05/07/2020 NCBI Blast:AF028688:Methanobacterium bryantii strain...

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BLAST ® » Global Alignment » results for RID-G3D645MD114

Job Title AF028688:Methanobacterium bryantii strain... ...

RID G3D645MD114 Search expires on 07-06 19:08 pm
Program Needleman-Wunsch alignment of two sequences
Query ID AF028688.1 (nucleic acid)
Query Descr Methanobacterium bryantii strain RiH2 16S ribosomal RNA gene, complete sequence ...
Query Length 1476
Subject ID NR_074235.1 (nucleic acid)
Subject Descr Methanobrevibacter smithii ATCC 35061 strain PS 16S ribosomal RNA, complete sequence ...
Subject Length 1475

Descriptions

Description Score Percent Accession

Ident
Methanobrevibacter smithii ATCC 35061 strain PS 16S ribosomal RNA, complete
2221 90.00% NR_074235.1
sequence

Graphic Summary

Distribution of the top 1 Blast Hits on 1 subject sequences

Query

1 250 500 750 1000 1250

Alignments
Alignment view Pairwise CDS feature Restore defaults

Methanobrevibacter smithii ATCC 35061 strain PS 16S ribosomal RNA, complete sequence
Sequence ID: NR_074235.1 Length: 1475 Number of Matches: 1
Range 1: 1 to 1475

NW Score Identities Gaps Strand Frame

2221 1334/1478(90%) 5/1478(0%) Plus/Plus

Query 1 CTTCCGGTTGATCCCGCCGGAGGCCACTGCTTTTGGGGTTCGATTAAGCCATGCAAGTTG 60
||| | ||||||| | | || || |||||| ||||| |||||||||||||||||||| |
Sbjct 1 TTCTGTTTGATCCTGGCAGATGCTACTGCTATTGGGATTCGATTAAGCCATGCAAGTCG 59
Query 61 AACGAATCTTCGGATTCGTGGCGAACGGCTCAGTAACACGTGGATAACCTGCCCTTAGGA 120
||||| | || || | ||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 60 AACGAGT-TTAGGCT-CGTGGCGTACGGCTCAGTAACACGTGGATAACCTACCCTTAGGA 117
Query 121 CTGGGATAACCCTGGGAAACTGGGGATAATACCGGATATTTAGGAGTTCCTGGAATGGTC 180
|||||||||||||||||||||||||||||||| ||||| | |||||| ||||||
Sbjct 118 CTGGGATAACCCTGGGAAACTGGGGATAATACTGGATAGGCAATTATTCCTGTAATGGTT 177
Query 181 TTCTATTTAAATGTTCAGGCGCCTAAGGATGGATCTGCGGCAGATTAGGTAGTTGGTGGG 240
|| | |||||||||| ||||||||||||| |||||||| ||||||||||||||| |
Sbjct 178 TTTTGTTTAAATGTTTTTTCGCCTAAGGATGGGTCTGCGGCCGATTAGGTAGTTGGTTAG 237
Query 241 GTAATGGCCCACCAAGCCTTTGATCTGTACGGGTTGTGAGAGCAAGAGCCCGGAGATGGA 300
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 238 GTAATGGCTTACCAAGCCTTTGATCGGTACGGGTTGTGAGAGCAAGAGCCCGGAGATGGA 297
Query 301 ACCTGAGACAAGGTTCCAGGCCCTACGGGGCGCAGCAGGCGCGAAACCTCCGCAATGCAC 360
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 298 ACCTGAGACAAGGTTCCAGGCCCTACGGGGTGCAGCAGGCGCGAAACCTCCGCAATGTGA 357
Query 361 GAAAGTGCGACGGGGGGACCCCAAGTGCCACTCTTAACGGGGTGGCTTTTTTTGAGTGTA 420
|||| |||||||||||| ||||||||||| |||||||||| |||||||| | ||||||

https://blast.ncbi.nlm.nih.gov/Blast.cgi 1/3
05/07/2020 NCBI Blast:AF028688:Methanobacterium bryantii strain...
Sbjct 358 GAAATCGCGACGGGGGGATCCCAAGTGCCATTCTTAACGGGATGGCTTTTCATTAGTGTA 417
Query 421 AAAAGCTTTGAGAATAAGAGCTGGGCAAGACCGGTGCCACCCGCCGCGGTAACACCGGCA 480
|| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 418 AAGAGCTTTTGGAATAAGAGCTGGGCAAGACCGGTGCCAGCCGCCGCGGTAACACCGGCA 477
Query 481 GCTCAAGTGGTGGCCATTTTTATTGGGCCTAAAGCGTTCGTAGCCGGCTTGATAAGTCTC 540
|||| |||||| || ||||||||||||||||||||| ||||||||| || |||||||||
Sbjct 478 GCTCTAGTGGTAGCAGTTTTTATTGGGCCTAAAGCGTCCGTAGCCGGTTTAATAAGTCTC 537
Query 541 TGGTGAAATCCCATAGCTTAACTGTGGGAATTGCTGGAGATACTATTAGGCTTGAGGCCG 600
||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 538 TGGTGAAATCCTGCAGCTTAACTGTGGGAATTGCTGGAGATACTATTAGACTTGAGATCG 597
Query 601 GGAGAGGTTAGGGGTACTCCCAGGGTAGGGGTGAAATCCTATAATCCTGGGAGGACCACC 660
||||||||||| |||||||||||||||| |||||||| || |||||||||||||||| ||
Sbjct 598 GGAGAGGTTAGAGGTACTCCCAGGGTAGAGGTGAAATTCTGTAATCCTGGGAGGACCGCC 657
Query 661 TGTGGCGAAGGCGCCTAACTGGAACGGACCTGACGGTGAGTAACGAAAGCCAGGGGCGCG 720
||| ||||||||| || ||||||||| ||||||||||| |||||||| |||||||||
Sbjct 658 TGTTGCGAAGGCGTCTGACTGGAACGATTCTGACGGTGAGGGACGAAAGCTAGGGGCGCG 717
Query 721 AACCGGATTAGATACCCGGGTAGTCCTGGCCGTAAACGATGCGGACTTGGTGTTGGAATG 780
||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||
Sbjct 718 AACCGGATTAGATACCCGGGTAGTCCTAGCTGTAAACGATGCGGACTTGGTGTTGGGGTG 777
Query 781 GCTTCGAGCTGCTCCAGTGCCGAAGGGAAGCTGTTAAGTCCGCCGCCTGGGAAGTACGGT 840
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GCTTTGAGCTGTCCCAGTGCCGAAGGGAAGCTGTTAAGTCCGCCGCCTGGGAAGTACGGT 837
Query 841 CGCAAGACTGAAACTTAAAGGAATTGGCGGGGGAGCACCACAACGCGTGGAGCCTGCGGT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CGCAAGACTGAAACTTAAAGGAATTGGCGGGGGAGCACCACAACGCGTGGAGCCTGCGGT 897
Query 901 TTAATTGGATTCAACGCCGGACATCTCACCAGGGGCGACAGCAGAATGATGGCCAGGTTG 960
|||||||||||||||||||||||||||||||| ||||||||| | ||||| |||||||||
Sbjct 898 TTAATTGGATTCAACGCCGGACATCTCACCAGAGGCGACAGCTGTATGATAGCCAGGTTG 957
Query 961 ACGACCTTGCTTGACAAGCTGAGAGGAGGTGCATGGCCGCCGTCAGCTCGTACCGTGAGG 1020
| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 ATGACTTTGCTTGACTAGCTGAGAGGAGGTGCATGGCCGCCGTCAGCTCGTACCGTGAGG 1017
Query 1021 CGTCCTGTTAAGTCAGGCAACGAGCGAGACCCACGCCCTTAGTTACCAGCGGATCCTCCG 1080
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1018 CGTCCTGTTAAGTCAGGCAACGAGCGAGACCCACGCTCTTAGTTACCAGCGGATCCTTTT 1077
Query 1081 --GGATGCCGGGCACACTAAGGGGACCGCCAGTGATAAACTGGAGGAAGGAGTGGACGAC 1138
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1078 TTGGATGCCGGGCACACTAAGGGGACCGCCTATGATAAATAGGAGGAAGGAGTGGACGAC 1137
Query 1139 GGTAGGTCCGTATGCCCCGAATCCCCTGGGCTACACGCGGGCTACAATGGCTATGACAAT 1198
|||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||
Sbjct 1138 GGTAGGTCCGTATGCCCCGAATCCTCTGGGCAACACGCGGGCTACAATGGCTGAGACAAT 1197
Query 1199 GGGTTCCGACACTGAAAGGTGAAGGTAATCTCCTAAACATAGTCTTAGTTCGGATCGAGG 1258
|||||||||| | |||||| | |||||||| |||||| ||||| |||||||||| ||||
Sbjct 1198 GGGTTCCGACGCCGAAAGGCGGAGGTAATCCTCTAAACTTAGTCGTAGTTCGGATTGAGG 1257
Query 1259 GCTGTAACCTGCCCTCGTGAAGCTGGAATGCGTAGTAATCGCGTGTCATAATCGCGCGGT 1318
||||||| | ||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1258 ACTGTAACTCGTTCTCATGAAGCTGGAATGCGTAGTAATCGCGTGTCACAATCGCGCGGT 1317
Query 1319 GAATACGTCCCTGCTCCTTGCACACACCGCCCGTCACGCCACCCAAAAAGGGTTTGGATG 1378
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1318 GAATACGTCCCTGCTCCTTGCACACACCGCCCGTCACGCCACCCAAAAAGGGATTGGATG 1377
Query 1379 AGGCCTCAGTCTTTGGTTGGGGTCGAATCTGGGTTCTTTGAGGAGGGCGAAGTCGTAACA 1438
||| | | ||| ||| |||||||| | || ||| ||||||||||||||||||||
Sbjct 1378 AGGATGTAATGTTTTGTTATATTCGAATCTAGTTTTTTTAAGGAGGGCGAAGTCGTAACA 1437
Query 1439 AGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCT 1476
||||||||||||||||||||||||||||||||||||||
Sbjct 1438 AGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCT 1475

Taxonomy

Reports
Lineage

Organism Blast Name Score Number of Hits Description

Methanobrevibacter smithii ATCC 35061 euryarchaeotes -1.0 1 Methanobrevibacter smithii ATCC 35061 hits

Organism

https://blast.ncbi.nlm.nih.gov/Blast.cgi 2/3
05/07/2020 NCBI Blast:AF028688:Methanobacterium bryantii strain...

Description Score E Accession

value
Methanobrevibacter smithii ATCC 35061 [euryarchaeotes ]

Methanobrevibacter smithii ATCC 35061 strain PS 16S ribosomal RNA, complete

-1.0 0.0 NR_074235
sequence

Taxonomy

Taxonomy Number of hits Number of Organisms Description

Methanobrevibacter smithii ATCC 35061 1 1 Methanobrevibacter smithii ATCC 35061 hits

Dot Plot

Plot of AF028688.1 vs NR_074235.1

Top

https://blast.ncbi.nlm.nih.gov/Blast.cgi 3/3