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Biocatalysis and Agricultural Biotechnology 28 (2020) 101758

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Biocatalysis and Agricultural Biotechnology


journal homepage: http://www.elsevier.com/locate/bab

Functional identification and characterization of midgut microbial flora


derived from lepidopteran larvae Spodoptera litura Fab.
Sengodan Karthi a, b, Babyshalini Panneerselvam a, Sengottayan Senthil-Nathan b,
Prabhakaran Vasantha-Srinivasan c, Muthugoundar Subramaniam Shivakumar a, **,
Patcharin Krutmuang d, e, *
a
Molecular Entomology Lab, Department of Biotechnology, School of Biosciences, Periyar University, Salem, 11, Tamil Nadu, India
b
Division of Biopesticides and Environmental Toxicology, Sri Paramakalyani Centre for Excellence in Environmental Sciences, Manonmaniam Sundaranar University,
Alwarkurichi, 627 412, Tirunelveli, Tamil Nadu, India
c
Department of Biotechnology, St. Peter’s Institute of Higher Education and Research, Avadi, 600 054, Chennai, Tamil Nadu, India
d
Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, Muang, Chiang Mai, Thailand
e
Innovative Agriculture Research Center, Faculty of Agriculture, Chiang Mai University, Muang, Chiang Mai, Thailand

A R T I C L E I N F O A B S T R A C T

Keywords: Spodoptera litura are important agricultural pest, and they have a worldwide distribution. The microbiota gut is
Tobacco cutworm vital for the host with significant activity in metabolism. Lepidopteran species is one of the prominent orders in
16s rRNA insect group of phytophagous pests, and their linkage with microbes are presently practiced and others with
Sequencing
future perspectives. In this present investigation of gut microbiota isolation and identification from larvae of
Microbes
S. litura and to assess the midgut bacteria role of in promoting survival to pesticides. Based on the preliminary
Pesticides
screening, we screened three different bacterial species isolated from the gut microbial communities of S. litura,
viz. gram-positive bacteria Clostridium botulinum, Clostridium butyricum, gram-negative bacteria Pseudomonas
putida. Present study the detection of bacteria in the midgut by using general microbial technique and the 16s
rRNA sequence was used for characterizing the selected microbes. Besides, the bacterial DNA quality was tested
by using agarose gel electrophoresis techniques. Phylogenetic analysis using the neighbor-joining tree shows
similarity with other bacterial genera. And also pesticide tolerant ability was analyzed with isolated midgut
bacterial communities of the bioassay method. It concludes the C. botulinum bacterium was tested for its role in
protecting S. litura larvae against cypermethrin toxicity. The results displayed that S. litura survived well in the
combinations of cypermethrin along with C. botulinum. Pesticide metabolism in insects, helping to survive in
unfavorable environments.

1. Introduction anti-cancerous peptides (Chernysh et al., 2002).


Insect midgut is colonized by diverse microbes which is a result of
The gut of insects signifies a huge number of diversity of microbes. their interaction with their immediate environment (Walker et al.,
The microbial diversity in a species can be triggered by the existence of 1999). The midgut microbiota delivers a dual system where the syner­
diverse digestive enzymes, and also the ingested food source (Dillon and gistic works take place among the microbial and insect gut enzymes to
Dillon, 2004). Microbes play a vital role in the nutrition and physiology digest the leaf resources (Cornelis et al., 1982; Shi et al., 2013). The
of insect hosts (Nardiet et al., 2002). In general, gut microbiota also present study was mainly focused on amylase producing microbial
supports the pest by debasing insecticide and xenobiotics which are strains from insect gut since only a few types of research are available in
toxic to the pests (Xia et al., 2013). There has been rising enthusiasm for the literature (Breman et al., 2001; Aksoy et al., 2008; Coutinho-Abreu
knowledge on insect gut microbiota, as a potential source of novel et al., 2009). The selected microbes are hereditarily changed to create an
bioactive molecules, including antiviral, antimalarial, and anti-parasitic factor and then introduced into the midgut of insects,

* Corresponding author. Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, Muang, Chiang Mai, Thailand.
** Corresponding author.
E-mail addresses: skentomology@gmail.com (M.S. Shivakumar), patcharink26@gmail.com (P. Krutmuang).

https://doi.org/10.1016/j.bcab.2020.101758
Received 22 May 2020; Received in revised form 13 August 2020; Accepted 14 August 2020
Available online 15 August 2020
1878-8181/© 2020 Elsevier Ltd. All rights reserved.
S. Karthi et al. Biocatalysis and Agricultural Biotechnology 28 (2020) 101758

there they decline the mortality rate of malarial parasites to obstruct the 2.3. Characterization of morphological and biochemical features
pathogens transmitted vector inside the cycle, or decrease their vector
limit (Aksoy et al., 2008; Coutinho-Abreu et al., 2009). The biochemical and morphological characterization of the bacterial
Insects have a cosmopolitan distribution, occupying a variety of colonies was performed by the standard protocols followed by Bergey’s
ecological niches. This is made possible due to the endosymbionts, manual of determinative bacteriology. Further, the morphological as­
which help the insects to digest certain food thus playing a vital role in says were performed using gram staining kit. The biochemical charac­
the nutrition of hosts (Bourtzis and Miller, 2003). Endosymbionts help terization was executed by using Oxidase and Catalase assay.
the insects by providing vitamins, lipids, and essential amino acids
which are important for insect development (Douglas, 1998). 2.4. Gene sequencing of 16S rRNA
The gut microbiota of insects has been inherent for its dynamic
features such as i) biomass deconstruction ii) the nutrient biosynthesis. The gene sequencing assay was performed based on the adapted pro­
The dietary role of the endosymbiotic insect microorganisms has been tocol of Sambrook et al. (1989). The DNA isolates were preserved at –20 ◦ C
well studies by nourishing experiments with unbalanced or poor diets for further experiments. The amplification of 16s rRNA gene sequences
deficient vital nutrients (Douglas, 1998). The production of nutrients using PCR was performed with the standard primers 295267-F
and biomass both are fundamental functions of gut microbiota that can (5′ -TGCTGCAGAGAGTTTGATCCTGGCTCAG-3′ ) as the forward and
be exploited for biotechnology applications. 295268-R (5′ -CACGGATCCTACGGGTACCTTGTTACGACTT-3′ ) as a
In addition to providing nutrients to hosts, gut symbionts also protect reverse primer. Conditions of thermal cycler were fixed at 5 min at 95 ◦ C for
the insects, by metabolizing toxic xenobiotic chemicals and thus are the template DNA denaturation, thirty-six amplification cycles, and final
thought to play an important role in insecticide resistance in pests extension was maintained at 10 min with 72 ◦ C. Products of PCR were
(Whalon et al., 2008). However, the microbial transmission to the hosts isolated on Agarose gels (1%) followed by ethidium bromide staining and
will impact the symbiotic mediated resistance. Bacteria surviving in the observed under Ultra Violet (UV) light. After analyzing the products of PCR,
midgut of larvae display to join a similar part in certain hosts, though in they were subjected to gene sequencing. The acquired sequences were
other ways they decline the growth of pathogens and host mortality due utilized to execute the searches using BLAST tools of the NCBI Gen-Bank
to pathogen-induction(Broderick et al., 2009). The majority research database. Also, phylogenetic characterization of gene sequencing was
focusing on the interface between Bacillus thuringiensis and other mi­ performed for microbial characterization.
crobes surviving in the midgut of larvae depends on the mortality of
hosts as the variable assessment, and not pathway the growth of bacteria 2.5. Phylogenetic analysis
in tested and not tested hosts in establish to validate planned mecha­
nisms of mortality rate. Sequences of nucleotide (16S rRNA genes) were analyzed with Bio-
Regular screening of culture sovereign methods including Polymer­ Edit and assigned with Cluster W Software. A complete gene sequence
ase Chain Reaction (PCR) and DNA sequencing through metagenomics, of 16S rRNA including eight isolates of lepidopteran pests and their
which can deal with diversified microbiota. Though, microbial isolation twenty-seven carefully linked species were utilized in the analysis of
from pests by using standardized protocols of microbial techniques phylogenetics. The phylogenetic assay was analyzed using the neighbor-
needs broad research of the activities related to the activities of enzymes joining (NJ) method, conceded out using MEGA-6 software (Hall et al.,
and individual strain depiction in edict to investigate the concept of 1999). The NJ analysis was established on the Kimura2-parameter
individual isolates of bacteria for the wide applications of biotech­ assay. Gaps of alignment were taken as missing data. The phylogenetic
nology. Thus the present study aims to isolate and characterize the reliability was analyzed by boots-trap analysis with approximate repli­
major midgut microbiota derived from the tobacco cutworm larvae cates of 1000 using MEGA 6 software.
S. litura and investigating the role of midgut bacteria to the pesticide
survival. 2.6. Bacterial suspension preparation

2. Materials and methods Stock culture isolates of bacteria were shifted to new plates supple­
mented with Nutrient agar to attain each colony of the isolates. The
2.1. Insect culture individual colonies were transferred to freshly prepare Nutrient broth
and preserved at 37 ◦ C for 24 h. Further, the density of bacteria was
Larval cultures of S. litura were purchased from the National Bureau analyzed through Optical Density (OD) at 440 nm. Individual cultures
of Agricultural Important insects, Bangalore, India. The castor leaf was were spin at 3000 rpm for 10 min. Further, the pellet was re-suspended
provided as feed and preserved in sterile in-vitro conditions at Relative in 5 ml of sterilized Phosphate Buffer Solution (PBS) and the culture will
Humidity (RH) of 55% and constant Temperature (T) at 27±1 ◦ C lacking be utilized for further assays (Tamura et al., 2013).
any treatment. The 3rd instars of S. litura were utilized for further
experiments. 2.7. Bioassay

Bioassays were performed based on the adapted methodology


2.2. Isolation of gut microbiota (Vasantha-Srinivasan et al., 2019) and the isolated midgut bacterial
strains using the leaf dip method against the third instar of S. litura. For
The whole gut from the S. litura larvae was immobilized surface experiments, the leaves of the castor plant were surface-sterilized
sterilized by 70% ethanol and was dichotomized under a sterile envi­ washing with distilled water. The cypermethrin (Sigma-Aldrich, PES­
ronment in laminar airflow to get rid of the gut. The gut was homoge­ TANAL®, analytical standard) dosage was prepared in the recom­
nized in 1 mL of Phosphate Buffer Solution (PBS) (Broderick et al., mended dosage of 0.2 g a.i /hectare and the bacterial strains were using
2004). Then larval gut was serially diluted in 10− 1 to 10− 7. After serial (Clostridium botulinum) different concentrations (5, 10, and 15 ml/l).The
dilution 0.1 mL of the solution was taken using a sterile micropipette and combination of pesticides (Cypermethrin) and bacterial culture selected
cultured using the medium supplemented with Nutrient agar. Further, with based on the concentration low range (10 μl/l +5 ml/l), mid-range
the cultures were then gestated at 37 ◦ C for one day. The isolated col­ (50 μl/l + 10 ml/l) and high range (100 μl/l + 15 ml/l) in bioassay with
onies of bacteria were further characterized for their morphological and combination of mixtures. Three experimental groups were taken they
biochemical characters by following standard Key of Bergey’s Manual of are, treated with indifferent concentration1.Control 2. Cypermethrin3.
Determinative Bacteriology. Clostridium botulinum + Cypermethrin. For individual dosage, twenty

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S. Karthi et al. Biocatalysis and Agricultural Biotechnology 28 (2020) 101758

3rd instar larvae of S. litura was used and control was treated as water. 3.3. DNA isolation
The experiments were done in triplicate and mortality data were
recorded after the treatment for 24, 48, and 72 h of post-treatment. The The eight isolated overnight growth bacterial culture was taken from
lethal concentrations, LC50 and LC90, and their 95% confidence limit the nutrient-rich broth and the presence of bacterial DNA was checked
were calculated with Probit analysis (Minitab®17). by using agarose gel electrophoresis method and the genomic DNA
bands were visualized under UV transilluminator. With the help of the
gel documentation method the genomic DNA bands were imaged
2.8. Statistical analysis (Fig. 2).

Experimental data from mortality were exposed to the analysis of


3.4. PCR amplification and 16s rRNA sequence analysis
variance (ANOVA of arcsine) and data were expressed as a mean of five
replicates. Significant differences between treatment groups were
295267F- 5′ GTGCTGCAGAGAGTTTGATCCTGGCTCAG 3’
examined by Tukey’s multiple range test (significance at p < 0.05) using
295268R- 3′ CACGGATCCTACGGGTACCTTGTTACGACTT 5’
Minitab®17 programs.
The eight colonies were isolated and the 16s rRNA universal primers
are used to amplifying 3 bacterial DNA strains (Clostridium butyricum,
3. Results Pseudomonas putida, Clostridium botulinum) were amplified. In the PCR
technique, we amplified the PCR product that was observed under the
3.1. 1. bacterial characterization UV transilluminator. The sequence was assembled using the sequencer
BLAST program to deposit in Clostridium butyricum, Pseudomonas putida,
The growth of bacteria was observed post 48h of incubation of insect Clostridium botulinum the gene bank the show’s similarity with the cor­
homogenized midgut in nutrient agar media plates for serial dilution responding microorganism in the study with the help of 1 kb ladder the
ranging from 10− 1 to 10− 7. Bacterial growth observed plates in 10− 1 to amplified PCR product was compared their size (Fig. 3).
10− 7 concentration. The individual colonies of bacteria were screened
on the size basis and morphology from the culture agar plates partic­
3.5. Phylogenetic analysis
ularly10− 5,10− 6, 10− 7concentration (Fig. 1).
Align the sequence from the database with the help of the MEGA 6.0
3.2. 2. morphological and biochemical characterization of gut bacteria by software program the phylogenetic tree was constructed (Fig. 4).
gram staining
3.6. Bioassay
The isolates characterization was performed based on Bergey’s
Manual of Determinative Bacteriology and the obtained results were The results showed moderate toxicity levels post 24, 48, and 72 h of
tabulated (Table 1). observation. The LC50 and LC90values of S.litura show high toxicity in 24

Fig. 1. Isolation of bacterial colonies (Clostridium butyricum, Pseudomonas putida, Clostridium botulinum) in the midgut of S. litura larvae. From the preliminary
screening of eight colonies three isolates were selected and cultured in the nutrient agar plates in the three dilutions such as (A) Clostridium butyricum 10− 5, (B)
Pseudomonas putida-10− 6, (C) Clostridium botulinum-10− 7.

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S. Karthi et al. Biocatalysis and Agricultural Biotechnology 28 (2020) 101758

Table: 1
Morphological and biochemical characterization of the isolates was done according to Bergey’s Manual of Determinative Bacteriology. Were RS1 indicates Clostridium
butyricum, RS2 indicates Pseudomonas putida and RS3 denotes Clostridium botulinum respectively and (+) Positive; (− ) Negative; (*) Late Reaction.
Morphology and Characterization test Colony 1 Colony 2 Colony 3 Colony 4 (RS1) Colony 5 Colony 6 (RS2) Colony7 (RS3) Colony8

Gram Staining + + + + + – + +
Shape Cocci Cocci Cocci Rod Cocci Rod Rod Cocci
Indole Test – – – – – – – –
Methyl Red + + + + + + + +
VP Test + + + * * * + *
Oxidase Test + + + + + + + +
Hydrogen Peroxide (H2O2) + + + + + + + +

respectively. Despite there is no mortality rate was observed in the


control (Table .2).

4. Discussion

The midgut microbes of insects play a vital role in the cellular


mechanisms and establish a vital part in insect resistance to pesticides
(Naik et al., 2010). The midgut microbial groups of S. litura larvae from
the diverse location displayed that the environs have a desirable bearing
on the group of microorganisms in the S. litura larval midgut, Clostridium
butyricum, Pseudomonas putida, Clostridium botulinum, have been re­
ported to be fairly prevailing, while another genesis also a portion of the
insect gut microbial groups (Moar et al., 1995). There is a vital gap in
data given the significance of such microbes to other pests. Besides, the
dependence until recently on culture-based methods for the study of
microbial symbionts has likely provided an incomplete view of the
phylogenetic diversity of bacteria within the insect midgut (Indir­
agandhi et al., 2007). The alignment of the bacterial group is lightly
depending on both biotic and abiotic factors including food availability
and climatic conditions. Most bacteria are transitory organisms native to
Fig. 2. Genomic DNA was isolated from the presence of midgut bacteria. Lane the soil or the guts of animals (Derakshani et al., 2001). The tobacco
1:10− 5 Colony1; Lane 2:10− 6 Colony 2; Lane 3:10− 6 Colony 3; Lane 4:10− 6 cutworm microbial groups are highly dynamic, shifting over time, and
Colony 4; Lane 5:10− 6 Colony 5; Lane 6: 10− 7 Colony 6; Lane 7: 10− 7 Colony 7; also response to get changes in important biological patterns of insect.
Lane 8: 10− 7 Colony 8. However, in this present research, there is a lack of growth in bac­
teria was pragmatic in the insect hemocoel which evidences that larval
mortality is chiefly due to the production of toxins and not due to the
admittance of Clostridium botulinum in the hemocoel. The implication of
this research includes both bids and primary data of enteric microbes in
the pests for devious tactics to the pest management by connecting their
native communities. The peritrophic membrane of pests might influence
simply as a physiological barrier that retains the bolus of the food from
unswervingly contacting the epithelial cells of the midgut thus giving
shield against the injury created mechanically.
In this present research, three bacterial colonies were determined in
the midgut of S. litura. Characterization of insect microflora of this
research might be attributed to the specimen’s basis and also the culture
media. The selection force of the in-vitro conditions may decline the
bacterial attainment at the stages of larvae (Favia et al., 2007). The
bacterial communities in the midgut of bacterial isolated in 10− 1 to 10− 7
concentration and 8 colonies were identified in morphological and
biochemical characterization. Gram staining of all the cultures was
complete for all the strains to decide and identification of Gram-positive
or Gram-negative. Also, their morphology was determined by the iso­
lated several cultures of midgut microbiota from the S. litura. The eight
Fig. 3. PCR Amplification product of S. litura larval midgut bacteria Well 1:
marker (1 kb) Lane 1: RS 1 Clostridium butyricum, (10− 6) 4th Colony; Lane 2: RS
isolated cultures were present in gram-positive or gram-negative. These
2 Pseudomonas putida, (10− 6) 6th Colony and Lane 3: RS 3 Clostridium botulinum cultures were rod and cocci shaped bacteria. All the culture were tested
(10− 7) 7th Colony respectively. in the indole test was experimental in a negative result, MR-VP test for
positive result Oxidase test and hydrogen peroxide (H2O2) test also
h as compared with 48 and 72 h. The Lethal concentration (LC50 and positive results. The genomic DNA was isolated from 8 different col­
LC90) value post 24 h treatment displayed 13.9286 μg/ml and 19.1042 onies, the isolated colonies were identified using 16s rRNA techniques.
μg/ml respectively and it is significant (F4,20 = 17.32; P < 0.0001) with Our results show three colonies were amplified and the amplified col­
the lethal dosage obtained after 48 h(LC50-14.8231 μg/ml and LC90- onies, we also sequenced from 16S rRNA gene for individual isolates to
27.0021 μg/ml) and 72 h(LC50-16.3224 and LC90-32.8811 μg/ml endorse the isolation of different isolates. As an outcome of all charac­
terization assays and sequencing procedures, midgut microbial isolates

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S. Karthi et al. Biocatalysis and Agricultural Biotechnology 28 (2020) 101758

Fig. 4. Phylogenetic tree (NJ) was constructed for the partial 16s rRNA gene of isolates bacteria culture from larvae midgut. (A) Clostridium butyricum AY072928.1.
1, (B) Pseudomonas putida-KM488442.1 and (C) Clostridium botulinum AF396966.2.

Table 2
Third instar larvae of S. litura after treatment with Cypermethrin.
Insecticide No. of insect LC50 (μg/ml)(LCL-UCL) LC90 (μg/ml)(LCL-UCL) χ2 Df

Cypermethrin 270 0.00012 0.0019 0.116 2


Treatment:24 h 270 13.9286(11.16316–14.2016) 19.1042(18.5672–21.8206) 0.261 2
48 h 270 14.82131(11.28163–15.16210) 27.0021(25.8231–30.1681) 6.284 2
72 h 270 16.3224(13.1121–19.2480) 32.8811(29.1684–35.0032) 3.168 2

of S. litura to identify as Clostridium butyricum, Pseudomonas putida, and isolates from the microbial gut-flora of insects that used up them. This
Clostridium botulinum. Phylogenetic characterization through the specifies that the microbes are essentially from the food plants
16S-rRNA gene also ropes these detections. Similarly, microbial di­ consumed. This is reliable with the postulation that locusts Schistocerca
versity alignment has been widely illustrated in diverse insect pests gregaria derived from their ingested microbiota from plants (Dillon and
(Broderick et al., 2004).The midgut microbial groups of Helicoverpa Dillon, 2004). Locusts own close by indigenous microbial communities
armigera Hub. Larvae from diversified regions recommended that bio­ serene variety of species regularly stumble upon their surroundings. In a
logical surroundings have a substantial deportment on the midgut mi­ similar study reported that Enterobacter agglomerans and Enterococcus sp.
crobial group. In Lactococcus and Enterococcus have been studied to be derived from the midgut part of the drifting grasshopper Melanopluss
fairly leading, though alternative genera including Acinetobacter, Fla­ anguinipes, the isolation, and identification gut microbes used as a bio­
vobacterium, and Stenotro phomonasis also the source of midgut microbial pesticide against pests (Mead et al., 1998).
group(Broderick et al., 2004). Similarly, considerable intra-specific de­ The toxicity of some phytochemicals including pine terpenes derived
viations were observed in the microbial midgut flora of the H. armigera from its resin is a major feature influential the comparatively threatened
field populations indicating that the inter biological nature of larvae can species diversity in the beetle guts of respect to the Anoplophora. The
response to deviate exterior settings like novel microbial ingestion and observed stability in the structure of the bacterial group at a prominent
phyto-compounds derived from the surface area of the leaves (Xiang level of toxicity in diverse pests. This may designate that its supreme
et al., 2006). Though potential impacts of food, environs, and symbionts are derived environmental fleeting bacteria, minimally some
intra-specific gut microbial deviations fit bacterial order Bacillales and of them might play a significant part in affecting insect physiology
belongs to the family Entero bacteriaceae were existed in all the species, (Sudakaran et al., 2012). In specific, the ascendancy of Gammaproteo
and these might be the collective members of the midgut larval micro­ Enterobacteriaceae bacteria in both adult and larvae forms recommends
flora of H. armigera. Despite, the importance of physiological functions that they are continual fractions of the microbial groups and may be
and nutrition of H. armigera microbes. The pest midgut is serene of favorable to the fitness of the hosts due to diverse knacks to ferment and
regenerative and epithelial cells and it is accountable for secretion, ab­ hydrolyze carbohydrates, catalyzing nitrogen fixation, and yield pher­
sorption, and digestion (Rost-Roszkowska et al., 2010). There is ami­ omones and vitamins (Sharon et al., 2010).
crobial similarity derived from the food sources of the plants and their It must be eminent that microbial groups of phylogenies have been

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The authors declare that they have no known competing financial Commensal bacteria play a role in mating preference of Drosophila melanogaster.
interests or personal relationships that could have appeared to influence P. Natl. Acad. Sci. USA. 107, 20051–20056.
Shi, W., Xie, S., Chen, X., Sun, S., Zhou, X., 2013. Comparative genomic analysis of the
the work reported in this paper. endosymbionts of herbivorous insects reveals eco-environmental adaptations:
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stability of the symbiotic midgut microbiota in European firebugs, Pyrrhocorisapterus
We would like to thank the Department of Biotechnology, Periyar (Hemiptera, Pyrrhocoridae). Mol. Ecol. 21, 6134–6151.
University, Salem, Tamil Nadu, India for providing the infrastructure for Tamura, K., Stecher, G., Peterson, D., Filipski, A., Kumar, S., 2013. Mega 6: molecular
evolutionary genetics analysis version 6.0. Mol. Biol. Evol. 30, 2725–2729.
carrying out this research work. Also, this research work was partially Vasantha-Srinivasan, P., Karthi, S., Chellappandian, M., Ponsankar, A., Thanigaivel, A.,
supported by Chiang Mai University, Thailand. Senthil-Nathan, S., Chandramohan, D., Ganesan, R., 2019. Aspergillus flavus (Link)
toxins reduces the fitness of dengue vector Aedesaegypti (Linn.) and their non-target
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