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JFM0010.1177/1098612X16661375Journal of Feline Medicine and SurgeryMukhopadhyay et al
Original Article
Abstract
Objectives The present study was undertaken to characterise the viral polypeptide 2 (VP2) gene of parvovirus from
domestic cats in India.
Methods The faecal samples from diarrhoeic/healthy domestic cats were collected from different geographical
regions of India for screening by PCR assay followed by sequence analysis of the VP2 gene.
Results Canine parvovirus (CPV)/feline panleukopenia virus (FPV) infections were found in 12 samples (11.3%) of
106 faecal samples tested. Two new CPV-2a (297Ala and Asn426) and three FPV strains were identified by VP2
gene analysis. Several unique and existing amino acid mutations were found suggesting continuous evolution and
emergence of newer variants. The phylogenetic analysis of the CPV sequences revealed that the two new CPV-
2a strains from Mumbai (MC8) and Puducherry (P15) were clustered together in a single clade but had evolved
independently and were ancestrally related to Chinese CPV-2a isolates. The FPV sequences (T-C-6 and T-C-1) from
Thrissur, Kerala, formed a different clade (FPV clade) and were closely related to each other and had an ancestral
relationship with an FPV isolate from the USA. Another FPV isolate from Goa (GC1) was positioned in the same
clade but had evolved independently.
Conclusions and relevance Detection of CPV in both diarrhoeic/healthy cats and the occurrence of FPV infection in
a vaccinated cat provide new insights into parvovirus infections in cats in India.
Introduction
Feline panleukopenia virus (FPV) and canine parvovirus antigenic strains differ from CPV-2a at only one position
(CPV) infections are highly contagious and serious (VP2 residue 426), they are now considered to be vari-
enteric diseases of cats and dogs, respectively, with high ants of CPV-2a rather than distinct subtypes, as are all of
fatality rates. They are members of the genus the CPVs circulating worldwide today.3 During the early
Protoparvovirus of the family Parvoviridae, which also 1990s in German CPV isolates, an additional amino acid
includes mink enteritis virus. Canine parvovirus caused difference was observed in CPV-2a and CPV-2b at amino
by CPV-2 is considered a canine-specific variant of the
FPV that emerged as a novel pathogen in the late 1970s
1Department of Veterinary Microbiology, Rajiv Gandhi Institute of
as a consequence of an interspecies jump from other car-
Veterinary Education and Research, Puducherry, India
nivores to dogs and spread rapidly worldwide.1 2Department of Veterinary Biochemistry, Rajiv Gandhi Institute of
However, by the end of 1980, CPV-2 was completely Veterinary Education and Research, Puducherry, India
replaced globally in dogs by a genetic and antigenic vari-
ant termed CPV-2a.2 Subsequently, the VP2 residue 426 Corresponding author:
Hirak Kumar Mukhopadhyay MVSc, PhD, Department of
changed from Asn to Asp and then from Asp to Glu in Veterinary Microbiology, Rajiv Gandhi Institute of Veterinary
the so-called CPV-2b and CPV-2c antigenic variant Education and Research, Puducherry 605 009, India
strains, respectively. However, as the CPV-2b and CPV-2c Email: mhirak@rediffmail.com
Table 1 Details showing the number of samples collected from different states of India (2011–2014) and the results
1 Maharashtra Mumbai 15 5
2 West Bengal Kolkata 2 1
3 Madhya Pradesh Jabalpur 3 1
4 Kerala Thrissur 13 2
5 Union Territory of Puducherry Puducherry 25 1
Karaikal 2 –
Auroville 10 –
6 Goa Caranzalem 3 2
7 Tamil Nadu Chennai 10 –
Coimbatore 9 –
8 Andhra Pradesh Tirupati 2 –
Visakhapatnam 2 –
9 Karnataka Bengaluru 10 –
Total 106 12 (11.3%)
acid position 297 (Ser to Ala) and the mutants were des- Materials and methods
ignated ‘new CPV-2a/2b’.4 CPV and FPV are two closely Clinical samples and laboratory processing
related viruses, causing disease in their respective hosts, A total of 106 faecal samples/rectal swabs were collected
but new variants of CPVs have acquired the feline host between 2011 and 2014 from both CPV/FPV suspected
range, allowing them to infect both cats and dogs, and also apparently healthy cats of different age groups
whereas the original CPV-2 does not replicate in cats.5 from different states of India, as detailed in Table 1. The
FPV, the prototype parvovirus of carnivores is a highly faecal samples/rectal swabs collected were emulsified in
contagious sickness occurring in cats, characterised by 1 ml 0.1 M phosphate-buffered saline of pH 7.4, stored at
severe leukopenia, gastroenteritis, reproductive disorders 4ºC and transported to the laboratory, maintaining cold
and nervous signs. Cats are also susceptible to the new chain during transport. The emulsions were centrifuged
variants of canine parvovirus (CPV-2a, CPV-2b and at 9300 g for 15 mins at 4ºC and the supernatant was
CPV-2c). As a consequence of the host range shift of CPV-2 passed through a 0.45 μm membrane filter (Millipore).
from dogs to cats and wild felids, there are several reports The filtrate was collected and stored at −40ºC until fur-
of detection of CPV-2a/2b5,6 and CPV-2c infection in cats,7–9 ther use.
but FPV remains the more prevalent species of parvovirus
causing disease in cats.10 In contrast, in some Asian coun- PCR
tries, large numbers of CPV isolates were detected in The template DNA for the PCR assay was prepared fol-
domestic and wild cats.7 A recent study frequently isolated lowing the procedure described earlier.12 Total nucleic
CPVs from apparently healthy cats, suggesting the role of acid from all the clinical specimens was extracted by the
CPVs in causing subclinical or very mild disease in this boiling lysis method by boiling at 96ºC for 10 mins fol-
species.11 Multiple infections could increase the chance of lowed by chilling immediately in crushed ice. Following
establishing persistent infection in feline hosts emphasis- high-speed centrifugation, the supernatants were diluted
ing the epidemiological role of cats as reservoirs. Feline at 1:10 in nuclease-free water (NFW) to reduce residual
hosts could also act as the source of new variants of parvo- inhibitors of DNA polymerase activity.13 The extracted
viruses, emerging in the field, as they are susceptible to template DNA was stored at −40ºC until further use and
both new variants of CPVs and FPV. was screened for the presence of CPV/FPV using the
Realising the importance of cats as a potential source Hfor/Hrev primer pair listed in Table 2, which amplifies a
of genetic diversity for parvoviruses, and as there is 630 base pair (bp) fragment of the VP2 gene encoding
absolutely no such study in India on detection and char- capsid protein.14 The DNA prepared from CPV-2 vaccine
acterisation of parvoviruses in domestic cats, the parvo- strain (Strain C154; Intervet India)/CPV-2b vaccine
virus (CPV/FPV) strains detected in diarrhoeic/healthy strain (Fort Dodge Animal Health) maintained in the
domestic cats from different states of India were ana- Department of Veterinary Microbiology, Rajiv Gandhi
lysed in the present study. The molecular characterisa- Institute of Veterinary Education and Research,
tion and sequence diversity and phylogeny were also Puducherry, India was used as positive control in the
evaluated on the viral polypeptide 2 (VP2) capsid gene. PCR assay.
Table 2 Oligonucleotide primer sequences used for screening the samples and viral polypeptide 2 gene analysis
The PCR amplification of the VP2 capsid protein gene earlier. The PCR-amplified products were excised from
was carried out using 100 ng template DNA, 5 µl 10× the gel and extracted using a Qiagen Gel Extraction Kit.
PCR buffer, 2 mM MgCl2, 1 µl 10 mM deoxynucleotide The four overlapping PCR products of the VP2 gene (for
triphosphates, 10 µM forward and reverse primers, 2 U each sample/isolate) were sequenced for both strands of
Taq DNA Polymerase (New England Bio Labs) and the DNA (5’–3’ and 3’–5’) and aligned to determine their
volume was made up to 50 µl with NFW. PCR amplifica- nucleotide/amino acid variations in the VP2 gene. The
tion consisted of initial denaturation at 95ºC for 5 mins sequencing was carried out using automated DNA
followed by 35 cycles of denaturation at 95ºC for 30 s, sequencer (Applied Biosystems) at Eurofins Genomics
annealing at 55ºC for 30 s and extension at 70ºC for 1 (Bengaluru, India). The sequence chromatogram was
min, followed by a final extension at 70ºC for 10 mins. visualised in BioEdit version 7.0.5 analysis software (Isis
The PCR-amplified products were resolved on 1.5% aga- Therapeutics). A nucleotide basic local alignment search
rose gel in Tris acetate EDTA buffer and visualised under tool (BLAST) analysis was performed with the obtained
an ultraviolet transilluminator (Syngene). sequences using the NCBI nucleotide database (http://
blast.ncbi.nlm.nih.gov/Blast.cgi) to confirm the genus
Virus isolation specificity to CPV/FPV. VP2 gene sequences of FPV,
Virus isolation was carried out as per the procedure rec- CPV-2, CPV-2a, CPV-2b and CPV-2c from different parts
ommended.17 Eight PCR-positive samples from cats rep- of the world were retrieved from the NCBI nucleotide
resenting the diverse geographical locations of India database and multiple sequence alignment was per-
were randomly selected and subjected to isolation of formed using the Clustal W algorithm in MEGA5.18 The
virus in an A-72 cell line maintained in RPMI-1640 media VP2 genes of five complete/partial aligned sequences
(Sigma-Aldrich). The clinical samples were filtered and under this study were submitted to Genbank for allot-
used for virus isolation in the A-72 cell line. The infected ment of accession numbers.
monolayers were harvested on day 3 postinoculation
(with or without a cytopathic effect [CPE]) by three cycles Phylogenetic analysis
of alternative freezing, thawing and clarified at 6000 g for The parvovirus sequences obtained in this study and the
15 mins in a refrigerated centrifuge. The supernatants 17 parvovirus reference sequences retrieved from
were stored at −40ºC until further use. The presence of GenBank were aligned and evolutionary history was
virus in the cell culture fluids at the third passage level inferred by employing the maximum likelihood method
was confirmed by PCR assay using the Hfor/Hrev primer based on the Tamura 3-parameter model implemented
pair. in MEGA5.18,19 The branch lengths were measured in
terms of the number of substitutions per site. Bootstrap
Genotyping of parvovirus samples/isolates test (1000 replicates) was undertaken to evaluate the
Three randomly selected PCR-positive (Hfor/Hrev) clini- confidence level of branching in the phylogenetic tree.
cal samples and two cell culture isolates representing
different geographical areas of India were subjected Results
to another four individual PCR assays using four sets PCR
of overlapping sequencing primer pairs listed in Of the total 106 faecal samples collected from CPV/FPV
Table 2,14,15,16 following the same protocol as detailed suspected diarrhoeic/healthy cats of different states and
Sample Place Breed Sex Age (months) Vaccination Clinical signs, if any
P15 Puducherry Non-descript Female 6 No Diarrhoeic, died later
T-C-1 Thrisoor Non-descript Female 8 No Diarrhoeic, died later
T-C-6 Thrisoor Non-descript Male 7 No Diarrhoeic, died later
MC8 Mumbai Non-descript Female 3 No Healthy
MC9 Mumbai Non-descript Female 7 No Healthy
MC11 Mumbai Non-descript Male 10 No Healthy
MC12 Mumbai Persian Male 8 No Diarrhoeic
MC13 Mumbai Non-descript Female 8 No Diarrhoeic
CC1 Kolkata Non-descript Male 14 No Diarrhoeic
JC1 Jabalpur Non-descript Male 7 No Healthy
GC1 Goa Non-descript Female 24 Yes Bloody diarrhoea, died later
GC2 Goa Non-descript Male 18 Yes Bloody diarrhoea, died later
New CPV-2a
New CPV-2a
Table 4 Non-synonymous mutations at various amino acid residues of the VP2 protein of feline panleukopenia virus (FPV)/canine parvovirus (CPV) obtained from
CPV/FPV
strain
FPV
FPV
FPV
(Asn→
A→C
(565)
4479
His)
C
–
–
–
–
(Asn→
A→C
(564)
4476
His)
C
–
–
–
–
(Met→
A→G
(551)
4437
Val)
G
–
–
–
–
(Ala→
G→A
(514)
4326
Thr)
–
–
–
–
(Thr→
A→G
(440)
4104
Ala)
G
G
–
–
–
A→G
(Thr→ (Ile→
(401)
3987
Val)
–
–
–
–
C→A
(388)
3949
Asn)
A
–
–
–
–
(Ala→
G→C
(359)
3861
Pro)
–
–
–
–
study are shown with solid triangles, vaccine with solid circle
(324)
–
–
–
T→A
Tyr)
–
–
–
Glu)
*
*
*
C
–
*
*
*
Gly)
(81)
*
*
*
(Gly→Gln)
*
*
*
KP090139
KP090138
KT444622
KF772942
JX459572
CPV genome nucleotide
number
FPV vaccines.
The mutation at amino acid change Tyr324Ile was
and their mutation
*Not sequenced
T-C-1
T-C-6
MC8
GC1
P15
cats
selection in all carnivorous CPV isolates.28 This residue acid between FPV (Asn/AAT) and CPV (Ser/AGT)
was adjacent to residue 323, responsible for canine trans- strains. Interestingly, two consecutive unique mutations
ferrin receptor binding, and together with residue 93, in one of the FPV strains (T-C-6) at amino acid positions
determined the canine host range. Therefore, mutation 564 (His/CAT) and 565 (His/CAT) have been reported
at amino acid residue 324 is likely to have an impact on in this study. This FPV strain (T-C-6) needs to be studied
the parvovirus host range.29 Interestingly, the frequency further in relation to its pathogenicity and antigenicity.
of CPV strains carrying mutations at the 324Ile residue Therefore, the presence of unique and certain existing
had increased enormously and had reached a high prev- non-synonymous mutations in the CPV/FPV strains in
alence among Chinese and Indian CPVs isolated from India indicate that the CPV/FPV strains are under con-
dogs.22–23,25,26 However, to date, this mutation has never stant selection pressure and are constantly mutating,
been reported from any CPV strains isolated from cats. leading to the evolution of newer CPV/FPV types/vari-
In fact, the presence of the mutation at amino acid posi- ants among the Indian cat population.
tion 324 (TyrIle) in CPVs also isolated from cats in this Therefore, as per the present study, mutations and the
study provides new insights into the theory of involve- positive selection of the mutants was found to be the
ment of amino acid position 324 as a canine host range major mechanism of emergence and evolution of CPV/
mutation. FPVs in India. No cat is vaccinated against CPV in India
The next variation was observed in the amino acid and very few cats are vaccinated with FPV vaccine. In
residue Thr440Ala in both the sequences (MC8 and P15). our study, except for the cats from Goa which were vac-
Amino acid residue 440 is important because it is located cinated with a commercial trivalent FPV vaccine, no cat
at the top of the three-fold spike (GH loop) of the VP2 was vaccinated against CPV/FPV vaccines.
protein on the surface of the capsid, the main antigenic
site of the virus.30,31 A similar codon change at nucleotide Conclusions
position 4104 (AG) was also reported in earlier studies The present study provides new and valuable insight
in CPVs isolated from dogs,15,24,25,32,33 and also in CPVs into the evolutionary dynamics of parvovirus infections
isolated from cats.8 Therefore, this mutation is likely to in cats in India, although further studies involving
change the antigenicity of this CPV strain isolated from greater sample size and wider geographical regions are
the cat. required for complete understanding of the problem.
Interestingly, three unique amino acid changes – The presence of CPVs in both healthy and diarrhoeic cats
Gly10Gln, Gly224Glu and Ala514Thr – were noticed in emphasises the possible role of cats as a source of infec-
the MC8 sequence. These mutations have not been tion to dogs. As cats in India were found to be suscepti-
reported by earlier research and are unique to the CPV ble to both CPV and FPV infections, the role of cats as the
strain obtained from cats in the present study. Although source of new variants of parvovirus needs to be further
the functional impact of these mutations was yet to be explored. Furthermore, the presence of FPV infection
ascertained, the present study indicated active evolution into the domestic cat population raises serious concern
of this CPV-2a strain of cat origin. on the urgent need of educating the owners about the
The FPV sequence (GC1) showed four amino acid importance of FPV vaccination. The cats from Goa suc-
changes – Arg81Gly, Ser179Thr, Ala359Pro and Ile401Val. cumbing to FPV infection in spite of vaccination raises
Two of these non-synonymous mutations were detected serious concerns. Intensifying surveillance of parvovirus
in the GH loop of the VP2 protein (267–498 residues infections in cats in India is required.
located between βG and βH strands), exposed on the
surface of capsid, and greatest variability was seen in Supplementary material Table to show synonymous
this antigenic region. Six synonymous mutations were mutations at various amino acid residues of the VP2 protein
also noticed in this FPV sequence. This FPV sequence of FPV/CPV obtained from cat.
was obtained from a cat from Goa that was vaccinated
with a commercial trivalent FPV vaccine. The presence Acknowledgements We thank Dean Rajiv Gandhi, Insti-
of many non-synonymous and synonymous mutations tute of Veterinary Education and Research, Puducherry, India,
in this FPV strain would have contributed to antigenic for providing the necessary funds and facilities to carry out this
study.
variation, resulting in vaccine failure. Three amino acid
mutations – Met551Val, Asn564His and Asn565His –
Conflicts of interest The authors declared no potential con-
were observed in another FPV sequence (T-C-6), while
flicts of interest with respect to the research, authorship, and/
the other FPV sequence T-C-1 showed only one mutation or publication of this article.
Thr388Asn. These mutations are all unique to our strains
and have not been reported so far from any FPV isolates. Funding This project was funded by a grant received from
The amino acid at position 564 is a differentiating amino DBT, Government of India (BT/PR14677/ADV/57/111/2010).