You are on page 1of 8

Animal Conservation.

Print ISSN 1367-9430

SUPPLEMENT ARTICLE

Widespread occurrence of the amphibian chytrid fungus


in Kenya
J. Kielgast1, D. Rödder2, M. Veith2 & S. Lötters2
1 Department of Biology, University of Copenhagen, Copenhagen, Denmark
2 Department of Biogeography, Trier University, Trier, Germany

Abstract
Keywords
Amphibians at the global scale are dramatically declining and the pathogenic
amphibian decline; Batrachochytrium
fungus Batrachochytrium dendrobatidis (Bd) has been suggested to be an important
dendrobatidis; chytridiomycosis; ‘out of
Africa’; endemic; enzootic; Kenya; Africa.
driver in this biodiversity crisis. Increasing evidence points towards the global
emergence of Bd being a panzootic caused by pathogen pollution. Africa has been
Correspondence
suggested to be the origin of the pathogen but remains one of the least-studied
J. Kielgast, Department of Biology, Section
areas. We have conducted the most comprehensive survey on the continent to date
for Evolution and Microbiology, University focusing on Kenya for investigating taxonomic and environmental components in
of Copenhagen, Universitetsparken 15, the distribution of Bd in tropical Africa. Eleven sites along a 770 km transect from
2100 Copenhagen, Denmark. the coast up to the border of Uganda were surveyed. Using quantitative PCR, we
Email: jkielgast@snm.ku.dk screened 861 samples from 23 different species in nine genera. The pathogen was
confirmed at all studied sites, with an overall prevalence of 31.5%. No dead or
Received 15 February 2009; accepted 15 symptomatic specimens were found and no declines have been reported in the
June 2009 region so far. Both prevalence and parasite load ranged from the detection limit to
some of the highest ever reported. The parasite load showed a significant
doi:10.1111/j.1469-1795.2009.00297.x taxonomic bias and a strong inverse correlation with temperature. Our findings
suggest that Bd may be enzootic in the region. We recommend that further
research should focus on comparative experimental studies of susceptibility to Bd
in African species. Moreover, we stress the need for improved knowledge on the
conservation status of the tropical African amphibian fauna to confirm the
enzootic nature of widespread Bd infections.

spread (James et al., 2009). This is supported by empirical


Introduction evidence of a wave-like emergence of disease in the Neo-
Amphibians are the most drastically declining vertebrates tropics (Lips et al., 2008).
on our planet, with nearly one-third of the c. 6400 known The large-scale dissemination of Bd has been suggested to
species being threatened with extinction under the IUCN be human mediated and data on the international trade of
Red List (Stuart et al., 2008). This biodiversity crisis is amphibian species underline the potential for pathogen
developing globally at a rate only paralleled by mass extinc- pollution (e.g. Daszak et al., 2006; Fisher & Garner, 2007;
tion events in geological time (Mendelson III et al., 2006; Walker et al., 2008). The point of origin is therefore a central
Wake & Vredenburg, 2008). Epizootics of the disease question towards an understanding of the epidemiology of
chytridiomycosis, caused by the parasitic fungus Batracho- this disease. It has been advocated, based on evidence from
chytrium dendrobatidis (Bd), have been proposed to play an clawed frogs (genus Xenopus), that an ‘out of Africa’
important role as the proximate cause of the rapid decline of scenario is plausible (Weldon et al., 2004). This was founded
more than 200 amphibian species (Skerratt et al., 2007). This on the oldest known record of Bd, a temporally constant Bd
is supported by well-documented aetiology in focal studies prevalence in museum collections and disease resistance.
of population decline in North America (e.g. Rachowicz Moreover, a dissemination pathway exists via worldwide
et al., 2006), Central America (e.g. Lips et al., 2006), Europe trade in these frogs beginning as early as the 1930s – first
(e.g. Bosch, Martı́nez-Solano & Garcı́a-Parı́s, 2001) and used for a pregnancy assay and subsequently as a model
Australia (e.g. Schloegel et al., 2006). Bd shows a remark- animal in biological and medical teaching and research
ably low host specificity and has now been detected in more (Weldon et al., 2004; Weldon, De Villiers & Du Preez, 2007).
than 400 different anuran and salamander species on all The ‘out of Africa’ hypothesis has been frequently re-
continents on which amphibians occur (Fisher, 2008). How- ferred to in the literature. However, research on Bd has so
ever, molecular studies strongly indicate that Bd’s current far suffered from a geographic bias, whereby Africa has
geographic distribution is the result of a recent panzootic largely been left unstudied. Owing to the lack of apparent

Animal Conservation 13, Suppl.1 (2010) 1–8


c 2009 The Authors. Journal compilation
c 2009 The Zoological Society of London 1
Amphibian chytrid fungus in Kenya J. Kielgast et al.

barriers to Bd within the continent, we hypothesize that an underlying prevalence of 10% (following Cannon & Roe,
‘out of Africa’ scenario would render widespread occurrence 1982). Only post-metamorphic and adult anurans were
of Bd in suitable habitats. Furthermore, if the host–patho- sampled (as caecilians were not found and salamanders are
gen system has co-evolved in the African herpetofauna, absent). Recommended disinfection and containment pro-
some intrinsic factors characterizing its interactions are cedures were followed to avoid transmission and dissemina-
likely to differ from the epizootic range, that is parameters tion of the pathogen (see Speare et al., 2004). Specimens
such as virulence and host specificity. Here we examine the were caught by hand or, in a few cases, by dip-nets and
host–pathogen system in tropical Africa using landscape- placed individually into plastic bags. Transmission of Bd
diverse Kenya as a representative. For the first time, we between individuals was eliminated by collecting the speci-
investigate multiple localities and host taxa with quantita- mens wearing a latex glove or a plastic bag on the hand.
tive methods and present the most comprehensive survey of Diagnostic sampling was carried out using a diagnostic fine-
Bd conducted in Africa so far. tip dry swab (Medical Wire & Equipment, MW-100) by
comprehensively swabbing each specimen’s dorsum, ven-
trum, both lateral sides, the dorsal and ventral surface of
Materials and methods hind limbs, toes and toe webbing. A fresh pair of latex gloves
From 16 September to 22 October 2006, fieldwork was was used for every specimen to avoid contamination of
carried out at 11 localities along a 770 km transect from the samples. Voucher specimens to validate the taxonomic
Kenyan coast up to the border of Uganda covering semi- identification (following Channing & Howell, 2006) of all
humid and humid habitats at an altitudinal range of sampled species (Appendix S2) were deposited at National
159–3100 m a.s.l. (Fig. 1, Appendix S1). The time of sam- Museums of Kenya (NMK), Nairobi and Zoologisches
pling targeted the beginning of the ‘short rains’ of the Forschungsmuseum Alexander Koenig (ZFMK), Bonn.
bimodal precipitation pattern. No information on the sea- Swabs were stored as cool as possible in the field and
sonality of Bd infection dynamics in Africa is available but thereafter at 20 1C until processing.
sampling took place corresponding well with the recommen- For Bd analysis, 861 samples from 23 different species in
dations given for sampling in Australia, for example, focus- nine genera (Appendix S2) were analysed by quantitative
ing on the cold season (Kriger & Hero, 2006; Skerratt et al., PCR, following the protocol of Boyle et al. (2004), but
2008). Approximately 1500 specimens were examined in situ running each sample in two replicates. Samples were identi-
during the survey. A minimum of 30 individual diagnostic fied as positive for Bd if a clear log-linear amplification was
samples for Bd per species and locality was targeted to observed for both replicates and genomic equivalents (GE)
enable 95% probability of detecting a positive assuming an quantified according to standards yielded above 0.5. If

Figure 1 Study sites in Kenya sampled for Batrachochytrium dendrobatidis: 1, Saiwa Swamp National Park; 2, Mt. Elgon National Park; 3,
Kakamega Forest National Reserve; 4, Thompson Falls; 5, Aberdares National Park (moorlands); 6, Aberdares National Park (Salient); 7, Tigoni
Dam; 8, Nairobi (Karens); 9, Taita Hills (Mwundanyi); 10, Taita Hills (Mwatate); 11, Shimba Hills National Parc (see Appendix S1).

2 Animal Conservation 13, Suppl.1 (2010) 1–8


c 2009 The Authors. Journal compilation
c 2009 The Zoological Society of London
J. Kielgast et al. Amphibian chytrid fungus in Kenya

between-replicate standard deviation on the GE was higher w2 = 67.57, Po0.001). Hence, we can conclude that our
than either of the quantified replicates, or only one replicate results strongly indicate a taxonomical component to the
amplified above the detection threshold, the sample was re- abundance and intensity of infection at the time of sampling.
run. If this also yielded equivocal results, the sample was There was no significant difference in the median parasite
identified as negative. The mean GE of positive samples was load across all genera containing more than a single infected
regarded as an index for parasite load. individual (exact two-sided, P= 0.077). Regression analysis
Fisher’s exact test was used for comparing Bd prevalence on climate variables indicates a negative correlation between
in the sampled genera. The parasite loads were compared by temperature and prevalence during the sampling period.
a rank-based generalized linear model (using SAS 9.1 This pattern strongly co-varies with altitudinal distribution
Statistical package). Detected GE loads within a locality and shows an increase in the frequency of Bd infection with
were percentile ranked by partitioning them into 100 groups altitude. At the same time, the general precipitation pattern
in which the smallest received a value of 0 and the largest was not found to correlate with prevalence (Fig. 2).
value received a value of 99. Thus, the influence of sample
size and locality-specific parasite abundance was removed,
enabling comparison of interspecific parasite load across
Discussion
localities in a generalized linear model. The GE loads Using landscape-diverse Kenya as a representative, we have
present in the investigated genera were further compared examined the Bd host–pathogen system in tropical Africa.
by the distribution-free mood’s median test using Quantita- Bd was detected at all investigated sites, indicating that it is
tive Parasitology 3.1 (http://www.zoologia.hu/qp/qp.html). ubiquitous in the sampled habitat types and may be wide-
In order to assess the relationships between climate spread in tropical Africa. We furthermore found that the
conditions during the surveys and Bd prevalence among prevalence and intensity of Bd infection correlated with the
sites, we extracted information on current climate (mini- taxonomic and climatic patterns in the sampled region.
mum and maximum temperature and precipitation) and Our results suggest that there is a taxonomic component
topography from the Worldclim database, version 1.4 to Bd susceptibility in the anuran communities studied.
(http://www.worldclim.org). This is a climate model based Susceptibility appeared to be highest in the genus Amietia
on the weather conditions recorded between 1950 and 2000 (Ranidae), which consistently showed a high prevalence and
with a grid cell resolution of 30 arc sec (Hijmans et al., 2005) parasite load. The genera Ptychadena (Ptychadenidae) and
and was created by interpolation using a thin-plate smooth- Hyperolius (Hyperoliidae) exhibited intermediate infection
ing spline of observed climate at weather stations with levels and members of the genus Xenopus (Pipidae) were
latitude, longitude and elevation as independent variables seldom infected. Interestingly, the median parasite load of
(Hutchinson, 1995; 2004). The relationships between local- infected individuals was not taxonomically biased, indicat-
ity-level prevalence and environmental factors were assessed ing that the extreme ends of the intensity distribution
with simple linear regressions calculated with Xlstat 2009 constitute the difference.
(http://www.addinsoft.com). During our survey, despite extensive collection efforts, no
dead or moribund anurans were encountered, nor were any
clinical symptoms of chytridiomycosis observed. Even the
Results most heavily infected individuals carrying a parasite load of
All 11 sampled localities were Bd positive, with a prevalence over one million GE appeared to be in a good body
from 4 to 71% and an overall mean of 31.5% (Table 1, condition. The high prevalence of Bd and the large number
Appendix S2). Parasite load ranged from the detection of sub-clinically infected individuals may suggest that the
threshold up to more than one million GE. The highest pathogen is enzootic in and possibly native to the studied
parasite load coincided with the highest genus-specific pre- region. However, considering the cryptic disease progres-
valence at a stream habitat in the moorlands of Aberdares sion characteristic for chytridiomycosis, it is not possible to
National Park (Fig. 1), where only a single species, Amietia exclude that it may be causing mortality in the studied
wittei (Ranidae), was sampled. The distribution of Bd populations undetected. Sub-clinical infections can build
parasite load was heavily aggregated in a small subset of up to a threshold, with symptoms only occurring in the
samples with extremely high GE loads as illustrated by the terminal phase of disease (see e.g. Carey et al., 2006; Voyles
variance/mean ratio (Table 1). However, a high parasite et al., 2007), and field observations equivalent to ours have
load was generally unusual throughout the survey, as even been made just before mass die-offs (Woodhams et al.,
indicated by the median mirroring central tendency for GE 2007). Furthermore, an enzootic state of Bd may be a
load in the infected fraction of samples (Table 1). Again, the consequence of populations being in a post-decline phase
sampled A. wittei from Aberdares National Park displayed and that declines were merely not observed as they hap-
unusually high values with a median in the parasitized pened. There are now numerous examples of enzootic Bd
fraction of 3966 GE. Evaluating potential taxonomic bias infection in amphibian populations globally (Retallick,
in the distribution of Bd, we found a significant difference in McCallum & Speare, 2004; McDonald et al., 2005; Long-
the proportion of infected individuals across all sampled core et al., 2007; Brem & Lips, 2008; Woodhams et al., 2008;
genera (exact two-sided, Po0.001). The parasite load simi- Padgett-Flohr & Hopkins, 2009), and recent compelling
larly showed a significant effect of genus (n = 861, d.f. = 8, evidence suggests that Bd can have a marked impact even

Animal Conservation 13, Suppl.1 (2010) 1–8


c 2009 The Authors. Journal compilation
c 2009 The Zoological Society of London 3
Amphibian chytrid fungus in Kenya J. Kielgast et al.

Table 1 Summary statistics for the distribution of Batrachochytrium dendrobatidis (Bd) across localities (see Fig. 1, Appendix S1) and genera
surveyed
Specimens Variance/mean
sampled Bd positive Prevalence (CI)a Max GE Mean GE Median GE ratio
Locality
Aberdares National Park (moorlands) 31.00 22.00 0.71 (0.53–0.84) 1 003 737.00 95 146.00 3966.00 739 406.00
Aberdares National Park (Salient) 111.00 43.00 0.39 (0.30–0.48) 120 350.00 7144.00 48.00 73 771.00
Kakamega Forest National Park 72.00 12.00 0.17 (0.10–0.27) 52 232.00 6059.00 96.00 40 414.00
Mt. Elgon National Park 11.00 5.00 0.46 (0.20–0.74) 14 610.00 2938.00 6.00 14 512.00
Nairobi (Karens) 109.00 27.00 0.25 (0.17–0.34) 48 945.00 2543.00 12.00 39 526.00
Saiwa Swamp National Park 126.00 62.00 0.49 (0.40–0.58) 227 779.00 5145.00 24.00 176 607.00
Shimba Hills National Park 150.00 6.00 0.04 (0.02–0.09) 9.00 6.00 6.00 7.00
Taita Hills (Mwatate) 21.00 4.00 0.19 (0.07–0.40) 980.00 296.00 101.00 828.00
Taita Hills (Mwundanyi) 116.00 34.00 0.29 (0.21–0.38) 10 395.00 587.00 7.00 6185.00
Thompson Falls 71.00 47.00 0.66 (0.54–0.76) 20 336.00 1124.00 65.00 9780.00
Tigoni Dam 50.00 9.00 0.18 (0.09–0.31) 565.00 83.00 12.00 443.00
Genus
Afrixalus (Hyperoliidae) 18.00 2.00 0.11 (0.02–0.33) 4.00 4.00 4.00 3.00
Amietia (Ranidae) 81.00 49.00 0.61 (0.49–0.71) 1 003 737.00 49 327.00 133.00 680 415.00
Amietophrynus (Bufonidae) 13.00 3.00 0.23 (0.07–0.52) 5.00 5.00 5.00 4.00
Hyperolius (Hyperoliidae) 418.00 180.00 0.43 (0.38–0.48) 120 350.00 2579.00 30.00 56 624.00
Kassina (Hyperoliidae) 30.00 1.00 0.03 (0.00–0.18) 2.00 2.00 2.00 2.00
Leptopelis (Arthroleptidae) 20.00 0.00 0.00 (0.00–0.17) 0.00 0.00 0.00 0.00
Phrynobatrachus (Phrynobatrachidae) 27.00 1.00 0.04 (0.00–0.18) 200.00 200.00 200.00 200.00
Ptychadena (Ptychadenidae) 126.00 31.00 0.25 (0.18–0.33) 48 945.00 2216.00 15.00 37 812.00
Xenopus (Pipidae) 128.00 4.00 0.03 (0.01–0.08) 18.00 7.00 4.00 14.00
a
95% confidence intervals on Bd prevalence in parentheses were constructed using Sterne’s exact method (Reiczigel, 2003).
CI, confidence intervals; GE, genomic equivalents.

1 1
(a) (b)
0.8 0.8

0.6 0.6
Prevalence

Prevalence

0.4 0.4

0.2 0.2

0 0
0 5 10 15 20 15 20 25
−0.2 −0.2
Minimum temperature (°C) Minimum temperature (°C)

1 Figure 2 Simple linear regressions illustrating


1
(c) (d) the relationships between the mean Bd preva-
0.8 0.8 lence at the studied sites and (a) minimum
temperature (r2 = 0.825, Po0.001), (b) maxi-
0.6 0.6
mum temperature (r2 = 0.666, P= 0.002), (c)
Prevalence

Prevalence

0.4 0.4 precipitation (r2 = 0.002, P= 0.904) and (d) alti-


tude (r2 = 0.709, Po0.001); 95% confidence
0.2 0.2 intervals are indicated as vertical bars. The grey
lines represent the 95% confidence limits for
0 0
0 50 100 150 200 0 1000 2000 3000
the mean of the prediction of a given value
−0.2 −0.2 (dotted line) and the 95% confidence limits on a
Precipitation (mm) Altitude (m) single prediction for a given value (solid line).

decades after becoming enzootic (Murray et al., 2009). Existing accounts of Bd in African amphibians are
Hence, the apparently enzootic state of Bd found in the equivocal regarding pathogenicity and so far little data are
present study should be regarded as a conservation concern available. In tropical Africa, Bd has been reported to be
and requires further investigation. present in Nigeria (Imasuen et al., 2009), The Democratic

4 Animal Conservation 13, Suppl.1 (2010) 1–8


c 2009 The Authors. Journal compilation
c 2009 The Zoological Society of London
J. Kielgast et al. Amphibian chytrid fungus in Kenya

Republic of Congo (Greenbaum et al., 2008), Uganda cipitation patterns did not correlate with Bd prevalence (Fig.
(Goldberg, Readel & Lee, 2007) and Tanzania (Weldon 2). The species sampled were a priori the most abundant;
et al., 2004), while a single study reports not detecting Bd in hence, it is understandable that species compositions varied
Cameroon (Doherty-Bone et al., 2008). In Tanzania, Bd was among sampling sites. The correlation detected between
suggested to be linked to the decline and disappearance of temperature and prevalence may therefore either reflect
the Kihansi spray toad Nectophrynoides asperginis, sup- varying degrees of climatic suitability of the study sites for
ported by finding two out of four dead individuals collected Bd (e.g. coincident with the results shown by Piotrowski
during the decline to be Bd positive (Lee et al., 2006). The et al., 2004; Kriger et al., 2007; Rödder et al., 2008) or
species was categorized under ‘rapid enigmatic declines’ in differences in the susceptibility of the sampled amphibian
the IUCN Global Amphibian Assessment 2004 (Stuart communities or both.
et al., 2004), which have been suggested to cover over Bd- The question remains open as to whether the Bd panzoo-
driven extinction processes (Skerratt et al., 2007). However, tic has its origin in Africa. If this is the case, the observed
the Kihansi spray toad was endemic to a single waterfall patterns of high prevalence and apparently low virulence
system (c. 2 ha.) that was radically changed by the construc- found in the present study can be explained in a co-evolu-
tion of a power plant before declines (Krajick, 2006). The tionary context, that is evolution of host resistance, aviru-
aetiology of this decline is therefore highly confounded by lence or attenuation of the local strain of Bd (McCallum,
habitat change and the role of Bd is unclear. All other 2005). There is accumulating evidence that Bd exists in
studies from tropical Africa have not been coupled with various strains exhibiting markedly different levels of viru-
observations of mortality or decline. Goldberg et al. (2007) lence (Berger et al., 2005; Retallick & Miera, 2007; Fisher
conducted a single site survey with methodology similar to et al., 2009) although recent evidence points towards no
ours and report congruent findings with 22% prevalence in correspondence between the genetic lineage of strain and
109 specimens and no mortality events noted in the region. virulence (James et al., 2009). Comparative clinical studies
The remaining reports are accounts of small-scale sampling investigating host–pathogen dynamics by experimental ex-
and single Bd-positive individuals. posure of African and non-African amphibian hosts and Bd
In the South African region, Bd has been found to be isolates may be a way forward in testing the ‘out-of-Africa’
widespread but no associated population declines have been hypothesis. Here, the conditional nature of pathogenicity
observed (Hopkins & Channing, 2003; Weldon, 2002; Wel- should be evaluated, by including a range of climatic
don et al., 2004; Smith et al., 2007). However, Bd-associated conditions, to determine the relative importance of the
mortality in frogs has been detected twice without presum- intrinsic taxonomic components of susceptibility and cli-
ing an aetiological link. The findings of the diagnostic matic factors. Moreover, the ‘out-of-Africa’ hypothesis
characteristics of chytridiomycosis (Lane, Weldon & Bing- needs to be addressed by analysing the phylogenetic patterns
ham, 2003), and patterns of mortality and infection resem- and global genetic diversity in Bd including a broader
bling a die-off (Hopkins & Channing, 2003), call for further coverage of Bd isolates from Africa than are currently
investigations, but do not contradict an endemic presence of available (James et al., 2009).
Bd in the region. It should be underlined that disease surveys as such have
Information on the susceptibility of African amphibians a limited capability of detecting declines and proving patho-
to Bd under controlled conditions is limited to pipids and logical causality. This requires clinical experimental studies
indicates susceptibility in the western African species Silur- of host–pathogen dynamics (including fulfilment of Koch’s
ana tropicalis but resistance in Xenopus laevis (Reed et al., postulates) and long-term disease surveillance coupled with
2000; Parker et al., 2002; Fisher & Garner, 2007). This has studies of host population dynamics. There is an urgent need
not yet been verified by experimental infection challenges to improve our knowledge of the conservation status of
but is solely based on observations of mortality and aclinical tropical Africa’s amphibian fauna. A crucial step towards
infection in captive populations. this is a qualified assessment of the risk imposed by wide-
It has repeatedly been shown that the pathogenicity of spread Bd infections found in the present study. As a
chytridiomycosis is context dependent and particularly priority, we urge the initiation of population monitoring
affected by environmental parameters, for example tem- focusing on susceptible amphibian communities in the high-
perature and precipitation (Bosch et al., 2001; Daszak, lands of tropical Africa.
Cunningham & Hyatt, 2003; Berger et al., 2004; Kriger &
Hero, 2006; Kriger, Peregolou & Hero, 2007; Kriger, 2009;
Longo, Burrowes & Joglar, in press). Furthermore, the
environmental suitability for a species at a given site may
Acknowledgements
affect the capacity of the host’s immune system affecting the We are grateful to Trent Garner and Andrew Cunningham
prevalence and intensity of Bd infections (Raffel et al., 2006; for making available the facilities and expertise of the
Fisher, 2007). Our results indicate that prevalence decreases Institute of Zoology, London. This extraordinary helpful-
with higher monthly minimum and maximum temperatures ness was completely essential in realizing the present study.
(Fig. 2), thus supporting previous findings (i.e. Berger et al., We thank The National Museums of Kenya and staff for
2004; Piotrowski, Annis & Longcore, 2004; Kriger & Hero, fruitful cooperation. Susanne Schick, Felix Müller, George
2006; Rödder, Veith & Lötters, 2008). In our study, pre- Kennedy and Beryl Bwong were of invaluable assistance

Animal Conservation 13, Suppl.1 (2010) 1–8


c 2009 The Authors. Journal compilation
c 2009 The Zoological Society of London 5
Amphibian chytrid fungus in Kenya J. Kielgast et al.

during fieldwork. The first author would like to express Daszak, P., Cunningham, A.A. & Hyatt, A.D. (2003). Infec-
deepest gratitude to Mads Frost Bertelsen and Copenhagen tious disease and amphibian population declines. Divers.
Zoo for decisively contributing to the study and Mogens Distrib. 9, 141–150.
Andersen and Peter Gravlund for practical support. Finally, Daszak, P., Schloegel, L.M., Maranda, L., Cronin, A.,
we would like to extend many thanks to two anonymous Pokras, M., Smith, K. & Picco, A. (2006). The global trade
reviewers whose helpful comments greatly improved the in amphibians: summary interim report of a ccm study.
paper. The project was financed through the Copenhagen
Available at http://www.conservationmedicine.org
Zoo/Center for Zoo and Wild Animal Health, The Danish
(accessed 11 January 2009).
WWF and Aase og Ejnar Danielsens Fond, BIOLOG-
Doherty-Bone, T.M., Bielby, J., Gonwouo, N.L., LeBreton,
BIOTA from the Federal Ministry of Education and Re-
M. & Cunningham, A.A. (2008). In a vulnerable position?
search (BMB+F, Germany), H.R. Frederiksen og Grete
Siim Frederiksen Fond, Fonden Kjebi. D.R. is grateful to Preliminary survey work fails to detect the amphibian
the ‘Graduiertenförderung des Landes Nordrhein-Westfa- chytrid pathogen in the highlands of Cameroon, an am-
len’ for financial support. The Kenya Wildlife Service, phibian hotspot. Herp. J. 18, 115–118.
KWS, kindly granted permission for this work (No. KWS/ Fisher, M.C. (2007). Potential interactions between amphi-
RP/5001). bian immunity, infectious disease and climate change.
Conflicts of interest: None. Anim. Conserv. 10, 420–421.
Fisher, M.C. (2008). Molecular toolkit unlocks life cycle of
the panzootic amphibian pathogen Batrachochytrium den-
drobatidis. Proc. Natl. Acad. Sci. USA 105, 17209–17210.
References Fisher, M.C., Bosch, J., Yin, Z., Stead, D.A., Walker, J.,
Selway, L., Brown, A.J.P., Walker, L.A., Gow, N.A.R.,
Berger, L., Marantelli, G., Skerratt, L.L. & Speare, R. (2005). Stajich, J.E. & Garner, T.W.J. (2009). Proteomic and
Virulence of the amphibian chytrid fungus Batrachochy- phenotypic profiling of the amphibian pathogen Batracho-
trium dendrobatidis varies with the strain. Dis. Aquat. Org. chytrium dendrobatidis shows that genotype is linked to
68, 47–50. virulence. Mol. Ecol. 18, 415–429.
Berger, L., Speare, R., Hines, H., Marantelli, G., Hyatt, A.D., Fisher, M.C. & Garner, T.W.J. (2007). The relationship
McDonald, K.R., Skerratt, L.F., Olsen, V., Clarke, J.M., between the emergence of Batrachochytrium dendrobatidis,
Gillespie, G., Mahony, M., Sheppard, N., Williams, C. & the international trade in amphibians and introduced
Tyler, M. (2004). Effect of season and temperature on amphibian species. Fungal Biol. Rev. 21, 2–9.
mortality in amphibians due to chytridiomycosis. Aust. Goldberg, T.L., Readel, A.M. & Lee, M.H. (2007). Chytrid
Vet. J. 82, 31–36. fungus in frogs from an Equatorial African montane forest
Bosch, J., Martı́nez-Solano, I. & Garcı́a-Parı́s, M. (2001). in western Uganda. J. Wildl. Dis. 43, 521–524.
Evidence of a chytrid fungus infection involved in the Greenbaum, E., Chifundera, K., Mwenebatu, M.A. & Reed,
decline of the common midwife toad (Alytes obstetricans) K. (2008). Amphibian chytrid fungus infections in Hyper-
in protected areas of central Spain. Biol. Conserv. 95, olius (Anura: Hyeproliidae) from Eastern Democratic Re-
331–337. public of Congo. Herp. Rev. 39, 70–73.
Boyle, D.G., Boyle, D.B., Olsen, V., Morgan, J.A.T. & Hyatt, Hijmans, R.J., Cameron, S.E., Parra, J.L., Jones, P.G. & Jarvis,
A.D. (2004). Rapid quantitative detection of chytridiomy- A. (2005). Very high resolution interpolated climate surfaces
cosis (Batrachochytrium dendrobatidis) in amphibian sam- for global land areas. Int. J. Climatol. 25, 1965–1978.
ples using real-time taqman PCR assay. Dis. Aquat. Org. Hopkins, S. & Channing, A. (2003). Chytrid fungus in
60, 141–148. Northern and Western Cape frog populations, South
Brem, F.M.R. & Lips, K.R. (2008). Batrachochytrium den- Africa. Herp. Rev. 34, 334–336.
drobatidis infection patterns among Panamanian amphi- Hutchinson, M.F. (1995). Interpolating mean rainfall using
bian species, habitats and elevations during epizootic and thin plate smoothing splines. IJGIS 9, 385–403.
enzootic stages. Dis. Aquat. Org. 81, 189–202. Hutchinson, M.F. (2004). Anusplin version 4.3. Centre for
Cannon, R.M. & Roe, R.T. (1982). Livestock disease surveys: resource and environment studies. Canberra: The Australian
a field manual for veterinarians. Canberra: Australian National University.
Government Publishing Service. Imasuen, A.A., Weldon, C., Aisien, M.S.O. & Dupreez, L.H.
Carey, C., Bruzgul, J.E., Livo, L.J., Walling, M.L., Kuehl, (2009). Amphibian chytridiomycosis: first report in Nigeria
K.A., Dixon, B.F., Pessier, A.P., Alford, R.A. & Rogers, from the skin slough of Chiromantis rufescens. Froglog 90,
K.B. (2006). Experimental exposures of boreal toads (Bufo 6–8.
boreas) to a pathogenic chytrid fungus (Batrachochytrium James, T.Y., Litvintseva, A.P., Vilgalys, R.J., Morgan, A.,
dendrobatidis). EcoHealth 3, 5–21. Taylor, T.J.W., Fisher, M.C., Berger, L., Weldon, C.,
Channing, A. & Howell, K.M. (2006). Amphibians of East DuPreez, L. & Longcore, J.E. 2009. Rapid global expan-
Africa. Ithaca: Cornell University Press. sion of the fungal disease chytridiomycosis into declining

6 Animal Conservation 13, Suppl.1 (2010) 1–8


c 2009 The Authors. Journal compilation
c 2009 The Zoological Society of London
J. Kielgast et al. Amphibian chytrid fungus in Kenya

and healthy amphibian populations. PLoS Pathog 5, Wake, D.B. & Brodie, E.D.J. (2006). Confronting amphi-
e1000458. bian declines and extinctions. Science 313, 48.
Krajick, K. (2006). Conservation biology – the lost world of Murray, K.A., Skerratt, L.F., Speare, R. & McCallum, H.
the Kihansi toad. Science 311, 1230–1232. 2009. Impact and dynamics of disease in species threatened
Kriger, K.M. (2009). Lack of evidence for the drought-linked by the amphibian chytrid fungus, Batrachochytrium den-
chytridiomycosis hypothesis. J Wildl. Dis. 45, 537–541. drobatidis. Conserv. Biol. (Online DOI: 10.1111/j.1523-
Kriger, K.M. & Hero, J.M. (2006). Large-scale seasonal 1739.2009.01211.x).
variation in the prevalence and severity of chytridiomyco- Padgett-Flohr, G.E. & Hopkins, R.L. (2009). Batrachochy-
sis. J. Zool. (Lond.) 271, 352–359. trium dendrobatidis, a novel pathogen approaching ende-
Kriger, K.M., Peregolou, F. & Hero, J.-M. (2007). Latitudi- mism in central California. Dis. Aquat. Org. 83, 1–9.
nal variation in the prevalence and intensity of chytrid Parker, J.M., Mikaelian, I., Hahn, N. & Diggs, H.E. (2002).
(Batrachochytrium dendrobatidis) infection in eastern Aus- Clinical diagnosis and treatment of epidermal chytridio-
tralia. Conserv. Biol. 21, 1280–1290. mycosis in African clawed frogs (Xenopus tropicalis).
Lane, E.P., Weldon, C. & Bingham, J. (2003). Histological Comp. Med. 52, 265–268.
evidence of chytridiomycosis in a free-ranging amphibian Piotrowski, J.S., Annis, S.L. & Longcore, J.E. (2004). Phy-
(Afrana fuscigula (Anura: Ranidae)) in South Africa. J. S. siology of Batrachochytrium dendrobatidis, a chytrid
A. Vet. Assoc. 74, 20–21. pathogen of amphibians. Mycologia 96, 9–15.
Lee, S., Zippel, K., Ramos, L. & Searle, J. (2006). Captive- Rachowicz, L.J., Knapp, R.A., Morgan, J.A.T., Stice, M.J.,
breeding programme for the Kihansi spray toad, Necto- Vredenburg, V.T., Parker, J.M. & Briggs, C.J. (2006).
phrynoides asperginis, at the Wildlife Conservation Society, Emerging infectious disease as a proximate cause of am-
Bronx, New York. Int. Zoo Yb. 4, 24–25. phibian mass mortality. Ecology 87, 1671–1683.
Lips, K.R., Brem, F., Brenes, R., Reeve, J.D., Alford, R.A., Raffel, T.R., Rohr, J.R., Kiesecker, J.M. & Hudson, P.J.
Voyles, J., Carey, C., Livo, L., Pessier, A.P. & Collins, J.P. (2006). Negative effects of changing temperature on am-
(2006). Emerging infectious disease and the loss of biodi- phibian immunity under field conditions. Funct. Ecol. 20,
versity in a neotropical amphibian community. Proc. Natl. 819–828.
Acad. Sci. USA 102, 3165–3170. Reed, K.D., Ruth, G.R., Meyer, J.A. & Shukla, S.K. (2000).
Lips, K.R., Diffendorfer, J., Mendelson, J.R. III & Sears, Chlamydia pneumoniae infection in a breeding colony of
M.W. (2008). Riding the wave: reconciling the roles of African Clawed frogs (Xenopus tropicalis). Emerg. Infect.
disease and climate change in amphibian declines. PLoS Dis. 6, 196–199.
Biol. 6, 441–454. Reiczigel, J. (2003). Confidence intervals for the binomial
Longcore, J.R., Longcore, J.E., Pessier, A.P. & Halteman, parameter: some new considerations. Stat. Med. 22,
W.A. (2007). Chytridiomycosis widespread in anurans of 611–621.
northeastern United States. J. Wildl. Mgmt. 71, 435–444. Retallick, R.W.R., McCallum, H. & Speare, R. (2004).
Longo, A.V., Burrowes, P.A. & Joglar, R.L. (in press) Endemic infection of the amphibian chytrid fungus in a
Seasonality of Batrachochytrium dendrobatidis infection in frog community post-decline. Plos Biol. 2, 20351.
direct-developing frogs suggests a mechanism for persis- Retallick, R.W.R. & Miera, V. (2007). Strain differences in
tence. Dis. Aquat. Org. (Online DOI: 10.3354/dao02054). the amphibian chytrid Batrachochytrium dendrobatidis and
McCallum, H. (2005). Inconclusiveness of chytridiomycosis non-permanent, sub-lethal effects of infection. Dis. Aquat.
as the agent in widespread frog declines. Conserv. Biol. 19, Org. 75, 201–207.
1421–1430. Rödder, D., Veith, M. & Lötters, S. (2008). Environmental
McDonald, K.R., Méndez, D., Müller, R., Freeman, A.B. & gradients explaining the prevalence and intensity of infec-
Speare R, . (2005). Decline in the prevalence of chytridio- tion with the amphibian chytrid fungus: the host’s per-
mycosis in upland frog populations in North Queensland, spective. Anim. Conserv. 11, 513–517.
Australia. Pac. Conserv. Biol. 11, 114–120. Schloegel, L.M., Hero, J.-M., Berger, L., Speare, R., McDo-
Mendelson, J.R. III, Lips, K.R., Gagliardo, R.W., Rabb, nald, K. & Daszak, P. (2006). The decline of the sharp-
G.B., Collins, J.P., Differdorfer, J.E., Daszack, P., Ibánez, snouted day frog (Taudactylus acutirostris): the first docu-
R., Zippel, K.C., Lawson, D.P., Wright, K.M., Stuart, mented case of extinction by infection in a free-ranging
S.N., Gascon, C., Silva, H.R., Burrowes, P.A., Joglar, wildlife species? EcoHealth 3, 35–40.
R.L., La Marca, E., Lötters, S., Preez, L.H., Weldon, C., Skerratt, L.F., Berger, L., Hines, H.B., McDonald, K.R.,
Hyatt, A., Rodriguez-Mahecha, J.V., Hunt, S., Robertson, Mendez, D. & Speare, R. (2008). Surveyprotocol for
H., Lock, B., Raxworthy, C.J., Frost, D.R., Lacy, R.C., detecting chytridiomycosis in all Australian frog popula-
Alford, R.A., Campbell, J.A., Parra-Olea, G., Bolanos, F., tions. Dis. Aquat. Org. 80, 85–94.
Domingo, J.J.C., Halliday, T., Murphy, J.B., Wake, M.H., Skerratt, L.F., Berger, L., Speare, R., Cashins, S., McDonald,
Coloma, L.A., Kuzmin, S.L., Price, M.S., Howell, K.M., K.R., Phillott, A.D., Hines, H.B. & Kenyon, N. (2007).
Lau, M., Pethiyagoda, R., Boone, M., Lannoo, M.J., Spread of chytridiomycosis has caused the rapid global
Blaustein, A.R., Dobson, A., Griffiths, A., Crump, M.L., decline and extinction of frogs. EcoHealth 4, 125–134.

Animal Conservation 13, Suppl.1 (2010) 1–8


c 2009 The Authors. Journal compilation
c 2009 The Zoological Society of London 7
Amphibian chytrid fungus in Kenya J. Kielgast et al.

Smith, K.G., Weldon, C., Conradie, W. & du Preez, L.H. Africa, with implications for biodiversity conservation.
(2007). Relationships among size, development, and Ba- Afr. J. Herpetol. 56, 77–83.
trachochytrium dendrobatidis infection in African tadpoles. Weldon, C., du Preez, L.H., Hyatt, A.D., Muller, R. &
Dis. Aquat. Org. 74, 159–164. Speare, R. (2004). Origin of the amphibian chytrid fungus.
Speare, R., Berger, L., Skerratt, L., Alford, R., Mendez, D., Emerg. Infect. Dis. 10, 2100–2105.
Cashins, S., Kenyon, N., Hauselberger, K. & Rowley, J. Woodhams, D.C., Vredenburg, V.T., Simon, M.A., Billhei-
(2004). Hygiene protocol for handling amphibians in field mer, D., Shakhtour, B., Shyr, Y., Briggs, C.J., Rollins-
studies. Available at http://www.jcu.edu.au/school/phtm/ Smith, L.A. & Harris, R.N. (2007). Symbotic bacteria
PHTM/frogs/field-hygiene.pdf (accessed 2 January 2009). contribute to innate immune defences of the threatened
Stuart, S.N., Chanson, J.S., Cox, N.A., Young, B.E., Rodri- mountain yellow-legged frog, Rana muscosa. Biol. Conserv.
gues, A.S.L., Fischman, D.L. & Waller, R.W. (2004). 138, 390–398.
Status and trends of amphibian declines and extinctions
worldwide. Science 306, 1783–1786.
Stuart, S.N., Hoffmann, M., Chanson, J.S., Cox, N.A.,
Berridge, R.J., Ramani, P. & Young, B.E. (2008). Threa-
tened amphibians of the world. Barcelona, Spain: Lynx Supporting Information
Edicions, in association with IUCN, Conservation Inter-
Additional Supporting Information may be found in the
national and NatureServe.
online version of this article:
Voyles, J., Berger, L., Young, S., Speare, R., Webb, R.,
Warner, J., Rudd, D., Campbell, R. & Skerratt, L.F.
Appendix S1. Localities sampled including altitude in m
(2007). Electrolyte depletion and osmotic imbalance in
a.s.l. (see Fig. 1).
amphibians with chytridiomycosis. Dis. Aquat. Org. 77,
Appendix S2. Bd distribution within the sampled am-
113–118. phibian communities (species identification after Channing
Wake, D.B. & Vredenburg, V.T. (2008). Are we in the midst & Howell, 2006). Exact Clopper-Pearson 95% Confidence
of the sixth mass extinction? A view from the world of intervals are presented for the prevalence. Parasite load
amphibians. Proc. Natl. Acad. Sci. USA 105, 11466–11473. summary statistics are based on the infected fraction of the
Walker, S.F., Bosch, J., James, T.Y., Litvintseva, A.P., Valls, sample.
J.A.O., Pina, S., Garcia, G., Rosa, G.A., Cunningham,
A.A., Hole, S., Griffiths, R. & Fisher, M.C. (2008). As a service to our authors and readers, this journal
Invasive pathogens threaten species recovery programs. provides supporting information supplied by the authors.
Curr. Biol. 18, R853–R854. Such materials are peer-reviewed and may be re-organized
Weldon, C. (2002). Chytridiomycosis survey in south africa. for online delivery, but are not copy-edited or typeset.
Froglog 51, 1–2. Technical support issues arising from supporting informa-
Weldon, C., De Villiers, A.L. & Du Preez, L.H. (2007). tion (other than missing files) should be addressed to the
Quantification of the trade in Xenopus laevis from South authors.

8 Animal Conservation 13, Suppl.1 (2010) 1–8


c 2009 The Authors. Journal compilation
c 2009 The Zoological Society of London

You might also like