will be vital to consider the flow stage and inundation
grain-size distribution are needed to apply it to a site. The area that typically prevail during spawning runs to avoid
pebble count is a straightforward, widely used method for overestimating or underestimating available spawning habitat.
characterizing the grain-size distribution of a riverbed. In addition, sample sites in a time series of monitoring measure-
However, care is needed to obtain accurate, repeatable ments would need to be located as closely in space as possible
measurements. Operator bias (Hey and Thorne, 1983; Marcus during successive measurements if the goal is to track changes
et al., 1995; Wohl et al., 1996), sample size (Rice and Church, in spawning habitat over time.
1996), particle selection methods (Bunte and Abt, 2001a,
2001b; Bunte et al., 2009), and measurement methods (Bunte Estimating the reproductive potential of spawning
et al., 2009) all influence pebble count results. Likewise, fish
substrates
lengths can vary substantially both within a given reach of river
in any given year and also from one year to the next (Johnson In attempting to gauge the viability of a prospective restoration
and Friesen, 2013). These factors lead to uncertainties in FM project, it may be useful to predict outcomes in terms of salmon
and NREDDS that can be quantified by propagating estimated reproduction. For example, in our previous work, we defined
errors in D50, D84, and L through Equations (4) and (7). Thus, the reproductive potential of the substrate (NEGGS) as the num-
data quality and sampling methods should always be assessed ber of eggs per unit area that can be accommodated within the
and accounted for prior to drawing conclusions about FM and substrate (Riebe et al., 2014). This can be calculated from
NREDDS from grain-size and fish length data reported in the Equation (8) when fecundity, E, the number of eggs produced
literature. For example, more exhaustive pebble counts may per fish (and thus per redd), is known for the species of interest.
be required to resolve smaller differences in D50 and D84
(Rice and Church, 1996; Larsen et al., 2004) and thus in N EGGS ¼ N REDDS E=1000 (8)
FM and NREDDS.
Pebble counts are often a poor reflector of fine particles in Here NEGGS is the number of eggs in redds within the reach in
the grain-size distribution due to the difficulty of sampling them units of thousands of eggs per 100 m2. Fecundity generally
and measuring their dimensions (Rice, 1995). However, this increases with fish length both within and across salmonid
has few if any implications for application of the tools species (Beacham and Murray, 1993; Quinn, 2005). This is

© 2016 The Authors. Earth Surface Processes and Landforms published by John Wiley & Sons Ltd. Earth Surf. Process. Landforms, Vol. 41, 130–142 (2016)
TOOLS FOR GAUGING THE CAPACITY OF SALMON SPAWNING SUBSTRATES 139

illustrated in Equation (9), a best-fit least-squares relationship capacity and reproductive potential of substrates. Thus, the
between average fecundity and average fish length for a series tools presented here should provide realistic estimates of how
of measurements reported in Quinn (2005) (after Riebe et al., spawning habitat degradation (or enhancement) contributes to
2014). observed decreases (or increases) in salmon populations. Yet
it is crucial to recognize that Equations (4), (7), and (8) are con-
E ¼ 8:1L 1450 (9) cerned with just one of the many potential limits on salmon
populations – i.e. the upper grain-size limit on redd building
Thus, by combining Equations (7) and (9) in Equation (8), it is in coarse riverbeds. Hence the tools presented here are only
easy to translate the contour plot of NREDDS (Figure 5B) into a likely to inform management of salmon populations when oth-
contour plot of NEGGS (Figure 9). Both the JavaScript and erwise confounding factors, such as the abundance of fine sed-
MATLAB interfaces (Supplementary Material 6 and 7) include iment, ocean conditions (Nickelson, 1986), stream temperature
plots and output data for NEGGS based on E calculated using (Richter and Kolmes, 2005), disease (Krkošek and Hilborn,
Equation (9) (see for example, Figure 8). 2011), and predation (Peterman and Gatto, 1978; Quinn and
Equation (9) explains 70% of the variance in average Kinnison, 1999) are taken into account. Moreover, care should
fecundity across 13 species of salmon, trout, and char spanning be taken in applying the tools presented here outside the
a wide range in average fish sizes. However, it is important to Pacific Northwest and California, where they were calibrated.
recognize that regional and intrapopulation differences in Although our toolkit should be widely applicable to coarse-
fecundity–length relationships can be substantial (Healey and bedded rivers where salmonids spawn, it has limitations that
Heard, 1984; Beacham and Murray, 1993). Hence, we stress will need to be accounted for in some settings. For example,
that estimates of NEGGS that incorporate Equation (9) can at best in steep, step-pool reaches, where salmonid species spawn in
provide a generalized understanding of how substrate small isolated patches of movable substrate (Montgomery
reproductive potential varies in nature. We recommend using et al., 1999; Sear, 2010), our tools would likely need to be
site-specific values of E whenever possible to translate estimates calibrated to apply to only the individual patches of movable
of NREDDS from Equation (7) into estimates of NEGGS via substrate.
Equation (8).
Equations (4), (7), and (8) yield several potentially useful indi-
ces of ecosystem function (i.e. FM, NREDDS and NEGGS). They Optimizing spawning habitat restoration projects
provide the means for translating observed changes in grain
size into estimates of resulting changes in the salmon spawning Equation (4) and the tools derived from it show that FM
decreases monotonically with increases in D50 for a given
spread in the distribution (i.e. for a given D84/D50). Hence, it
is apparently always better to have a finer D50 if the desire is
more movable substrate (and more spawning capacity).
However, other factors besides FM must be taken into account
to assess spawning substrates and optimize gravel augmenta-
tion projects. For example, in addition to the previously
mentioned effects on egg survival to emergence, a bed that is
too fine-grained might lack occasional large ‘centrum’ rocks,
which may be needed to stabilize redds and provide shelter
for egg deposition (Hobbs, 1937; Burner, 1951; Jones and Ball,
1954). Moreover any added sediment should be coarse enough
that it is stable against mobilization and rapid downstream
transport in the flow of the river (e.g. Buffington and
Montgomery, 1997). Hence, we suggest that FM should be used
together with sediment transport modelling (e.g. Bunte et al.,
2013; Heimann et al., 2014), known flow criteria for spawning
and incubation (e.g. Tonina and Buffington, 2009; Moir and
Pasternack, 2010), and known limits on fine sediment
accumulation in redds (Jensen et al., 2009) to engineer a
hydrodynamically stable substrate that accommodates as many
redds as possible without being so fine that it suffocates eggs or
entombs fry. Thus the physical limits on redd building that are
incorporated into Equations (4) and (7) can be used together
with conventional understanding of hydraulics and sediment
Figure 9. Variations in NEGGS with grain size. Number of eggs (in transport to create stable channels that support good salmon
2
thousands) per 100 m plotted as a function of the standard deviation spawning habitat (Wohl et al., 2015). With insight from
and the mean grain size (equal to D84/D50 and D50, respectively, for a Equations (4), (7), and (9), the cost-benefit analysis of sediment
lognormal bed-surface grain-size distribution) for a 600 mm long fe- augmentation could be simplified to the cost per egg for
male salmon. The value of NEGGS is the reproductive potential of the sediment added to the bed (Riebe et al., 2014). In this way,
substrate; it expresses the number of eggs the substrate could physically our approach could help managers optimize selection of
accommodate and reflects limitations set by the size of the fish, which restoration sites for minimal cost and maximum benefit to the
determines fecundity, the number of redds that can be fit into a given
species of interest.
area, and the fractional coverage by immovable grains on bed. The
NEGGS reflects a space limitation and is distinct from survival to emer-
The tools presented here can also be readily used to quantify
gence (i.e. successful reproduction), which is moderated by environ- how much bed-surface area needs to be restored to meet
mental factors such as flow depth, velocity, scour, and contamination established restoration objectives. As noted earlier, the sensitiv-
of the bed by fine sediment. This figure is available in colour online ity of FM to differences in D50 depends on the spread in the
at wileyonlinelibrary.com/journal/espl grain-size distribution (Figures 5A and 5B); when the spread is

© 2016 The Authors. Earth Surface Processes and Landforms published by John Wiley & Sons Ltd. Earth Surf. Process. Landforms, Vol. 41, 130–142 (2016)
140 B. T. OVERSTREET ET AL.

large, bigger changes in D50 are needed for a desired change in • gauging the capacity of spawning substrates across sites and
coverage by movable particles (and thus by extension, desired salmonid species;
changes in NREDDS and NEGGS). This suggests that initial condi- • optimizing selection of restoration sites for maximum benefit
tions must be considered in the assessment of how much resto- to the species of interest;
ration is needed. The lookup charts in Figures 6 and 7 generally • quantifying how much bed-surface area needs to be restored
suggest that bigger increases in FM and NREDDS (and thus bigger to meet established restoration objectives;
increases in NEGGS) can be gained by adding movable sedi- • improving cost-benefit analysis in the allocation of river res-
ment to reaches with relatively low D84/D50 (i.e. with rela- toration budgets among prospective sites and activities;
tively narrow grain-size distributions). Moreover Figures 6 • optimizing grain-size distributions in gravel augmentation
and 7 show that habitat can be improved by reducing D84/ projects to create hydrodynamically stable substrates that
D50 without changing D50 when D50 < DT. This implies that hold as many redds as possible;
habitat can be improved without gravel augmentation by re- • monitoring changes in the reproductive potential of
moving the coarsest sediment from the bed and thus reducing spawning substrates over time to assess the effectiveness of
D84/D50. Somewhat paradoxically, Figures 6 and 7 also sug- restoration projects and to quantify impacts of land use and
gest that it may be more economical on a cost-per-egg basis climate change;
to focus restoration on reaches that already support consider- • contributing to more realistic models of salmon population
able spawning. This presumes, of course, that hydraulic fac- dynamics.
tors are suitable enough for fish to exploit new areas of
movable sediment in the reach. Such sites may often have In summary, the tools presented here provide a multifaceted
the added advantage of being hydrodynamically stable, and comprehensive new approach to gauging the spawning ca-
which would contribute to longer residence times for added pacity and reproductive potential of riverbed substrates used by
sediment. In any case, the tools presented here can help in al- female salmon for redd building when factors such as fine sed-
locating resources to the reaches that would yield the biggest iment content, flow depth, and velocity are within suitable
and most stable increases in reproductive potential of ranges. Our toolkit also provides a mechanistic basis for
spawning substrates. optimizing gravel augmentation, thus contributing to more
Once augmentation projects have been initiated, our tools cost-effective, scientifically based restoration of salmon
for gauging spawning substrates can be readily used to monitor spawning in coarse-bedded rivers.
changes in reproductive potential over time, thus enabling
assessment of whether restoration projects are meeting desired Notation
goals (Riebe et al., 2014). When historical records are avail-
able, our tools can be used to quantify how measured changes
in grain size may have contributed to changes in populations AREDD Map area of redd (m2).
over time. Hence one could test hypotheses about cause–effect D50, D84 50th and 84th percentiles of grain diameters on river-
connections between historical declines in spawning and bed (mm).
changes in spawning substrates, and thus build evidence for DT Intermediate-axis diameter of largest sediment grain
(or rule out) gravel augmentation as a viable approach to revi- that salmon of a particular size can move during redd
talizing salmon populations in a reach of interest. Quantifying building (mm).
historical changes in reproductive potential could also help E Fecundity, which is the number of eggs female salmon
managers understand and possibly also predict impacts of land produce (eggs/fish) and thus also the maximum num-
use and climate change on the amount and quality of spawning ber they can deposit within an individual redd (eggs
substrates (Riebe et al., 2014). /redd).
FM Fractional coverage of bed by particles that female
salmon can move during redd building.
Conclusions L Fork length of female salmon (mm).
NREDDS Substrate spawning capacity, equal to the maximum
Our new tools for assessing spawning habitat quality employ number of redds that can be built per unit area in a
easy-to-measure inputs of D50, D84, and fish length to gauge given reach by a fish of a given size (redds/100 m2).
a substrate’s spawning capacity, defined as the number of redds NEGGS Substrate reproductive potential, equal to the maximum
per unit area that can be accommodated by the riverbed. number of eggs that can be deposited per unit area in a
Though the formulations of this new approach are somewhat given reach by a fish of a given size (1000 eggs/100 m2).
complex, they are derived from empirical relationships that z Dimensionless exponent analogous to Z statistic in one-
capture the mechanics of redd building and also fit data from parameter logistic-function approximation of the cumu-
diverse species of salmon across riverbeds with diverse grain- lative normal distribution.
size distributions. Moreover, as demonstrated here, they are
readily encapsulated in a series of easy-to-use charts, tables,
and computer-based applications. The result is a management Acknowledgements—This work was supported by the National Science
toolkit that accounts for interspecies differences in ability to Foundation grant EAR-0956289 to Riebe. The authors thank Frank
move sediment for salmonids that build redds using a cutting Ligon for inspiration and Matt Sloat and Nick Brozović for helpful
motion. All that is needed to apply this toolkit is a pebble count discussions. The authors also thank two anonymous reviewers and
and a carcass survey, or some other measurement of fish length. the associate editor for comments and suggestions that improved the
With additional measurements of fecundity, the predictions of manuscript.
spawning capacity can be translated to predictions of repro-
ductive potential, defined as the maximum number of eggs that
can be deposited per unit area for the fish of interest. Thus, the References
tools presented here can be readily applied to address a wide Abt SR, Wittier RJ, Taylor A, Love DJ. 1989. Human stability in a high
range of issues in the management of salmon spawning habitat. flood hazard zone. JAWRA Journal of the American Water Resources
These include: Association 25: 881–890. DOI:10.1111/j.1752-1688.1989.tb05404.x.

© 2016 The Authors. Earth Surface Processes and Landforms published by John Wiley & Sons Ltd. Earth Surf. Process. Landforms, Vol. 41, 130–142 (2016)
TOOLS FOR GAUGING THE CAPACITY OF SALMON SPAWNING SUBSTRATES 141

Bartholow JM. 1996. Sensitivity of a salmon population model to alter- Butler JB, Lane SN, Chandler JH. 2001. Automated extraction of grain-size
native formulations and initial conditions. Ecological Modelling 88: data from gravel surfaces using digital image processing. Journal of Hy-
215–226. DOI:10.1016/0304-3800(95)00108-5. draulic Research 39: 519–529. DOI:10.1080/00221686.2001.9628276.
Beacham TD, Murray CB. 1993. Fecundity and egg size variation in Buscombe D, Rubin DM, Warrick JA. 2010. A universal approximation
North American Pacific salmon (Oncorhynchus). Journal of Fish Biol- of grain size from images of noncohesive sediment. Journal of Geo-
ogy 42: 485–508. DOI:10.1111/j.1095-8649.1993.tb00354.x. physical Research 115: F02015. DOI:10.1029/2009JF001477.
Beechie T, Snover A. 2014. Negotiating the question: using science- Carbonneau PE, Lane SN, Bergeron NE. 2004. Catchment-scale map-
manager communication to develop management-relevant science ping of surface grain size in gravel bed rivers using airborne digital
products, Abstract EP41C-07 presented at 2014 Fall Meeting, AGU, imagery. Water Resources Research 40: W07202. DOI:10.1029/
San Francisco, CA, 15–19 December. 2003WR002759.
Bennett DH, Conor WP, Eaton CA. 2003. Substrate composition and Carlson SM, Satterthwaite WH. 2011. Weakened portfolio effect in a
emergence success of fall Chinook salmon in the Snake River. North- collapsed salmon population complex. Canadian Journal of Fisheries
west Science 77: 93–99. and Aquatic Sciences 68: 1579–1589. DOI:10.1139/f2011-084.
van den Berghe EP, Gross MR. 1984. Female size and nest depth in Chambers JS, Allen GH, Pressey RT. 1955. Research Relating to Study of
coho salmon (Oncorhynchus kisutch). Canadian Journal of Fisheries Spawning Gravels in Natural Areas, Annual Report 1955. Olympia,
and Aquatic Sciences 41: 204–206. DOI:10.1139/f84-022. WA: Washington Department of Fisheries.
Bernhardt ES, Palmer MA, Allan JD, Alexander G, Barnas K, Brooks S, Chapman DW. 1988. Critical review of variables used to define
Carr J, Clayton S, Dahm C, Follstad-Shah J, Galat D, Gloss S, effects of fines in redds of large salmonids. Transactions of the
Goodwin P, Hart D, Hassett B, Jenkinson R, Katz S, Kondolf GM, American Fisheries Society 117: 1–21. DOI:10.1577/1548-8659/
Lake PS, Lave R, Meyer JL, O’Donnell TK, Pagano L, Powell B, 1548-8659(1988)117<0001:CROVUT>2.3.CO;2.
Sudduth E. 2005. Synthesizing U.S. river restoration efforts. Science Crisp DT, Carling PA. 1989. Observations on siting, dimensions and
308: 636–637. DOI:10.1126/science.1109769. structure of salmonid redds. Journal of Fish Biology 34: 119–134.
Bernhardt ES, Sudduth EB, Palmer MA, Allan JD, Meyer JL, Alexander DOI:10.1111/j.1095-8649.1989.tb02962.x.
G, Follastad-Shah J, Hassett B, Jenkinson R, Lave R, Rumps J, Pagano Dietrich WE, Kirchner JW, Ikeda H, Iseya F. 1989. Sediment supply and
L. 2007. Restoring rivers one reach at a time: results from a survey of the development of the coarse surface layer in gravel-bedded rivers.
U.S. river restoration practitioners. Restoration Ecology 15: 482–493. Nature 340: 215–217. DOI:10.1038/340215a0.
DOI:10.1111/j.1526-100X.2007.00244.x. Everest FL, Beschta RL, Scrivener JC, Koski KV, Sedell JR, Cederholm CJ.
Bjornn TC. 1969. Embryo survival and emergence studies. Project F-49- 1987. Fine sediment and salmonid production – a paradox. In
R-7, Job 5, Job Completion Report, Idaho Fish and Game Depart- Streamside Management: Forestry and Fishery Interactions, Salo EO,
ment, Federal Aid in Fish Restoration: Boise, ID. Cundy TW (eds) (eds).. College of Forest Resources, University of
Bjornn TC, Reiser DW. 1991. Habitat requirements of salmonids in Washington: Seattle, WA; 98–142.
streams. In Influence of Forest and Rangeland Management on Sal- Fukushima M, Quinn TJ, Smoker WW. 1998. Estimation of eggs lost
monid Fishes and Their Habitats, Meehan WR (ed), American Fisher- from superimposed pink salmon (Oncorhynchus gorbuscha) redds.
ies Society Special Publication 19. American Fisheries Society: Canadian Journal of Fisheries and Aquatic Sciences 55: 618–625.
Bethesda, MD; 83–138. DOI:10.1139/f97-260.
Black M, Carbonneau P, Church M, Warburton J. 2014. Mapping sub- Graham DJ, Rice SP, Reid I. 2005. A transferable method for the auto-
pixel fluvial grain sizes with hyperspatial imagery. Sedimentology mated grain sizing of river gravels. Water Resources Research 41:
61: 691–711. DOI:10.1111/sed.12072. W07020. DOI:10.1029/2004WR003868.
Bowling SR, Khasawneh MT, Kaewkuekool S, Cho BR. 2009. A logistic Graham DJ, Rollet A-J, Piégay H, Rice SP. 2010. Maximizing the accu-
approximation to the cumulative normal distribution. Journal of In- racy of image-based surface sediment sampling techniques. Water
dustrial Engineering and Management 2: 114–127. DOI:10.3926/ Resources Research 46: W02508. DOI:10.1029/2008WR006940.
jiem.2009.v2n1.p114-127. Graham D, Rollet A, Rice S, Piégay H. 2012. Conversions of surface
Buffington JM, Montgomery DR. 1997. A systematic analysis of eight grain-size samples collected and recorded using different proce-
decades of incipient motion studies, with special reference to dures. Journal of Hydraulic Engineering 138: 839–849.
gravel-bedded rivers. Water Resources Research 33: 1993–2029. DOI:10.1061/(ASCE)HY.1943-7900.0000595.
DOI:10.1029/96WR03190. Greig SM, Sear DA, Carling PA. 2005. The impact of fine sediment ac-
Buffington JM, Montgomery DR. 1999. A procedure for classifying cumulation on the survival of incubating salmon progeny: Implica-
textural facies in gravel-bed rivers. Water Resources Research 35: tions for sediment management. Science of the Total Environment
1903–1914. DOI:10.1029/1999WR900041. 344: 241–258. DOI:10.1016/j.scitotenv.2005.02.010.
Bunte K. 2004. State of the Science Review, Gravel Mitigation and Aug- Greig SM, Sear DA, Carling PA. 2007. A review of factors influencing
mentation below Hydroelectric Dams: A Geomorphological Perspec- the availability of dissolved oxygen to incubating salmonid embryos.
tive, Report submitted to the Stream Systems Technology Centre. US Hydrological Processes 21: 323–334. DOI:10.1002/hyp.6188.
Department of Agriculture, Forest Service, Rocky Mountain Research Harshbarger TJ, Porter PE. 1982. Embryo survival and fry emergence
Station: Fort Collins, CO; 234. from two methods of planting brown trout eggs. North American
Bunte K, Abt SR. 2001a. Sampling frame for improving pebble count Journal of Fisheries Management 2: 84–89. DOI:10.1577/1548-
accuracy in coarse gravel-bed streams. JAWRA Journal of the Ameri- 8659(1982).
can Water Resources Association 37: 1001–1014. DOI:10.1111/ Healey MC, Heard WR. 1984. Inter- and intra-population variation in
j.1752-1688.2001.tb05528. the fecundity of Chinook salmon (Oncorhynchus tshawytscha) and
Bunte K, Abt SR. 2001b. Sampling Surface and Subsurface Particle-size its relevance to life history theory. Canadian Journal of Fisheries
Distributions in Wadable Gravel- and Cobble-bed Streams for Analy- and Aquatic Sciences 41: 476–483. DOI:10.1139/f84-057.
ses in Sediment Transport, Hydraulics, and Streambed Monitoring, Heimann FUM, Rickenmann D, Turowski JM, Kirchner JW. 2014.
General Technical Report RMRS-GTR-74. US Department of Agricul- sedFlow – an efficient tool for simulating bedload transport, bed
ture, Forest Service, Rocky Mountain Research Station: Fort Collins, roughness, and longitudinal profile evolution in mountain streams.
CO; 428. Earth Surface Dynamics Discussions 2: 733–772. DOI:10.5194/
Bunte K, Abt SR, Potyondy JP, Swingle KW. 2009. Comparison of three esurfd-2-733-2014.
pebble count protocols (EMAP, PIBO, and SFT) in two mountain Hey R, Thorne C. 1983. Accuracy of surface samples from gravel bed
gravel-bed streams. JAWRA Journal of the American Water Resources material. Journal of Hydraulic Engineering 109: 842–851.
Association 45: 1209–1227. DOI:10.1111/j.1752-1688.2009.00355.x. DOI:10.1061/(ASCE)0733-9429(1983)109:6(842.
Bunte K, Abt SR, Swingle KW, Cenderelli DA, Schneider JM. 2013. Crit- Hobbs DF. 1937. Natural reproduction of quinnat salmon, brown and
ical shields values in coarse-bedded steep streams. Water Resources rainbow trout in certain New Zealand waters. New Zealand Marine
Research 49(11): 7427–7447. DOI:10.1002/2012wr012672. Department of Fisheries Bulletin 6: 104.
Burner CJ. 1951. Characteristics of spawning nests of Columbia River Jensen DW, Steel EA, Fullerton AH, Pess GR. 2009. Impact of fine sed-
salmon. United States Fish Wildlife Service Fishery Bulletin 52: 94–110. iment on egg-to-fry survival of Pacific salmon: a meta-analysis of

© 2016 The Authors. Earth Surface Processes and Landforms published by John Wiley & Sons Ltd. Earth Surf. Process. Landforms, Vol. 41, 130–142 (2016)
142 B. T. OVERSTREET ET AL.

published studies. Reviews in Fisheries Science 17: 348–359. Phillips RW, Lantz RL, Claire EW, Moring JR. 1975. Some effects of
DOI:10.1080/10641260902716954. gravel mixtures on emergence of coho salmon and steelhead trout
Johnson MA, Friesen TA. 2013. Age at maturity, fork length, and sex ra- fry. Transactions of the American Fisheries Society 104: 461–466.
tio of Upper Willamette River hatchery spring Chinook salmon. DOI:10.1577/1548-8659(1975)104.
North American Journal of Fisheries Management 33: 318–328. Quinn TP. 2005. Behavior and Ecology of Pacific Salmon and Trout.
DOI:10.1080/02755947.2012.760503. UBC Press: Vancouver, BC.
Jones JW, Ball JN. 1954. The spawning behaviour of brown trout and Quinn TP, Kinnison MT. 1999. Size-selective and sex-selective preda-
salmon. The British Journal of Animal Behaviour 2: 103–114. tion by brown bears on sockeye salmon. Oecologia 121: 273–282.
DOI:10.1016/S0950-5601(54)80046-3. DOI:10.1007/s004420050929.
Kellerhals R, Bray DI. 1971. Sampling procedures for coarse fluvial sed- Quinn TP, Hendry AP, Wetzel LA. 1995. The influence of life history
iments. Journal of the Hydraulics Division 97: 1165–1180. trade-offs and the size of incubation gravels on egg size variation in
Kondolf GM. 1988. Salmonid Spawning Gravels: A Geomorphic Per- sockeye salmon (Oncorhynchus nerka). Oikos 74: 425–438.
spective on their Size Distribution, Modification by Spawning Fish, DOI:10.2307/3545987.
and Criteria for Gravel Quality, Doctoral Dissertation. John Hopkins Rice S. 1995. The Spatial Variation and Routine Sampling of Spawning
University, Baltimore, MD. Gravels in Small Coastal Streams, Working Paper 06/1995. Victoria,
Kondolf GM. 2000. Assessing salmonid spawning gravel quality. Transac- BC: Research Branch, BC Ministry of Forests.
tions of the American Fisheries Society 129: 262–281. DOI:10.1577/ Rice S, Church M. 1996. Sampling surficial fluvial gravels; the precision
1548-8659(2000)129<0262:assgq>2.0.co;2. of size distribution percentile sediments. Journal of Sedimentary Re-
Kondolf GM, Wolman MG. 1993. The sizes of salmonid spawning search 66: 654–665.
gravels. Water Resources Research 29: 2275–2285. DOI:10.1029/ Richter A, Kolmes SA. 2005. Maximum temperature limits for Chinook,
93wr00402. coho, and chum salmon, and steelhead trout in the Pacific
Kondolf GM, Anderson S, Lave R, Pagano L, Merenlender A, Bernhardt ES. Northwest. Reviews in Fisheries Science 13: 23–49. DOI:10.1080/
2007. Two decades of river restoration in California: what can we 10641260590885861.
learn? Restoration Ecology 15: 516–523. DOI:10.1111/j.1526- Riebe CS, Sklar LS, Overstreet BT, Wooster JK. 2014. Optimal reproduc-
100X.2007.00247.x. tion in salmon spawning substrates linked to grain size and fish
Krkošek M, Hilborn R. 2011. Sea lice (Lepeophtheirus salmonis) infesta- length. Water Resources Research 50: 898–918. DOI:10.1002/
tions and the productivity of pink salmon (Oncorhynchus gorbuscha) 2013wr014231.
in the Broughton Archipelago, British Columbia, Canada. Canadian Sear D 2010. Integrating science and practice for the sustainable man-
Journal of Fisheries and Aquatic Sciences 68: 17–29. DOI:10.1139/ agement of in-channel salmonid habitat. In Salmonid Fisheries:
F10-137. Freshwater Habitat Management, Kemp P (ed.). Wiley-Blackwell:
Larsen DP, Kaufmann PR, Kincaid TM, Urquhart NS. 2004. Detecting Oxford; 81–118. DOI: 10.1002/9781444323337.ch4
persistent change in the habitat of salmon-bearing streams in the Pa- Sime LC, Ferguson RI. 2003. Information on grain sizes in gravel-bed
cific Northwest. Canadian Journal of Fisheries and Aquatic Sciences rivers by automated image analysis. Journal of Sedimentary Research
61: 283–291. DOI:10.1139/f03-157. 73: 630–636. DOI:10.1306/112102730630.
Ligon FK, Dietrich WE, Trush WJ. 1995. Downstream ecological effects Tonina D, Buffington JM. 2009. A three-dimensional model for analyz-
of dams. BioScience 45: 183–192. DOI:10.1002/2013wr014231. ing the effects of salmon redds on hyporheic exchange and egg
MarcusWA,LaddSC,StoughtonJA,StockJW.1995.Pebblecountsandthe pocket habitat. Canadian Journal of Fisheries and Aquatic Sciences
role of user-dependentbias in documenting sediment size distributions. 66: 2157–2173. DOI:10.1139/F09-146.
WaterResourcesResearch31:2625–2631.DOI:10.1029/95WR02171. US Department of the Interior, Bureau of Reclamation (USBR) and US
May CL, Pryor B, Lisle TE, Lang M. 2009. Coupling hydrodynamic Fish and Wildlife Service (USFWS). 2014. Central Valley Project Im-
modeling and empirical measures of bed mobility to predict the risk provement Act – Fiscal Year 2013 Annual Report. USBR and USFWS:
of scour and fill of salmon redds in a large regulated river. Water Re- Washington, DC.
sources Research 45: W05402. DOI:10.1029/2007WR006498. Verdú JM, Batalla RJ, Martínez-Casasnovas JA. 2005. High-resolution
McCuddin ME. 1977. Survival of Salmon and Trout Embryos and Fry in grain-size characterisation of gravel bars using imagery analysis
Gravel-sand Mixtures, MS Thesis. University of Idaho, Moscow, ID; 30. and geo-statistics. Geomorphology 72: 73–93. DOI:10.1016/j.
McNeil WJ, Anhell WH. 1964. Success of Pink Salmon Spawning Rel- geomorph.2005.04.015.
ative to Size of Spawning Bed Materials, US Fish and Wildlife Service Wohl EE, Anthony DJ, Madsen SW, Thompson DM. 1996. A compari-
Special Scientific Report-Fisheries No. 469. US Fish and Wildlife Ser- son of surface sampling methods for coarse fluvial sediments. Water
vice: Washington, DC; 15. Resources Research 32: 3219–3226. DOI:10.1029/96WR01527.
Moir HJ, Pasternack GB. 2010. Substrate requirements of spawning Wohl EE, Angermeier PL, Bledsoe B, Kondolf GM, MacDonnell L,
Chinook salmon (Oncorhynchus tshawytscha) are dependent on Merritt DM, Palmer MA, Poff NL, Tarboton D. 2005. River restora-
local channel hydraulics. River Research and Applications 26: tion. Water Resources Research 41: W10301. DOI:10.1029/
456–468. DOI:10.1002/rra.1292. 2005wr003985.
Montgomery DR, Beamer EM, Pess GR, Quinn TP. 1999. Channel type Wohl EE, Bledsoe BP, Jacobson RB, Poff NL, Rathburn SL, Walters DM,
and salmonid spawning distribution and abundance. Canadian Jour- Wilcox AC. 2015. The natural sediment regime in rivers: broadening
nal of Fisheries and Aquatic Sciences 56: 377–387. DOI:10.1139/ the foundation for ecosystem management. BioScience 65: 358–371.
f98-181. DOI:10.1093/biosci/biv002.
Nehlsen W, Williams JE, Lichatowich JA. 1991. Pacific salmon at the Wolman MG. 1954. A method of sampling coarse river-bed material.
crossroads – stocks at risk from California, Oregon, Idaho, and Transactions of the American Geophysical Union 35: 951–956.
Washington. Fisheries 16: 4–21. DOI:10.1577/1548-8446(1991) DOI:10.1029/TR035i006p00951.
016<0004:PSATCS>2.0.CO;2. Yoshiyama RM, Fisher FW, Moyle PB. 1998. Historical abundance and
Nickelson TE. 1986. Influences of upwelling, ocean temperature, and decline of Chinook salmon in the Central Valley Region of California.
smolt abundance on marine survival of coho salmon (Oncorhynchus North American Journal of Fisheries Management 18: 487–521.
kisutch) in the Oregon production area. Canadian Journal of Fisheries DOI:10.1577/1548-8675(1998)018<0487:HAADOC>2.0.CO;2.
and Aquatic Sciences 43: 527–535. DOI:10.1139/f86-063.
Orcutt DR, Pulliam BR, Arp A. 1968. Characteristics of steelhead trout
redds in Idaho streams. Transactions of the American Fisheries Society Supporting Information
97: 42–45. DOI:10.1577/1548-8659(1968)97[42:COSTRI]2.0.CO;2.
Parker G, Klingeman PC. 1982. On why gravel bed streams are paved. Water
Resources Research 18: 1409–1423. DOI:10.1029/WR018i005p01409. Additional supporting information may be found in the online
Peterman RM, Gatto M. 1978. Estimation of functional responses of version of this article at the publisher’s web site.
predators on juvenile salmon. Journal of the Fisheries Research Board
of Canada 35: 797–808. DOI:10.1139/f78-129.

© 2016 The Authors. Earth Surface Processes and Landforms published by John Wiley & Sons Ltd. Earth Surf. Process. Landforms, Vol. 41, 130–142 (2016)

You might also like