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Dnaextraction of Buccal Swab
Dnaextraction of Buccal Swab
Dr Kathryn Scott
Research Administrator, Zitzmann Group, Department of
Biochemistry
Lecturer in Biochemistry, Christ Church
Extracting Human DNA in the Classroom
• Buccal (cheek cells) can be harvested painlessly and
in sufficient quantity to visualise DNA extracted in a
simple 4-step protocol
• Take the water from your tube into your mouth and move it
around for 30 seconds
• Don’t swallow the water
• Add 2 ml of lysis buffer to the test tube you will be using for
DNA extraction
Stratified squamous
non-keratinized
epithelium
Connective tissue
50 mm
Buccal Cells Provide An Excellent Source of DNA
50 mm
Cell Lysis Buffer
• 50 mM Tris pH 8.0
• Buffering for DNA stability and optimal enzyme activity
• 1 mM Ethylenediaminetetraacetic acid
Cell Lysis – The Structure of SDS Micelles
hydrophilic
hydrophobic
Computer
Sodium simulation of a
Dodecyl Micelle
Sodium Dodecyl
Sulfate Cross-section
Sulfate
(SDS) Micelle
The Structure of Cell Membranes
hydrophilic
hydrophobic
Ethylenediaminetetraacetic Acid
EDTA Inhibits Enzymes such as DNase I
DNA
Ca2+
Mg2+
DNase I
from
bovine
pancreas
Protein digestion also removes the histone ‘cotton reels’ around which the DNA is wrapped
Proteinase K Digestion
• Originally extracted from the fungus Tritirachium album
• Named due to its ability to cleave Keratin
• Many proteinases only cleave after a specific amino
acid
• This leads to the production of large fragments
• Proteinase K is relatively non-specific, therefore leaving very
small fragments
https://commons.wikimedia.org/wiki/File:DNA_chemical_structure.svg
DNA Precipitation
• When DNA molecules and NaCl are dissolved in
water the DNA, Na+ and Cl- ions will all be
surrounded by water molecules
• Water screens the charges on the DNA and salt ions and
prevents them interacting to form strong ionic bonds
• ProteinaseK – 10 mg - £23.00
Variations on the Protocol
• Cell harvesting – scraping vs chewing
• Ethanol vs Isopropanol
Variations - Cell Harvesting
• Harvesting sufficient buccal cells is essential for
successful DNA extraction
Poor DNA
yield
Subtilisin A
Proteinase K No EDTA No Protease No Protease
NO SHAKING 37oC Sample 1 Sample 2
NO SHAKING NO SHAKING NO SHAKING
Variations – Isopropanol vs Ethanol
• DNA is less soluble in isopropanol than ethanol
• therefore a lower volume of isopropanol is required for
DNA precipitation
Isopropanol Ethanol
NO SHAKING NO SHAKING
Pitfalls – Harvesting Sufficient Cells is Vital
DNA from a
second round
DNA from a
of cell
thorough cell
harvesting
harvest.
immediately
after the first.