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Keywords: Spodoptera litura are important agricultural pest, and they have a worldwide distribution. The microbiota gut is
Tobacco cutworm vital for the host with significant activity in metabolism. Lepidopteran species is one of the prominent orders in
16s rRNA insect group of phytophagous pests, and their linkage with microbes are presently practiced and others with
Sequencing
future perspectives. In this present investigation of gut microbiota isolation and identification from larvae of
Microbes
S. litura and to assess the midgut bacteria role of in promoting survival to pesticides. Based on the preliminary
Pesticides
screening, we screened three different bacterial species isolated from the gut microbial communities of S. litura,
viz. gram-positive bacteria Clostridium botulinum, Clostridium butyricum, gram-negative bacteria Pseudomonas
putida. Present study the detection of bacteria in the midgut by using general microbial technique and the 16s
rRNA sequence was used for characterizing the selected microbes. Besides, the bacterial DNA quality was tested
by using agarose gel electrophoresis techniques. Phylogenetic analysis using the neighbor-joining tree shows
similarity with other bacterial genera. And also pesticide tolerant ability was analyzed with isolated midgut
bacterial communities of the bioassay method. It concludes the C. botulinum bacterium was tested for its role in
protecting S. litura larvae against cypermethrin toxicity. The results displayed that S. litura survived well in the
combinations of cypermethrin along with C. botulinum. Pesticide metabolism in insects, helping to survive in
unfavorable environments.
* Corresponding author. Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, Muang, Chiang Mai, Thailand.
** Corresponding author.
E-mail addresses: skentomology@gmail.com (M.S. Shivakumar), patcharink26@gmail.com (P. Krutmuang).
https://doi.org/10.1016/j.bcab.2020.101758
Received 22 May 2020; Received in revised form 13 August 2020; Accepted 14 August 2020
Available online 15 August 2020
1878-8181/© 2020 Elsevier Ltd. All rights reserved.
S. Karthi et al. Biocatalysis and Agricultural Biotechnology 28 (2020) 101758
there they decline the mortality rate of malarial parasites to obstruct the 2.3. Characterization of morphological and biochemical features
pathogens transmitted vector inside the cycle, or decrease their vector
limit (Aksoy et al., 2008; Coutinho-Abreu et al., 2009). The biochemical and morphological characterization of the bacterial
Insects have a cosmopolitan distribution, occupying a variety of colonies was performed by the standard protocols followed by Bergey’s
ecological niches. This is made possible due to the endosymbionts, manual of determinative bacteriology. Further, the morphological as
which help the insects to digest certain food thus playing a vital role in says were performed using gram staining kit. The biochemical charac
the nutrition of hosts (Bourtzis and Miller, 2003). Endosymbionts help terization was executed by using Oxidase and Catalase assay.
the insects by providing vitamins, lipids, and essential amino acids
which are important for insect development (Douglas, 1998). 2.4. Gene sequencing of 16S rRNA
The gut microbiota of insects has been inherent for its dynamic
features such as i) biomass deconstruction ii) the nutrient biosynthesis. The gene sequencing assay was performed based on the adapted pro
The dietary role of the endosymbiotic insect microorganisms has been tocol of Sambrook et al. (1989). The DNA isolates were preserved at –20 ◦ C
well studies by nourishing experiments with unbalanced or poor diets for further experiments. The amplification of 16s rRNA gene sequences
deficient vital nutrients (Douglas, 1998). The production of nutrients using PCR was performed with the standard primers 295267-F
and biomass both are fundamental functions of gut microbiota that can (5′ -TGCTGCAGAGAGTTTGATCCTGGCTCAG-3′ ) as the forward and
be exploited for biotechnology applications. 295268-R (5′ -CACGGATCCTACGGGTACCTTGTTACGACTT-3′ ) as a
In addition to providing nutrients to hosts, gut symbionts also protect reverse primer. Conditions of thermal cycler were fixed at 5 min at 95 ◦ C for
the insects, by metabolizing toxic xenobiotic chemicals and thus are the template DNA denaturation, thirty-six amplification cycles, and final
thought to play an important role in insecticide resistance in pests extension was maintained at 10 min with 72 ◦ C. Products of PCR were
(Whalon et al., 2008). However, the microbial transmission to the hosts isolated on Agarose gels (1%) followed by ethidium bromide staining and
will impact the symbiotic mediated resistance. Bacteria surviving in the observed under Ultra Violet (UV) light. After analyzing the products of PCR,
midgut of larvae display to join a similar part in certain hosts, though in they were subjected to gene sequencing. The acquired sequences were
other ways they decline the growth of pathogens and host mortality due utilized to execute the searches using BLAST tools of the NCBI Gen-Bank
to pathogen-induction(Broderick et al., 2009). The majority research database. Also, phylogenetic characterization of gene sequencing was
focusing on the interface between Bacillus thuringiensis and other mi performed for microbial characterization.
crobes surviving in the midgut of larvae depends on the mortality of
hosts as the variable assessment, and not pathway the growth of bacteria 2.5. Phylogenetic analysis
in tested and not tested hosts in establish to validate planned mecha
nisms of mortality rate. Sequences of nucleotide (16S rRNA genes) were analyzed with Bio-
Regular screening of culture sovereign methods including Polymer Edit and assigned with Cluster W Software. A complete gene sequence
ase Chain Reaction (PCR) and DNA sequencing through metagenomics, of 16S rRNA including eight isolates of lepidopteran pests and their
which can deal with diversified microbiota. Though, microbial isolation twenty-seven carefully linked species were utilized in the analysis of
from pests by using standardized protocols of microbial techniques phylogenetics. The phylogenetic assay was analyzed using the neighbor-
needs broad research of the activities related to the activities of enzymes joining (NJ) method, conceded out using MEGA-6 software (Hall et al.,
and individual strain depiction in edict to investigate the concept of 1999). The NJ analysis was established on the Kimura2-parameter
individual isolates of bacteria for the wide applications of biotech assay. Gaps of alignment were taken as missing data. The phylogenetic
nology. Thus the present study aims to isolate and characterize the reliability was analyzed by boots-trap analysis with approximate repli
major midgut microbiota derived from the tobacco cutworm larvae cates of 1000 using MEGA 6 software.
S. litura and investigating the role of midgut bacteria to the pesticide
survival. 2.6. Bacterial suspension preparation
2. Materials and methods Stock culture isolates of bacteria were shifted to new plates supple
mented with Nutrient agar to attain each colony of the isolates. The
2.1. Insect culture individual colonies were transferred to freshly prepare Nutrient broth
and preserved at 37 ◦ C for 24 h. Further, the density of bacteria was
Larval cultures of S. litura were purchased from the National Bureau analyzed through Optical Density (OD) at 440 nm. Individual cultures
of Agricultural Important insects, Bangalore, India. The castor leaf was were spin at 3000 rpm for 10 min. Further, the pellet was re-suspended
provided as feed and preserved in sterile in-vitro conditions at Relative in 5 ml of sterilized Phosphate Buffer Solution (PBS) and the culture will
Humidity (RH) of 55% and constant Temperature (T) at 27±1 ◦ C lacking be utilized for further assays (Tamura et al., 2013).
any treatment. The 3rd instars of S. litura were utilized for further
experiments. 2.7. Bioassay
2
S. Karthi et al. Biocatalysis and Agricultural Biotechnology 28 (2020) 101758
3rd instar larvae of S. litura was used and control was treated as water. 3.3. DNA isolation
The experiments were done in triplicate and mortality data were
recorded after the treatment for 24, 48, and 72 h of post-treatment. The The eight isolated overnight growth bacterial culture was taken from
lethal concentrations, LC50 and LC90, and their 95% confidence limit the nutrient-rich broth and the presence of bacterial DNA was checked
were calculated with Probit analysis (Minitab®17). by using agarose gel electrophoresis method and the genomic DNA
bands were visualized under UV transilluminator. With the help of the
gel documentation method the genomic DNA bands were imaged
2.8. Statistical analysis (Fig. 2).
Fig. 1. Isolation of bacterial colonies (Clostridium butyricum, Pseudomonas putida, Clostridium botulinum) in the midgut of S. litura larvae. From the preliminary
screening of eight colonies three isolates were selected and cultured in the nutrient agar plates in the three dilutions such as (A) Clostridium butyricum 10− 5, (B)
Pseudomonas putida-10− 6, (C) Clostridium botulinum-10− 7.
3
S. Karthi et al. Biocatalysis and Agricultural Biotechnology 28 (2020) 101758
Table: 1
Morphological and biochemical characterization of the isolates was done according to Bergey’s Manual of Determinative Bacteriology. Were RS1 indicates Clostridium
butyricum, RS2 indicates Pseudomonas putida and RS3 denotes Clostridium botulinum respectively and (+) Positive; (− ) Negative; (*) Late Reaction.
Morphology and Characterization test Colony 1 Colony 2 Colony 3 Colony 4 (RS1) Colony 5 Colony 6 (RS2) Colony7 (RS3) Colony8
Gram Staining + + + + + – + +
Shape Cocci Cocci Cocci Rod Cocci Rod Rod Cocci
Indole Test – – – – – – – –
Methyl Red + + + + + + + +
VP Test + + + * * * + *
Oxidase Test + + + + + + + +
Hydrogen Peroxide (H2O2) + + + + + + + +
4. Discussion
4
S. Karthi et al. Biocatalysis and Agricultural Biotechnology 28 (2020) 101758
Fig. 4. Phylogenetic tree (NJ) was constructed for the partial 16s rRNA gene of isolates bacteria culture from larvae midgut. (A) Clostridium butyricum AY072928.1.
1, (B) Pseudomonas putida-KM488442.1 and (C) Clostridium botulinum AF396966.2.
Table 2
Third instar larvae of S. litura after treatment with Cypermethrin.
Insecticide No. of insect LC50 (μg/ml)(LCL-UCL) LC90 (μg/ml)(LCL-UCL) χ2 Df
of S. litura to identify as Clostridium butyricum, Pseudomonas putida, and isolates from the microbial gut-flora of insects that used up them. This
Clostridium botulinum. Phylogenetic characterization through the specifies that the microbes are essentially from the food plants
16S-rRNA gene also ropes these detections. Similarly, microbial di consumed. This is reliable with the postulation that locusts Schistocerca
versity alignment has been widely illustrated in diverse insect pests gregaria derived from their ingested microbiota from plants (Dillon and
(Broderick et al., 2004).The midgut microbial groups of Helicoverpa Dillon, 2004). Locusts own close by indigenous microbial communities
armigera Hub. Larvae from diversified regions recommended that bio serene variety of species regularly stumble upon their surroundings. In a
logical surroundings have a substantial deportment on the midgut mi similar study reported that Enterobacter agglomerans and Enterococcus sp.
crobial group. In Lactococcus and Enterococcus have been studied to be derived from the midgut part of the drifting grasshopper Melanopluss
fairly leading, though alternative genera including Acinetobacter, Fla anguinipes, the isolation, and identification gut microbes used as a bio
vobacterium, and Stenotro phomonasis also the source of midgut microbial pesticide against pests (Mead et al., 1998).
group(Broderick et al., 2004). Similarly, considerable intra-specific de The toxicity of some phytochemicals including pine terpenes derived
viations were observed in the microbial midgut flora of the H. armigera from its resin is a major feature influential the comparatively threatened
field populations indicating that the inter biological nature of larvae can species diversity in the beetle guts of respect to the Anoplophora. The
response to deviate exterior settings like novel microbial ingestion and observed stability in the structure of the bacterial group at a prominent
phyto-compounds derived from the surface area of the leaves (Xiang level of toxicity in diverse pests. This may designate that its supreme
et al., 2006). Though potential impacts of food, environs, and symbionts are derived environmental fleeting bacteria, minimally some
intra-specific gut microbial deviations fit bacterial order Bacillales and of them might play a significant part in affecting insect physiology
belongs to the family Entero bacteriaceae were existed in all the species, (Sudakaran et al., 2012). In specific, the ascendancy of Gammaproteo
and these might be the collective members of the midgut larval micro Enterobacteriaceae bacteria in both adult and larvae forms recommends
flora of H. armigera. Despite, the importance of physiological functions that they are continual fractions of the microbial groups and may be
and nutrition of H. armigera microbes. The pest midgut is serene of favorable to the fitness of the hosts due to diverse knacks to ferment and
regenerative and epithelial cells and it is accountable for secretion, ab hydrolyze carbohydrates, catalyzing nitrogen fixation, and yield pher
sorption, and digestion (Rost-Roszkowska et al., 2010). There is ami omones and vitamins (Sharon et al., 2010).
crobial similarity derived from the food sources of the plants and their It must be eminent that microbial groups of phylogenies have been
5
S. Karthi et al. Biocatalysis and Agricultural Biotechnology 28 (2020) 101758
normally spotted in the diversified insect gut orders and the diets of the Broderick, N.A., Raffa, K.F., Goodman, R.M., Handelsman, J., 2004. Census of the
bacterial community of the gypsy moth larval midgut by using culturing and culture-
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Declaration of competing interest Sambrook, J., Fritsch, E.F., Maniatis, T., 1989. Molecular Cloning: A Laboratory Manual.
Cold Spring Harbor, New York.
Sharon, G., Segal, D., Ringo, J.M., Hefetz, A., Zilber-Rosenberg, I., Rosenberg, E., 2010.
The authors declare that they have no known competing financial Commensal bacteria play a role in mating preference of Drosophila melanogaster.
interests or personal relationships that could have appeared to influence P. Natl. Acad. Sci. USA. 107, 20051–20056.
Shi, W., Xie, S., Chen, X., Sun, S., Zhou, X., 2013. Comparative genomic analysis of the
the work reported in this paper. endosymbionts of herbivorous insects reveals eco-environmental adaptations:
biotechnology applications. PLoS Genet. 9 (1), e1003131 https://doi.org/10.1371/
Acknowledgments journal.pgen.1003131.
Sudakaran, S., Salem, H., Kost, C., Kaltenpoth, M., 2012. Geographical and ecological
stability of the symbiotic midgut microbiota in European firebugs, Pyrrhocorisapterus
We would like to thank the Department of Biotechnology, Periyar (Hemiptera, Pyrrhocoridae). Mol. Ecol. 21, 6134–6151.
University, Salem, Tamil Nadu, India for providing the infrastructure for Tamura, K., Stecher, G., Peterson, D., Filipski, A., Kumar, S., 2013. Mega 6: molecular
evolutionary genetics analysis version 6.0. Mol. Biol. Evol. 30, 2725–2729.
carrying out this research work. Also, this research work was partially Vasantha-Srinivasan, P., Karthi, S., Chellappandian, M., Ponsankar, A., Thanigaivel, A.,
supported by Chiang Mai University, Thailand. Senthil-Nathan, S., Chandramohan, D., Ganesan, R., 2019. Aspergillus flavus (Link)
toxins reduces the fitness of dengue vector Aedesaegypti (Linn.) and their non-target
toxicity against aquatic predator. Microb. Pathog. 128, 281–287.
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system of the slug Derocerasreticulatumare not required for protein digestion. Soil
Supplementary data to this article can be found online at https://doi. Biol. Biochem. 31, 1387–1394.
Whalon, M.E.D., Mota-Sanchez, Hollingsworth, 2008. Global Pesticide Resistance in
org/10.1016/j.bcab.2020.101758. Arthropods. CAB International, Oxfordshire, UK).
Xiang, H., Fang, G., Wei, S., Jia, J., Huang, X., Xia, M., Zhou, Z., Ping Zhao, L., Ping
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